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87 Publications
2023 | Journal Article | IST-REx-ID: 14040 | 
Zhao Z, Vercellino I, Knoppová J, et al. The Ycf48 accessory factor occupies the site of the oxygen-evolving manganese cluster during photosystem II biogenesis. Nature Communications. 2023;14. doi:10.1038/s41467-023-40388-6
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2023 | Journal Article | IST-REx-ID: 14077 |
Puixeu Sala G, Macon A, Vicoso B. Sex-specific estimation of cis and trans regulation of gene expression in heads and gonads of Drosophila melanogaster. G3: Genes, Genomes, Genetics. 2023;13(8). doi:10.1093/g3journal/jkad121
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2023 | Thesis | IST-REx-ID: 14651 |
Arathoon LS. Investigating inbreeding depression and the self-incompatibility locus of Antirrhinum majus. 2023. doi:10.15479/at:ista:14651
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2023 | Journal Article | IST-REx-ID: 14240 |
Jeschke S, Wojtan C. Generalizing shallow water simulations with dispersive surface waves. ACM Transactions on Graphics. 2023;42(4). doi:10.1145/3592098
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2023 | Research Data | IST-REx-ID: 12817 |
Danzl JG. Research data for the publication “Dense 4D nanoscale reconstruction of living brain tissue.” 2023. doi:10.15479/AT:ISTA:12817
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2023 | Journal Article | IST-REx-ID: 13267 |
Velicky P, Miguel Villalba E, Michalska JM, et al. Dense 4D nanoscale reconstruction of living brain tissue. Nature Methods. 2023;20:1256-1265. doi:10.1038/s41592-023-01936-6
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2023 | Research Data | IST-REx-ID: 13126 |
Danzl JG. Research data for the publication “Imaging brain tissue architecture across millimeter to nanometer scales.” 2023. doi:10.15479/AT:ISTA:13126
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2023 | Journal Article | IST-REx-ID: 14613 |
Lasne C, Elkrewi MN, Toups MA, Layana Franco LA, Macon A, Vicoso B. The scorpionfly (Panorpa cognata) genome highlights conserved and derived features of the peculiar dipteran X chromosome. Molecular Biology and Evolution. 2023;40(12). doi:10.1093/molbev/msad245
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2023 | Journal Article | IST-REx-ID: 14257 |
Michalska JM, Lyudchik J, Velicky P, et al. Imaging brain tissue architecture across millimeter to nanometer scales. Nature Biotechnology. 2023. doi:10.1038/s41587-023-01911-8
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2023 | Conference Abstract | IST-REx-ID: 14748
Chen Y-L, Ly M, Wojtan C. Unified treatment of contact, friction and shock-propagation in rigid body animation. In: Proceedings of the ACM SIGGRAPH/Eurographics Symposium on Computer Animation. Association for Computing Machinery; 2023. doi:10.1145/3606037.3606836
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2023 | Thesis | IST-REx-ID: 12470 |
Michalska JM. A versatile toolbox for the comprehensive analysis of nervous tissue organization with light microscopy. 2023. doi:10.15479/at:ista:12470
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2022 | Journal Article | IST-REx-ID: 12495 |
Iofinova EB, Konstantinov NH, Lampert C. FLEA: Provably robust fair multisource learning from unreliable training data. Transactions on Machine Learning Research. 2022.
