Anne Kupczok
Bollback Group
10 Publications
2014 | Journal Article | IST-REx-ID: 2042 | 
Motif depletion in bacteriophages infecting hosts with CRISPR systems
A. Kupczok, J.P. Bollback, BMC Genomics 15 (2014).
[Published Version]
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| Files available
| DOI
A. Kupczok, J.P. Bollback, BMC Genomics 15 (2014).
2013 | Journal Article | IST-REx-ID: 2412 |
Probabilistic models for CRISPR spacer content evolution
A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
[Published Version]
View
| Files available
| DOI
A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
2013 | Journal Article | IST-REx-ID: 2410 |
Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis
R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements 1 (2013).
[Published Version]
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| Files available
| DOI
R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements 1 (2013).
2012 | Journal Article | IST-REx-ID: 2411 |
A consistent phylogenetic backbone for the fungi
I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.
[Published Version]
View
| Files available
| DOI
I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.
2011 | Journal Article | IST-REx-ID: 3370 |
Consequences of different null models on the tree shape bias of supertree methods
A. Kupczok, Systematic Biology 60 (2011) 218–225.
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
A. Kupczok, Systematic Biology 60 (2011) 218–225.
2011 | Journal Article | IST-REx-ID: 3387 |
Split based computation of majority rule supertrees
A. Kupczok, BMC Evolutionary Biology 11 (2011).
[Published Version]
View
| Files available
| DOI
A. Kupczok, BMC Evolutionary Biology 11 (2011).
2010 | Journal Article | IST-REx-ID: 2409 |
Accuracy of phylogeny reconstruction methods combining overlapping gene data sets
A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology 5 (2010).
[Published Version]
View
| Files available
| DOI
A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology 5 (2010).
2009 | Journal Article | IST-REx-ID: 3768
Comment on '{A} congruence index for testing topological similarity between trees'.
A. Kupczok, A. Von Haeseler, Bioinformatics 25 (2009) 147–149.
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| DOI
A. Kupczok, A. Von Haeseler, Bioinformatics 25 (2009) 147–149.
2008 | Journal Article | IST-REx-ID: 3769
An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees.
A. Kupczok, A. Von Haeseler, S. Klaere, Journal of Computational Biology 15 (2008) 577–591.
View
| DOI
A. Kupczok, A. Von Haeseler, S. Klaere, Journal of Computational Biology 15 (2008) 577–591.
2006 | Journal Article | IST-REx-ID: 3767
Determinants of simulated RNA evolution.
A. Kupczok, P. Dittrich, Journal of Theoretical Biology 238 (2006) 726–35.
View
| DOI
A. Kupczok, P. Dittrich, Journal of Theoretical Biology 238 (2006) 726–35.
10 Publications
2014 | Journal Article | IST-REx-ID: 2042 |
Motif depletion in bacteriophages infecting hosts with CRISPR systems
A. Kupczok, J.P. Bollback, BMC Genomics 15 (2014).
[Published Version]
View
| Files available
| DOI
A. Kupczok, J.P. Bollback, BMC Genomics 15 (2014).
2013 | Journal Article | IST-REx-ID: 2412 |
Probabilistic models for CRISPR spacer content evolution
A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
[Published Version]
View
| Files available
| DOI
A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
2013 | Journal Article | IST-REx-ID: 2410 |
Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis
R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements 1 (2013).
[Published Version]
View
| Files available
| DOI
R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements 1 (2013).
2012 | Journal Article | IST-REx-ID: 2411 |
A consistent phylogenetic backbone for the fungi
I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.
[Published Version]
View
| Files available
| DOI
I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.
2011 | Journal Article | IST-REx-ID: 3370 |
Consequences of different null models on the tree shape bias of supertree methods
A. Kupczok, Systematic Biology 60 (2011) 218–225.
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
A. Kupczok, Systematic Biology 60 (2011) 218–225.
2011 | Journal Article | IST-REx-ID: 3387 |
Split based computation of majority rule supertrees
A. Kupczok, BMC Evolutionary Biology 11 (2011).
[Published Version]
View
| Files available
| DOI
A. Kupczok, BMC Evolutionary Biology 11 (2011).
2010 | Journal Article | IST-REx-ID: 2409 |
Accuracy of phylogeny reconstruction methods combining overlapping gene data sets
A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology 5 (2010).
[Published Version]
View
| Files available
| DOI
A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology 5 (2010).
2009 | Journal Article | IST-REx-ID: 3768
Comment on '{A} congruence index for testing topological similarity between trees'.
A. Kupczok, A. Von Haeseler, Bioinformatics 25 (2009) 147–149.
View
| DOI
A. Kupczok, A. Von Haeseler, Bioinformatics 25 (2009) 147–149.
2008 | Journal Article | IST-REx-ID: 3769
An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees.
A. Kupczok, A. Von Haeseler, S. Klaere, Journal of Computational Biology 15 (2008) 577–591.
View
| DOI
A. Kupczok, A. Von Haeseler, S. Klaere, Journal of Computational Biology 15 (2008) 577–591.
2006 | Journal Article | IST-REx-ID: 3767
Determinants of simulated RNA evolution.
A. Kupczok, P. Dittrich, Journal of Theoretical Biology 238 (2006) 726–35.
View
| DOI
A. Kupczok, P. Dittrich, Journal of Theoretical Biology 238 (2006) 726–35.