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29 Publications

2019 | Thesis | IST-REx-ID: 6392
Lukacisin, M. (2019). Quantitative investigation of gene expression principles through combinatorial drug perturbation and theory. IST Austria. https://doi.org/10.15479/AT:ISTA:6392
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2018 | Thesis | IST-REx-ID: 6263
Lukacisinova, M. (2018). Genetic determinants of antibiotic resistance evolution. IST Austria. https://doi.org/10.15479/AT:ISTA:th1072
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2017 | Journal Article | IST-REx-ID: 1027   OA
Lukacisinova, M., & Bollenbach, M. T. (2017). Toward a quantitative understanding of antibiotic resistance evolution. Current Opinion in Biotechnology, 46, 90–97. https://doi.org/10.1016/j.copbio.2017.02.013
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2017 | Research Data | IST-REx-ID: 5563   OA
Lukacisin, M. (2017). MATLAB analysis code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.” IST Austria. https://doi.org/10.15479/AT:ISTA:64
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2017 | Journal Article | IST-REx-ID: 822   OA
De Vos, M., Zagórski, M. P., Mcnally, A., & Bollenbach, M. T. (2017). Interaction networks, ecological stability, and collective antibiotic tolerance in polymicrobial infections. PNAS, 114(40), 10666–10671. https://doi.org/10.1073/pnas.1713372114
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2017 | Journal Article | IST-REx-ID: 1029   OA
Lukacisin, M., Landon, M., & Jajoo, R. (2017). Sequence-specific thermodynamic properties of nucleic acids influence both transcriptional pausing and backtracking in yeast. PLoS One, 12(3), e0174066. https://doi.org/10.1371/journal.pone.0174066
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2017 | Journal Article | IST-REx-ID: 520
Du, W., Angermayr, A., Jongbloets, J., Molenaar, D., Bachmann, H., Hellingwerf, K., & Branco Dos Santos, F. (2017). Nonhierarchical flux regulation exposes the fitness burden associated with lactate production in Synechocystis sp. PCC6803. ACS Synthetic Biology, 6(3), 395–401. https://doi.org/10.1021/acssynbio.6b00235
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2017 | Journal Article | IST-REx-ID: 696   OA
Lukacisinova, M., Novak, S., & Paixao, T. (2017). Stress induced mutagenesis: Stress diversity facilitates the persistence of mutator genes. PLoS Computational Biology, 13(7), e1005609. https://doi.org/10.1371/journal.pcbi.1005609
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2017 | Thesis | IST-REx-ID: 818
Mitosch, K. (2017). Timing, variability and cross-protection in bacteria – insights from dynamic gene expression responses to antibiotics. IST Austria. https://doi.org/10.15479/AT:ISTA:th_862
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2017 | Journal Article | IST-REx-ID: 666   OA
Mitosch, K., Rieckh, G., & Bollenbach, T. (2017). Noisy response to antibiotic stress predicts subsequent single cell survival in an acidic environment. Cell Systems, 4(4), 393–403. https://doi.org/10.1016/j.cels.2017.03.001
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2016 | Journal Article | IST-REx-ID: 1154   OA
Schwarz, J., Bierbaum, V., Merrin, J., Frank, T., Hauschild, R., Bollenbach, M. T., … Mehling, M. (2016). A microfluidic device for measuring cell migration towards substrate bound and soluble chemokine gradients. Scientific Reports, 6. https://doi.org/10.1038/srep36440
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2016 | Journal Article | IST-REx-ID: 1218   OA
Angermayr, A., Van Alphen, P., Hasdemir, D., Kramer, G., Iqbal, M., Van Grondelle, W., … Hellingwerf, K. (2016). Culturing synechocystis sp. Strain pcc 6803 with N2 and CO2 in a diel regime reveals multiphase glycogen dynamics with low maintenance costs. Applied and Environmental Microbiology, 82(14), 4180–4189. https://doi.org/10.1128/AEM.00256-16
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2016 | Research Data | IST-REx-ID: 5556
Lukacisin, M., Landon, M., & Jajoo, R. (2016). MATLAB analysis code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.” IST Austria. https://doi.org/10.15479/AT:ISTA:45
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2016 | Journal Article | IST-REx-ID: 1552   OA
Qi, Q., Toll Riera, M., Heilbron, K., Preston, G., & Maclean, R. C. (2016). The genomic basis of adaptation to the fitness cost of rifampicin resistance in Pseudomonas aeruginosa. Proceedings of the Royal Society of London Series B Biological Sciences, 283(1822). https://doi.org/10.1098/rspb.2015.2452
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2015 | Journal Article | IST-REx-ID: 1623   OA