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2022 | Thesis | IST-REx-ID: 11128 |
Matejovicova L. Genetic basis of flower colour as a model for adaptive evolution. 2022. doi:10.15479/at:ista:11128
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2022 | Journal Article | IST-REx-ID: 11432 |
Schreck C, Wojtan C. Coupling 3D liquid simulation with 2D wave propagation for large scale water surface animation using the equivalent sources method. Computer Graphics Forum. 2022;41(2):343-353. doi:10.1111/cgf.14478
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2022 | Journal Article | IST-REx-ID: 10826 |
Valperga G, de Bono M. Impairing one sensory modality enhances another by reconfiguring peptidergic signalling in Caenorhabditis elegans. eLife. 2022;11. doi:10.7554/eLife.68040
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2022 | Journal Article | IST-REx-ID: 11155 |
Obr M, Hagen WJH, Dick RA, Yu L, Kotecha A, Schur FK. Exploring high-resolution cryo-ET and subtomogram averaging capabilities of contemporary DEDs. Journal of Structural Biology. 2022;214(2). doi:10.1016/j.jsb.2022.107852
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2022 | Journal Article | IST-REx-ID: 11470 |
Brighi P, Michailidis AA, Abanin DA, Serbyn M. Propagation of many-body localization in an Anderson insulator. Physical Review B. 2022;105(22). doi:10.1103/physrevb.105.l220203
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2022 | Journal Article | IST-REx-ID: 11736 |
Sperl G, Sánchez-Banderas RM, Li M, Wojtan C, Otaduy MA. Estimation of yarn-level simulation models for production fabrics. ACM Transactions on Graphics. 2022;41(4). doi:10.1145/3528223.3530167
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2022 | Journal Article | IST-REx-ID: 12109 |
Pertl F, Sobarzo Ponce JCA, Shafeek LB, Cramer T, Waitukaitis SR. Quantifying nanoscale charge density features of contact-charged surfaces with an FEM/KPFM-hybrid approach. Physical Review Materials. 2022;6(12). doi:10.1103/PhysRevMaterials.6.125605
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2022 | Journal Article | IST-REx-ID: 12138 |
Kravchuk V, Petrova O, Kampjut D, Wojciechowska-Bason A, Breese Z, Sazanov LA. A universal coupling mechanism of respiratory complex I. Nature. 2022;609(7928):808-814. doi:10.1038/s41586-022-05199-7
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2022 | Journal Article | IST-REx-ID: 12142 |
Ojavee SE, Kutalik Z, Robinson MR. Liability-scale heritability estimation for biobank studies of low-prevalence disease. The American Journal of Human Genetics. 2022;109(11):2009-2017. doi:10.1016/j.ajhg.2022.09.011
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2022 | Journal Article | IST-REx-ID: 10284 |
Casillas Perez BE, Pull C, Naiser F, Naderlinger E, Matas J, Cremer S. Early queen infection shapes developmental dynamics and induces long-term disease protection in incipient ant colonies. Ecology Letters. 2022;25(1):89-100. doi:10.1111/ele.13907
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2022 | Journal Article | IST-REx-ID: 11469 |
Brighi P, Michailidis A, Kirova K, Abanin DA, Serbyn M. Localization of a mobile impurity interacting with an Anderson insulator. Physical Review B. 2022;105(22). doi:10.1103/physrevb.105.224208
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2022 | Journal Article | IST-REx-ID: 11411 |
Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. Effects of fine-scale population structure on the distribution of heterozygosity in a long-term study of Antirrhinum majus. Genetics. 2022;221(3). doi:10.1093/genetics/iyac083
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2022 | Journal Article | IST-REx-ID: 12244 |
Colombo G, Cubero RJ, Kanari L, et al. A tool for mapping microglial morphology, morphOMICs, reveals brain-region and sex-dependent phenotypes. Nature Neuroscience. 2022;25(10):1379-1393. doi:10.1038/s41593-022-01167-6
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2022 | Thesis | IST-REx-ID: 12378 |
Colombo G. MorphOMICs, a tool for mapping microglial morphology, reveals brain region- and sex-dependent phenotypes. 2022. doi:10.15479/at:ista:12378
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2022 | Journal Article | IST-REx-ID: 12248 |
Elkrewi MN, Khauratovich U, Toups MA, et al. ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp. Genetics. 2022;222(2). doi:10.1093/genetics/iyac123
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2021 | Journal Article | IST-REx-ID: 10535 |
Bodova K, Szep E, Barton NH. Dynamic maximum entropy provides accurate approximation of structured population dynamics. PLoS Computational Biology. 2021;17(12). doi:10.1371/journal.pcbi.1009661
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2021 | Conference Paper | IST-REx-ID: 11458 |
Peste E-A, Iofinova EB, Vladu A, Alistarh D-A. AC/DC: Alternating Compressed/DeCompressed training of deep neural networks. In: 35th Conference on Neural Information Processing Systems. Vol 34. Curran Associates; 2021:8557-8570.
