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87 Publications
2022 | Journal Article | IST-REx-ID: 12142 | 
Liability-scale heritability estimation for biobank studies of low-prevalence disease
S.E. Ojavee, Z. Kutalik, M.R. Robinson, The American Journal of Human Genetics 109 (2022) 2009–2017.
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S.E. Ojavee, Z. Kutalik, M.R. Robinson, The American Journal of Human Genetics 109 (2022) 2009–2017.
2022 | Journal Article | IST-REx-ID: 10284 |
Early queen infection shapes developmental dynamics and induces long-term disease protection in incipient ant colonies
B.E. Casillas Perez, C. Pull, F. Naiser, E. Naderlinger, J. Matas, S. Cremer, Ecology Letters 25 (2022) 89–100.
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B.E. Casillas Perez, C. Pull, F. Naiser, E. Naderlinger, J. Matas, S. Cremer, Ecology Letters 25 (2022) 89–100.
2022 | Journal Article | IST-REx-ID: 11469 |
Localization of a mobile impurity interacting with an Anderson insulator
P. Brighi, A. Michailidis, K. Kirova, D.A. Abanin, M. Serbyn, Physical Review B 105 (2022).
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P. Brighi, A. Michailidis, K. Kirova, D.A. Abanin, M. Serbyn, Physical Review B 105 (2022).
2022 | Journal Article | IST-REx-ID: 11411 |
Effects of fine-scale population structure on the distribution of heterozygosity in a long-term study of Antirrhinum majus
P. Surendranadh, L.S. Arathoon, C. Baskett, D. Field, M. Pickup, N.H. Barton, Genetics 221 (2022).
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P. Surendranadh, L.S. Arathoon, C. Baskett, D. Field, M. Pickup, N.H. Barton, Genetics 221 (2022).
2022 | Journal Article | IST-REx-ID: 12244 |
A tool for mapping microglial morphology, morphOMICs, reveals brain-region and sex-dependent phenotypes
G. Colombo, R.J. Cubero, L. Kanari, A. Venturino, R. Schulz, M. Scolamiero, J. Agerberg, H. Mathys, L.-H. Tsai, W. Chachólski, K. Hess, S. Siegert, Nature Neuroscience 25 (2022) 1379–1393.
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G. Colombo, R.J. Cubero, L. Kanari, A. Venturino, R. Schulz, M. Scolamiero, J. Agerberg, H. Mathys, L.-H. Tsai, W. Chachólski, K. Hess, S. Siegert, Nature Neuroscience 25 (2022) 1379–1393.
2022 | Thesis | IST-REx-ID: 12378 |
MorphOMICs, a tool for mapping microglial morphology, reveals brain region- and sex-dependent phenotypes
G. Colombo, MorphOMICs, a Tool for Mapping Microglial Morphology, Reveals Brain Region- and Sex-Dependent Phenotypes, Institute of Science and Technology Austria, 2022.
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G. Colombo, MorphOMICs, a Tool for Mapping Microglial Morphology, Reveals Brain Region- and Sex-Dependent Phenotypes, Institute of Science and Technology Austria, 2022.
2022 | Journal Article | IST-REx-ID: 12248 |
ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp
M.N. Elkrewi, U. Khauratovich, M.A. Toups, V.K. Bett, A. Mrnjavac, A. Macon, C. Fraisse, L. Sax, A.K. Huylmans, F. Hontoria, B. Vicoso, Genetics 222 (2022).
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M.N. Elkrewi, U. Khauratovich, M.A. Toups, V.K. Bett, A. Mrnjavac, A. Macon, C. Fraisse, L. Sax, A.K. Huylmans, F. Hontoria, B. Vicoso, Genetics 222 (2022).
2021 | Journal Article | IST-REx-ID: 10535 |
Dynamic maximum entropy provides accurate approximation of structured population dynamics
K. Bodova, E. Szep, N.H. Barton, PLoS Computational Biology 17 (2021).
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K. Bodova, E. Szep, N.H. Barton, PLoS Computational Biology 17 (2021).
2021 | Conference Paper | IST-REx-ID: 11458 |
AC/DC: Alternating Compressed/DeCompressed training of deep neural networks
E.-A. Peste, E.B. Iofinova, A. Vladu, D.-A. Alistarh, in:, 35th Conference on Neural Information Processing Systems, Curran Associates, 2021, pp. 8557–8570.