Hammar, P., Angermayr, A., Sjostrom, S., Van Der Meer, J., Hellingwerf, K., Hudson, E., & Joensson, H. (2015). Single-cell screening of photosynthetic growth and lactate production by cyanobacteria. Biotechnology for Biofuels, 8(1). https://doi.org/10.1186/s13068-015-0380-2
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2015 | Journal Article | IST-REx-ID: 1509   OA
Michalko, J., Dravecka, M., Bollenbach, T., & Friml, J. (2015). Embryo-lethal phenotypes in early abp1 mutants are due to disruption of the neighboring BSM gene. F1000 Research , 4. https://doi.org/10.12688/f1000research.7143.1
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2015 | Journal Article | IST-REx-ID: 1586
Angermayr, A., Gorchs, A., & Hellingwerf, K. (2015). Metabolic engineering of cyanobacteria for the synthesis of commodity products. Trends in Biotechnology, 33(6), 352–361. https://doi.org/10.1016/j.tibtech.2015.03.009
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2015 | Journal Article | IST-REx-ID: 1810   OA
Bollenbach, M. T. (2015). Antimicrobial interactions: Mechanisms and implications for drug discovery and resistance evolution. Current Opinion in Microbiology, 27, 1–9. https://doi.org/10.1016/j.mib.2015.05.008
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2015 | Journal Article | IST-REx-ID: 1823   OA
Chevereau, G., & Bollenbach, M. T. (2015). Systematic discovery of drug interaction mechanisms. Molecular Systems Biology, 11(4). https://doi.org/10.15252/msb.20156098
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2015 | Journal Article | IST-REx-ID: 1619
Chevereau, G., Dravecka, M., Batur, T., Guvenek, A., Ayhan, D., Toprak, E., & Bollenbach, M. T. (2015). Quantifying the determinants of evolutionary dynamics leading to drug resistance. PLoS Biology, 13(11), e1002299. https://doi.org/10.1371/journal.pbio.1002299
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2015 | Journal Article | IST-REx-ID: 1571
De Vos, M., Dawid, A., Šunderlíková, V., & Tans, S. (2015). Breaking evolutionary constraint with a tradeoff ratchet. PNAS, 112(48), 14906–14911. https://doi.org/10.1073/pnas.1510282112
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2014 | Journal Article | IST-REx-ID: 2001
Mitosch, K., & Bollenbach, T. (2014). Bacterial responses to antibiotics and their combinations. Environmental Microbiology Reports, 6(6), 545–557. https://doi.org/10.1111/1758-2229.12190
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2014 | Journal Article | IST-REx-ID: 2040   OA
Kicheva, A., Bollenbach, M. T., Ribeiro, A., Pérez Valle, H., Lovell Badge, R., Episkopou, V., & Briscoe, J. (2014). Coordination of progenitor specification and growth in mouse and chick spinal cord. Science, 345(6204). https://doi.org/10.1126/science.1254927
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2014 | Journal Article | IST-REx-ID: 2220   OA
De Vos, M., & Bollenbach, M. T. (2014). Suppressive drug interactions between antifungals. Chemistry and Biology, 21(4), 439–440. https://doi.org/10.1016/j.chembiol.2014.04.004
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2013 | Journal Article | IST-REx-ID: 2810   OA
De Vos, M., Poelwijk, F., Battich, N., Ndika, J., & Tans, S. (2013). Environmental dependence of genetic constraint. PLoS Genetics, 9(6). https://doi.org/10.1371/journal.pgen.1003580
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2012 | Journal Article | IST-REx-ID: 2970
Kicheva, A., Bollenbach, M. T., Wartlick, O., Julicher, F., & Gonzalez Gaitan, M. (2012). Investigating the principles of morphogen gradient formation: from tissues to cells. Current Opinion in Genetics & Development, 22(6), 527–532. https://doi.org/10.1016/j.gde.2012.08.004
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2012 | Journal Article | IST-REx-ID: 3160
Pantazis, P., & Bollenbach, T. (2012). Transcription factor kinetics and the emerging asymmetry in the early mammalian embryo. Cell Cycle, 11(11), 2055–2058. https://doi.org/10.4161/cc.20118
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2011 | Journal Article | IST-REx-ID: 3376   OA
Bollenbach, M. T., & Kishony, R. (2011). Resolution of gene regulatory conflicts caused by combinations of antibiotics. Molecular Cell, 42(4), 413–425. https://doi.org/10.1016/j.molcel.2011.04.016
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2011 | Journal Article | IST-REx-ID: 3429
Plachta, N., Bollenbach, M. T., Pease, S., Fraser, S., & Pantazis, P. (2011). Oct4 kinetics predict cell lineage patterning in the early mammalian embryo. Nature Cell Biology, 13(2), 117–123. https://doi.org/10.1038/ncb2154
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