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2021 | Journal Article | IST-REx-ID: 9168 |
Fraisse C, Sachdeva H. The rates of introgression and barriers to genetic exchange between hybridizing species: Sex chromosomes vs autosomes. Genetics. 2021;217(2). doi:10.1093/genetics/iyaa025
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2021 | Journal Article | IST-REx-ID: 9431 |
Obr M, Ricana CL, Nikulin N, et al. Structure of the mature Rous sarcoma virus lattice reveals a role for IP6 in the formation of the capsid hexamer. Nature Communications. 2021;12(1). doi:10.1038/s41467-021-23506-0
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2021 | Journal Article | IST-REx-ID: 9558 |
Yalniz G, Hof B, Budanur NB. Coarse graining the state space of a turbulent flow using periodic orbits. Physical Review Letters. 2021;126(24). doi:10.1103/PhysRevLett.126.244502
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2021 | Journal Article | IST-REx-ID: 9818 |
Sperl G, Narain R, Wojtan C. Mechanics-aware deformation of yarn pattern geometry. ACM Transactions on Graphics. 2021;40(4). doi:10.1145/3450626.3459816
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2021 | Journal Article | IST-REx-ID: 10167 |
Elkrewi MN, Moldovan MA, Picard MAL, Vicoso B. Schistosome W-Linked genes inform temporal dynamics of sex chromosome evolution and suggest candidate for sex determination. Molecular Biology and Evolution. 2021. doi:10.1093/molbev/msab178
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2021 | Journal Article | IST-REx-ID: 10146
Vercellino I, Sazanov LA. Structure and assembly of the mammalian mitochondrial supercomplex CIII2CIV. Nature. 2021;598(7880):364-367. doi:10.1038/s41586-021-03927-z
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2021 | Thesis | IST-REx-ID: 9418 |
Phuong M. Underspecification in deep learning. 2021. doi:10.15479/AT:ISTA:9418
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2021 | Journal Article | IST-REx-ID: 10290 |
Dimchev GA, Amiri B, Fäßler F, Falcke M, Schur FK. Computational toolbox for ultrastructural quantitative analysis of filament networks in cryo-ET data. Journal of Structural Biology. 2021;213(4). doi:10.1016/j.jsb.2021.107808
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2021 | Journal Article | IST-REx-ID: 10166 |
Huylmans AK, Macon A, Hontoria F, Vicoso B. Transitions to asexuality and evolution of gene expression in Artemia brine shrimp. Proceedings of the Royal Society B: Biological Sciences. 2021;288(1959). doi:10.1098/rspb.2021.1720
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2020 | Conference Paper | IST-REx-ID: 8188 |
Henderson PM, Lampert C. Unsupervised object-centric video generation and decomposition in 3D. In: 34th Conference on Neural Information Processing Systems. Vol 33. Curran Associates; 2020:3106–3117.
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2020 | Journal Article | IST-REx-ID: 8261 |
Zhang X, Schlögl A, Jonas PM. Selective routing of spatial information flow from input to output in hippocampal granule cells. Neuron. 2020;107(6):1212-1225. doi:10.1016/j.neuron.2020.07.006
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2020 | Journal Article | IST-REx-ID: 8535 |
Skrivan T, Soderstrom A, Johansson J, Sprenger C, Museth K, Wojtan C. Wave curves: Simulating Lagrangian water waves on dynamically deforming surfaces. ACM Transactions on Graphics. 2020;39(4). doi:10.1145/3386569.3392466
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2020 | Journal Article | IST-REx-ID: 8581
Pinke G, Zhou L, Sazanov LA. Cryo-EM structure of the entire mammalian F-type ATP synthase. Nature Structural and Molecular Biology. 2020;27(11):1077-1085. doi:10.1038/s41594-020-0503-8
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2020 | Journal Article | IST-REx-ID: 8971 |
Fäßler F, Dimchev GA, Hodirnau V-V, Wan W, Schur FK. Cryo-electron tomography structure of Arp2/3 complex in cells reveals new insights into the branch junction. Nature Communications. 2020;11. doi:10.1038/s41467-020-20286-x
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2020 | Journal Article | IST-REx-ID: 8765 |
Schreck C, Wojtan C. A practical method for animating anisotropic elastoplastic materials. Computer Graphics Forum. 2020;39(2):89-99. doi:10.1111/cgf.13914
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2020 | Thesis | IST-REx-ID: 8353 |
Steiner J. Biochemical and structural investigation of the Mrp antiporter, an ancestor of complex I. 2020. doi:10.15479/AT:ISTA:8353
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2020 | Conference Paper | IST-REx-ID: 8724 |
Konstantinov NH, Frantar E, Alistarh D-A, Lampert C. On the sample complexity of adversarial multi-source PAC learning. In: Proceedings of the 37th International Conference on Machine Learning. Vol 119. ML Research Press; 2020:5416-5425.
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| arXiv
2020 | Journal Article | IST-REx-ID: 5681 |
Hikaru I, Wojtan C, Thuerey N, Igarashi T, Ando R. Simulating liquids on dynamically warping grids. IEEE Transactions on Visualization and Computer Graphics. 2020;26(6):2288-2302. doi:10.1109/TVCG.2018.2883628
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2020 | Thesis | IST-REx-ID: 8390 |
Royer A. Leveraging structure in Computer Vision tasks for flexible Deep Learning models. 2020. doi:10.15479/AT:ISTA:8390
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2020 | Journal Article | IST-REx-ID: 7464 |
Dick RA, Xu C, Morado DR, et al. Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly. PLOS Pathogens. 2020;16(1). doi:10.1371/journal.ppat.1008277
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2020 | Thesis | IST-REx-ID: 8366 |
Guseinov R. Computational design of curved thin shells: From glass façades to programmable matter. 2020. doi:10.15479/AT:ISTA:8366
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