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30 Publications
2019 | Journal Article | IST-REx-ID: 7026   

Emergent gene expression responses to drug combinations predict higher-order drug interactions
M. Lukacisin, T. Bollenbach, Cell Systems (2019).
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M. Lukacisin, T. Bollenbach, Cell Systems (2019).
2019 | Thesis | IST-REx-ID: 6392
Quantitative investigation of gene expression principles through combinatorial drug perturbation and theory
M. Lukacisin, Quantitative Investigation of Gene Expression Principles through Combinatorial Drug Perturbation and Theory, IST Austria, 2019.
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M. Lukacisin, Quantitative Investigation of Gene Expression Principles through Combinatorial Drug Perturbation and Theory, IST Austria, 2019.
2018 | Thesis | IST-REx-ID: 6263
Genetic determinants of antibiotic resistance evolution
M. Lukacisinova, Genetic Determinants of Antibiotic Resistance Evolution, IST Austria, 2018.
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M. Lukacisinova, Genetic Determinants of Antibiotic Resistance Evolution, IST Austria, 2018.
2017 | Journal Article | IST-REx-ID: 1027
Toward a quantitative understanding of antibiotic resistance evolution
M. Lukacisinova, M.T. Bollenbach, Current Opinion in Biotechnology 46 (2017) 90–97.
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M. Lukacisinova, M.T. Bollenbach, Current Opinion in Biotechnology 46 (2017) 90–97.
2017 | Research Data | IST-REx-ID: 5563   

MATLAB analysis code for 'Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast'
M. Lukacisin, MATLAB Analysis Code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast,” IST Austria, 2017.
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M. Lukacisin, MATLAB Analysis Code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast,” IST Austria, 2017.
2017 | Journal Article | IST-REx-ID: 822   

Interaction networks, ecological stability, and collective antibiotic tolerance in polymicrobial infections
M. De Vos, M.P. Zagórski, A. Mcnally, M.T. Bollenbach, PNAS 114 (2017) 10666–10671.
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M. De Vos, M.P. Zagórski, A. Mcnally, M.T. Bollenbach, PNAS 114 (2017) 10666–10671.
2017 | Journal Article | IST-REx-ID: 520
Nonhierarchical flux regulation exposes the fitness burden associated with lactate production in Synechocystis sp. PCC6803
W. Du, A. Angermayr, J. Jongbloets, D. Molenaar, H. Bachmann, K. Hellingwerf, F. Branco Dos Santos, ACS Synthetic Biology 6 (2017) 395–401.
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W. Du, A. Angermayr, J. Jongbloets, D. Molenaar, H. Bachmann, K. Hellingwerf, F. Branco Dos Santos, ACS Synthetic Biology 6 (2017) 395–401.
2017 | Journal Article | IST-REx-ID: 1029   

Sequence-specific thermodynamic properties of nucleic acids influence both transcriptional pausing and backtracking in yeast
M. Lukacisin, M. Landon, R. Jajoo, PLoS One 12 (2017) e0174066.
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M. Lukacisin, M. Landon, R. Jajoo, PLoS One 12 (2017) e0174066.
2017 | Journal Article | IST-REx-ID: 696   

Stress induced mutagenesis: Stress diversity facilitates the persistence of mutator genes
M. Lukacisinova, S. Novak, T. Paixao, PLoS Computational Biology 13 (2017) e1005609.
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M. Lukacisinova, S. Novak, T. Paixao, PLoS Computational Biology 13 (2017) e1005609.
2017 | Thesis | IST-REx-ID: 818   

Timing, variability and cross-protection in bacteria – insights from dynamic gene expression responses to antibiotics
K. Mitosch, Timing, Variability and Cross-Protection in Bacteria – Insights from Dynamic Gene Expression Responses to Antibiotics, IST Austria, 2017.
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K. Mitosch, Timing, Variability and Cross-Protection in Bacteria – Insights from Dynamic Gene Expression Responses to Antibiotics, IST Austria, 2017.
2017 | Journal Article | IST-REx-ID: 666
Noisy response to antibiotic stress predicts subsequent single cell survival in an acidic environment
K. Mitosch, G. Rieckh, T. Bollenbach, Cell Systems 4 (2017) 393–403.
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K. Mitosch, G. Rieckh, T. Bollenbach, Cell Systems 4 (2017) 393–403.
2016 | Journal Article | IST-REx-ID: 1154   