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E.-A. Peste, E.B. Iofinova, A. Vladu, D.-A. Alistarh, in:, 35th Conference on Neural Information Processing Systems, Curran Associates, 2021, pp. 8557–8570.
2021 | Journal Article | IST-REx-ID: 9168 |
The rates of introgression and barriers to genetic exchange between hybridizing species: Sex chromosomes vs autosomes
C. Fraisse, H. Sachdeva, Genetics 217 (2021).
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C. Fraisse, H. Sachdeva, Genetics 217 (2021).
2021 | Journal Article | IST-REx-ID: 9431 |
Structure of the mature Rous sarcoma virus lattice reveals a role for IP6 in the formation of the capsid hexamer
M. Obr, C.L. Ricana, N. Nikulin, J.-P.R. Feathers, M. Klanschnig, A. Thader, M.C. Johnson, V.M. Vogt, F.K. Schur, R.A. Dick, Nature Communications 12 (2021).
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M. Obr, C.L. Ricana, N. Nikulin, J.-P.R. Feathers, M. Klanschnig, A. Thader, M.C. Johnson, V.M. Vogt, F.K. Schur, R.A. Dick, Nature Communications 12 (2021).
2021 | Journal Article | IST-REx-ID: 9558 |
Coarse graining the state space of a turbulent flow using periodic orbits
G. Yalniz, B. Hof, N.B. Budanur, Physical Review Letters 126 (2021).
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G. Yalniz, B. Hof, N.B. Budanur, Physical Review Letters 126 (2021).
2021 | Journal Article | IST-REx-ID: 9818 |
Mechanics-aware deformation of yarn pattern geometry
G. Sperl, R. Narain, C. Wojtan, ACM Transactions on Graphics 40 (2021).
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G. Sperl, R. Narain, C. Wojtan, ACM Transactions on Graphics 40 (2021).
2021 | Journal Article | IST-REx-ID: 10167 |
Schistosome W-Linked genes inform temporal dynamics of sex chromosome evolution and suggest candidate for sex determination
M.N. Elkrewi, M.A. Moldovan, M.A.L. Picard, B. Vicoso, Molecular Biology and Evolution (2021).
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M.N. Elkrewi, M.A. Moldovan, M.A.L. Picard, B. Vicoso, Molecular Biology and Evolution (2021).
2021 | Journal Article | IST-REx-ID: 10146
Structure and assembly of the mammalian mitochondrial supercomplex CIII2CIV
I. Vercellino, L.A. Sazanov, Nature 598 (2021) 364–367.
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I. Vercellino, L.A. Sazanov, Nature 598 (2021) 364–367.
2021 | Thesis | IST-REx-ID: 9418 |
Underspecification in deep learning
M. Phuong, Underspecification in Deep Learning, Institute of Science and Technology Austria, 2021.
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M. Phuong, Underspecification in Deep Learning, Institute of Science and Technology Austria, 2021.
2021 | Journal Article | IST-REx-ID: 10290 |
Computational toolbox for ultrastructural quantitative analysis of filament networks in cryo-ET data
G.A. Dimchev, B. Amiri, F. Fäßler, M. Falcke, F.K. Schur, Journal of Structural Biology 213 (2021).
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G.A. Dimchev, B. Amiri, F. Fäßler, M. Falcke, F.K. Schur, Journal of Structural Biology 213 (2021).
2021 | Journal Article | IST-REx-ID: 10166 |
Transitions to asexuality and evolution of gene expression in Artemia brine shrimp
A.K. Huylmans, A. Macon, F. Hontoria, B. Vicoso, Proceedings of the Royal Society B: Biological Sciences 288 (2021).
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A.K. Huylmans, A. Macon, F. Hontoria, B. Vicoso, Proceedings of the Royal Society B: Biological Sciences 288 (2021).
2020 | Conference Paper | IST-REx-ID: 8188 |
Unsupervised object-centric video generation and decomposition in 3D
P.M. Henderson, C. Lampert, in:, 34th Conference on Neural Information Processing Systems, Curran Associates, 2020, pp. 3106–3117.
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P.M. Henderson, C. Lampert, in:, 34th Conference on Neural Information Processing Systems, Curran Associates, 2020, pp. 3106–3117.
2020 | Journal Article | IST-REx-ID: 8261 |
Selective routing of spatial information flow from input to output in hippocampal granule cells
X. Zhang, A. Schlögl, P.M. Jonas, Neuron 107 (2020) 1212–1225.
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X. Zhang, A. Schlögl, P.M. Jonas, Neuron 107 (2020) 1212–1225.
2020 | Journal Article | IST-REx-ID: 8535 |
Wave curves: Simulating Lagrangian water waves on dynamically deforming surfaces
T. Skrivan, A. Soderstrom, J. Johansson, C. Sprenger, K. Museth, C. Wojtan, ACM Transactions on Graphics 39 (2020).
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T. Skrivan, A. Soderstrom, J. Johansson, C. Sprenger, K. Museth, C. Wojtan, ACM Transactions on Graphics 39 (2020).
2020 | Journal Article | IST-REx-ID: 8581
Cryo-EM structure of the entire mammalian F-type ATP synthase
G. Pinke, L. Zhou, L.A. Sazanov, Nature Structural and Molecular Biology 27 (2020) 1077–1085.
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G. Pinke, L. Zhou, L.A. Sazanov, Nature Structural and Molecular Biology 27 (2020) 1077–1085.
2020 | Journal Article | IST-REx-ID: 8971 |
Cryo-electron tomography structure of Arp2/3 complex in cells reveals new insights into the branch junction
F. Fäßler, G.A. Dimchev, V.-V. Hodirnau, W. Wan, F.K. Schur, Nature Communications 11 (2020).
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F. Fäßler, G.A. Dimchev, V.-V. Hodirnau, W. Wan, F.K. Schur, Nature Communications 11 (2020).
2020 | Journal Article | IST-REx-ID: 8765 |
A practical method for animating anisotropic elastoplastic materials
C. Schreck, C. Wojtan, Computer Graphics Forum 39 (2020) 89–99.
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C. Schreck, C. Wojtan, Computer Graphics Forum 39 (2020) 89–99.
2020 | Thesis | IST-REx-ID: 8353 |
Biochemical and structural investigation of the Mrp antiporter, an ancestor of complex I
J. Steiner, Biochemical and Structural Investigation of the Mrp Antiporter, an Ancestor of Complex I, Institute of Science and Technology Austria, 2020.
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J. Steiner, Biochemical and Structural Investigation of the Mrp Antiporter, an Ancestor of Complex I, Institute of Science and Technology Austria, 2020.
2020 | Conference Paper | IST-REx-ID: 8724 |
On the sample complexity of adversarial multi-source PAC learning
N.H. Konstantinov, E. Frantar, D.-A. Alistarh, C. Lampert, in:, Proceedings of the 37th International Conference on Machine Learning, ML Research Press, 2020, pp. 5416–5425.
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N.H. Konstantinov, E. Frantar, D.-A. Alistarh, C. Lampert, in:, Proceedings of the 37th International Conference on Machine Learning, ML Research Press, 2020, pp. 5416–5425.
2020 | Journal Article | IST-REx-ID: 5681 |
Simulating liquids on dynamically warping grids
I. Hikaru, C. Wojtan, N. Thuerey, T. Igarashi, R. Ando, IEEE Transactions on Visualization and Computer Graphics 26 (2020) 2288–2302.
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I. Hikaru, C. Wojtan, N. Thuerey, T. Igarashi, R. Ando, IEEE Transactions on Visualization and Computer Graphics 26 (2020) 2288–2302.
2020 | Thesis | IST-REx-ID: 8390 |
Leveraging structure in Computer Vision tasks for flexible Deep Learning models
A. Royer, Leveraging Structure in Computer Vision Tasks for Flexible Deep Learning Models, Institute of Science and Technology Austria, 2020.
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A. Royer, Leveraging Structure in Computer Vision Tasks for Flexible Deep Learning Models, Institute of Science and Technology Austria, 2020.
2020 | Journal Article | IST-REx-ID: 7464 |
Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly
R.A. Dick, C. Xu, D.R. Morado, V. Kravchuk, C.L. Ricana, T.D. Lyddon, A.M. Broad, J.R. Feathers, M.C. Johnson, V.M. Vogt, J.R. Perilla, J.A.G. Briggs, F.K. Schur, PLOS Pathogens 16 (2020).
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R.A. Dick, C. Xu, D.R. Morado, V. Kravchuk, C.L. Ricana, T.D. Lyddon, A.M. Broad, J.R. Feathers, M.C. Johnson, V.M. Vogt, J.R. Perilla, J.A.G. Briggs, F.K. Schur, PLOS Pathogens 16 (2020).