A microfluidic device for measuring cell migration towards substrate bound and soluble chemokine gradients
J. Schwarz, V. Bierbaum, J. Merrin, T. Frank, R. Hauschild, M.T. Bollenbach, S. Tay, M.K. Sixt, M. Mehling, Scientific Reports 6 (2016).
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J. Schwarz, V. Bierbaum, J. Merrin, T. Frank, R. Hauschild, M.T. Bollenbach, S. Tay, M.K. Sixt, M. Mehling, Scientific Reports 6 (2016).
2016 | Journal Article | IST-REx-ID: 1218   

Culturing synechocystis sp. Strain pcc 6803 with N2 and CO2 in a diel regime reveals multiphase glycogen dynamics with low maintenance costs
A. Angermayr, P. Van Alphen, D. Hasdemir, G. Kramer, M. Iqbal, W. Van Grondelle, H. Hoefsloot, Y. Choi, K. Hellingwerf, Applied and Environmental Microbiology 82 (2016) 4180–4189.
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A. Angermayr, P. Van Alphen, D. Hasdemir, G. Kramer, M. Iqbal, W. Van Grondelle, H. Hoefsloot, Y. Choi, K. Hellingwerf, Applied and Environmental Microbiology 82 (2016) 4180–4189.
2016 | Research Data | IST-REx-ID: 5556
MATLAB analysis code for 'Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast'
M. Lukacisin, M. Landon, R. Jajoo, MATLAB Analysis Code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast,” IST Austria, 2016.
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| Files available
| DOI
M. Lukacisin, M. Landon, R. Jajoo, MATLAB Analysis Code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast,” IST Austria, 2016.
2016 | Journal Article | IST-REx-ID: 1552   

The genomic basis of adaptation to the fitness cost of rifampicin resistance in Pseudomonas aeruginosa
Q. Qi, M. Toll Riera, K. Heilbron, G. Preston, R.C. Maclean, Proceedings of the Royal Society of London Series B Biological Sciences 283 (2016).
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Q. Qi, M. Toll Riera, K. Heilbron, G. Preston, R.C. Maclean, Proceedings of the Royal Society of London Series B Biological Sciences 283 (2016).
2015 | Journal Article | IST-REx-ID: 1623   

Single-cell screening of photosynthetic growth and lactate production by cyanobacteria
P. Hammar, A. Angermayr, S. Sjostrom, J. Van Der Meer, K. Hellingwerf, E. Hudson, H. Joensson, Biotechnology for Biofuels 8 (2015).
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P. Hammar, A. Angermayr, S. Sjostrom, J. Van Der Meer, K. Hellingwerf, E. Hudson, H. Joensson, Biotechnology for Biofuels 8 (2015).
2015 | Journal Article | IST-REx-ID: 1509   

Embryo-lethal phenotypes in early abp1 mutants are due to disruption of the neighboring BSM gene
J. Michalko, M. Dravecka, T. Bollenbach, J. Friml, F1000 Research 4 (2015).
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J. Michalko, M. Dravecka, T. Bollenbach, J. Friml, F1000 Research 4 (2015).
2015 | Journal Article | IST-REx-ID: 1586
Metabolic engineering of cyanobacteria for the synthesis of commodity products
A. Angermayr, A. Gorchs, K. Hellingwerf, Trends in Biotechnology 33 (2015) 352–361.
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A. Angermayr, A. Gorchs, K. Hellingwerf, Trends in Biotechnology 33 (2015) 352–361.
2015 | Journal Article | IST-REx-ID: 1810   

Antimicrobial interactions: Mechanisms and implications for drug discovery and resistance evolution
M.T. Bollenbach, Current Opinion in Microbiology 27 (2015) 1–9.
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M.T. Bollenbach, Current Opinion in Microbiology 27 (2015) 1–9.
2015 | Journal Article | IST-REx-ID: 1823   