2020 | Thesis | IST-REx-ID: 8366 |
Computational design of curved thin shells: From glass façades to programmable matter
R. Guseinov, Computational Design of Curved Thin Shells: From Glass Façades to Programmable Matter, Institute of Science and Technology Austria, 2020.
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R. Guseinov, Computational Design of Curved Thin Shells: From Glass Façades to Programmable Matter, Institute of Science and Technology Austria, 2020.
2020 | Journal Article | IST-REx-ID: 8562 |
Computational design of cold bent glass façades
K. Gavriil, R. Guseinov, J. Perez Rodriguez, D. Pellis, P.M. Henderson, F. Rist, H. Pottmann, B. Bickel, ACM Transactions on Graphics 39 (2020).
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K. Gavriil, R. Guseinov, J. Perez Rodriguez, D. Pellis, P.M. Henderson, F. Rist, H. Pottmann, B. Bickel, ACM Transactions on Graphics 39 (2020).
2020 | Research Data | IST-REx-ID: 8761 |
Supplementary data for "Computational design of cold bent glass façades"
R. Guseinov, (2020).
[Published Version]
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R. Guseinov, (2020).
2020 | Journal Article | IST-REx-ID: 8384 |
A model for soap film dynamics with evolving thickness
S. Ishida, P. Synak, F. Narita, T. Hachisuka, C. Wojtan, ACM Transactions on Graphics 39 (2020).
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S. Ishida, P. Synak, F. Narita, T. Hachisuka, C. Wojtan, ACM Transactions on Graphics 39 (2020).
2020 | Journal Article | IST-REx-ID: 8385 |
Homogenized yarn-level cloth
G. Sperl, R. Narain, C. Wojtan, ACM Transactions on Graphics 39 (2020).
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G. Sperl, R. Narain, C. Wojtan, ACM Transactions on Graphics 39 (2020).
2020 | Journal Article | IST-REx-ID: 8586 |
3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy
F. Fäßler, B. Zens, R. Hauschild, F.K. Schur, Journal of Structural Biology 212 (2020).
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F. Fäßler, B. Zens, R. Hauschild, F.K. Schur, Journal of Structural Biology 212 (2020).
2019 | Journal Article | IST-REx-ID: 6442 |
Fundamental solutions for water wave animation
C. Schreck, C. Hafner, C. Wojtan, ACM Transactions on Graphics 38 (2019).
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C. Schreck, C. Hafner, C. Wojtan, ACM Transactions on Graphics 38 (2019).
2019 | Journal Article | IST-REx-ID: 6859
Structure and conformational plasticity of the intact Thermus thermophilus V/A-type ATPase
L. Zhou, L.A. Sazanov, Science 365 (2019).
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L. Zhou, L.A. Sazanov, Science 365 (2019).
2019 | Journal Article | IST-REx-ID: 6978 |
Geometry of transient chaos in streamwise-localized pipe flow turbulence
N.B. Budanur, A. Dogra, B. Hof, Physical Review Fluids 4 (2019) 102401.
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N.B. Budanur, A. Dogra, B. Hof, Physical Review Fluids 4 (2019) 102401.
2019 | Journal Article | IST-REx-ID: 6418 |
Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome
A.K. Huylmans, M.A. Toups, A. Macon, W.J. Gammerdinger, B. Vicoso, Genome Biology and Evolution 11 (2019) 1033–1044.
[Published Version]
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A.K. Huylmans, M.A. Toups, A. Macon, W.J. Gammerdinger, B. Vicoso, Genome Biology and Evolution 11 (2019) 1033–1044.
2019 | Thesis | IST-REx-ID: 6435 |
Collective defenses of garden ants against a fungal pathogen
B.E. Casillas Perez, Collective Defenses of Garden Ants against a Fungal Pathogen, Institute of Science and Technology Austria, 2019.
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B.E. Casillas Perez, Collective Defenses of Garden Ants against a Fungal Pathogen, Institute of Science and Technology Austria, 2019.
2019 | Journal Article | IST-REx-ID: 6848 |
Structure and mechanism of mitochondrial proton-translocating transhydrogenase
D. Kampjut, L.A. Sazanov, Nature 573 (2019) 291–295.
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D. Kampjut, L.A. Sazanov, Nature 573 (2019) 291–295.