Systematic discovery of drug interaction mechanisms
G. Chevereau, M.T. Bollenbach, Molecular Systems Biology 11 (2015).
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G. Chevereau, M.T. Bollenbach, Molecular Systems Biology 11 (2015).
2015 | Journal Article | IST-REx-ID: 1619
Quantifying the determinants of evolutionary dynamics leading to drug resistance
G. Chevereau, M. Dravecka, T. Batur, A. Guvenek, D. Ayhan, E. Toprak, M.T. Bollenbach, PLoS Biology 13 (2015) e1002299.
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G. Chevereau, M. Dravecka, T. Batur, A. Guvenek, D. Ayhan, E. Toprak, M.T. Bollenbach, PLoS Biology 13 (2015) e1002299.
2015 | Journal Article | IST-REx-ID: 1571
Breaking evolutionary constraint with a tradeoff ratchet
M. De Vos, A. Dawid, V. Šunderlíková, S. Tans, PNAS 112 (2015) 14906–14911.
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M. De Vos, A. Dawid, V. Šunderlíková, S. Tans, PNAS 112 (2015) 14906–14911.
2014 | Journal Article | IST-REx-ID: 2001
Bacterial responses to antibiotics and their combinations
K. Mitosch, T. Bollenbach, Environmental Microbiology Reports 6 (2014) 545–557.
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K. Mitosch, T. Bollenbach, Environmental Microbiology Reports 6 (2014) 545–557.
2014 | Journal Article | IST-REx-ID: 2040   

Coordination of progenitor specification and growth in mouse and chick spinal cord
A. Kicheva, M.T. Bollenbach, A. Ribeiro, H. Pérez Valle, R. Lovell Badge, V. Episkopou, J. Briscoe, Science 345 (2014).
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A. Kicheva, M.T. Bollenbach, A. Ribeiro, H. Pérez Valle, R. Lovell Badge, V. Episkopou, J. Briscoe, Science 345 (2014).
2014 | Journal Article | IST-REx-ID: 2220   

Suppressive drug interactions between antifungals
M. De Vos, M.T. Bollenbach, Chemistry and Biology 21 (2014) 439–440.
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M. De Vos, M.T. Bollenbach, Chemistry and Biology 21 (2014) 439–440.
2013 | Journal Article | IST-REx-ID: 2810   

Environmental dependence of genetic constraint
M. De Vos, F. Poelwijk, N. Battich, J. Ndika, S. Tans, PLoS Genetics 9 (2013).
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M. De Vos, F. Poelwijk, N. Battich, J. Ndika, S. Tans, PLoS Genetics 9 (2013).
2012 | Journal Article | IST-REx-ID: 2970
Investigating the principles of morphogen gradient formation: from tissues to cells
A. Kicheva, M.T. Bollenbach, O. Wartlick, F. Julicher, M. Gonzalez Gaitan, Current Opinion in Genetics & Development 22 (2012) 527–532.
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A. Kicheva, M.T. Bollenbach, O. Wartlick, F. Julicher, M. Gonzalez Gaitan, Current Opinion in Genetics & Development 22 (2012) 527–532.
2012 | Journal Article | IST-REx-ID: 3160
Transcription factor kinetics and the emerging asymmetry in the early mammalian embryo
P. Pantazis, T. Bollenbach, Cell Cycle 11 (2012) 2055–2058.
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P. Pantazis, T. Bollenbach, Cell Cycle 11 (2012) 2055–2058.
2011 | Journal Article | IST-REx-ID: 3376   

Resolution of gene regulatory conflicts caused by combinations of antibiotics
M.T. Bollenbach, R. Kishony, Molecular Cell 42 (2011) 413–425.
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M.T. Bollenbach, R. Kishony, Molecular Cell 42 (2011) 413–425.
2011 | Journal Article | IST-REx-ID: 3429
Oct4 kinetics predict cell lineage patterning in the early mammalian embryo
N. Plachta, M.T. Bollenbach, S. Pease, S. Fraser, P. Pantazis, Nature Cell Biology 13 (2011) 117–123.
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N. Plachta, M.T. Bollenbach, S. Pease, S. Fraser, P. Pantazis, Nature Cell Biology 13 (2011) 117–123.