2018 | Journal Article | IST-REx-ID: 44 |
Quantum scarred eigenstates in a Rydberg atom chain: Entanglement, breakdown of thermalization, and stability to perturbations
C.J. Turner, A. Michailidis, D.A. Abanin, M. Serbyn, Z. Papić, Physical Review B 98 (2018).
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C.J. Turner, A. Michailidis, D.A. Abanin, M. Serbyn, Z. Papić, Physical Review B 98 (2018).
2018 | Journal Article | IST-REx-ID: 134 |
Water surface wavelets
S. Jeschke, T. Skrivan, M. Mueller Fischer, N. Chentanez, M. Macklin, C. Wojtan, ACM Transactions on Graphics 37 (2018).
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S. Jeschke, T. Skrivan, M. Mueller Fischer, N. Chentanez, M. Macklin, C. Wojtan, ACM Transactions on Graphics 37 (2018).
2017 | Journal Article | IST-REx-ID: 470 |
Water wave packets
S. Jeschke, C. Wojtan, ACM Transactions on Graphics 36 (2017).
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S. Jeschke, C. Wojtan, ACM Transactions on Graphics 36 (2017).
2017 | Journal Article | IST-REx-ID: 1118 |
Phase-locked inhibition, but not excitation, underlies hippocampal ripple oscillations in awake mice in vivo
J. Gan, S.-M. Weng, A. Pernia-Andrade, J.L. Csicsvari, P.M. Jonas, Neuron 93 (2017) 308–314.
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J. Gan, S.-M. Weng, A. Pernia-Andrade, J.L. Csicsvari, P.M. Jonas, Neuron 93 (2017) 308–314.
2017 | Journal Article | IST-REx-ID: 1087 |
Speed and structure of turbulent fronts in pipe flow
B. Song, D. Barkley, B. Hof, M. Avila, Journal of Fluid Mechanics 813 (2017) 1045–1059.
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B. Song, D. Barkley, B. Hof, M. Avila, Journal of Fluid Mechanics 813 (2017) 1045–1059.
2017 | Journal Article | IST-REx-ID: 804 |
Overcoming the limitations of the MARTINI force field in simulations of polysaccharides
P.S. Schmalhorst, F. Deluweit, R. Scherrers, C.-P.J. Heisenberg, M.K. Sikora, Journal of Chemical Theory and Computation 13 (2017) 5039–5053.
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P.S. Schmalhorst, F. Deluweit, R. Scherrers, C.-P.J. Heisenberg, M.K. Sikora, Journal of Chemical Theory and Computation 13 (2017) 5039–5053.
2017 | Journal Article | IST-REx-ID: 727
Load adaptation of lamellipodial actin networks
J. Mueller, G. Szep, M. Nemethova, I. de Vries, A. Lieber, C. Winkler, K. Kruse, J. Small, C. Schmeiser, K. Keren, R. Hauschild, M.K. Sixt, Cell 171 (2017) 188–200.
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J. Mueller, G. Szep, M. Nemethova, I. de Vries, A. Lieber, C. Winkler, K. Kruse, J. Small, C. Schmeiser, K. Keren, R. Hauschild, M.K. Sixt, Cell 171 (2017) 188–200.
2016 | Journal Article | IST-REx-ID: 1350 |
Synaptic mechanisms of pattern completion in the hippocampal CA3 network
J. Guzmán, A. Schlögl, M. Frotscher, P.M. Jonas, Science 353 (2016) 1117–1123.
[Preprint]
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J. Guzmán, A. Schlögl, M. Frotscher, P.M. Jonas, Science 353 (2016) 1117–1123.
2016 | Conference Paper | IST-REx-ID: 1363 |
Generalized non-reflecting boundaries for fluid re-simulation
M. Bojsen-Hansen, C. Wojtan, in:, ACM, 2016.
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M. Bojsen-Hansen, C. Wojtan, in:, ACM, 2016.
2013 | Journal Article | IST-REx-ID: 2944
Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates.
S. Aeschbacher, A. Futschik, M. Beaumont, Molecular Ecology 22 (2013) 987–1002.
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S. Aeschbacher, A. Futschik, M. Beaumont, Molecular Ecology 22 (2013) 987–1002.
2012 | Journal Article | IST-REx-ID: 2962 |
A novel approach for choosing summary statistics in approximate Bayesian computation
S. Aeschbacher, M. Beaumont, A. Futschik, Genetics 192 (2012) 1027–1047.
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S. Aeschbacher, M. Beaumont, A. Futschik, Genetics 192 (2012) 1027–1047.