Please note that LibreCat no longer supports Internet Explorer versions 8 or 9 (or earlier).
We recommend upgrading to the latest Internet Explorer, Google Chrome, or Firefox.
87 Publications
2023 | Thesis | IST-REx-ID: 12470 | 
Michalska JM. A versatile toolbox for the comprehensive analysis of nervous tissue organization with light microscopy. 2023. doi:10.15479/at:ista:12470
[Published Version]
View
| Files available
| DOI
2022 | Journal Article | IST-REx-ID: 12495 |
Iofinova EB, Konstantinov NH, Lampert C. FLEA: Provably robust fair multisource learning from unreliable training data. Transactions on Machine Learning Research. 2022.
[Published Version]
View
| Files available
| Download Published Version (ext.)
| arXiv
2022 | Thesis | IST-REx-ID: 11128 |
Matejovicova L. Genetic basis of flower colour as a model for adaptive evolution. 2022. doi:10.15479/at:ista:11128
[Published Version]
View
| Files available
| DOI
2022 | Journal Article | IST-REx-ID: 11432 |
Schreck C, Wojtan C. Coupling 3D liquid simulation with 2D wave propagation for large scale water surface animation using the equivalent sources method. Computer Graphics Forum. 2022;41(2):343-353. doi:10.1111/cgf.14478
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
| WoS
2022 | Journal Article | IST-REx-ID: 10826 |
Valperga G, de Bono M. Impairing one sensory modality enhances another by reconfiguring peptidergic signalling in Caenorhabditis elegans. eLife. 2022;11. doi:10.7554/eLife.68040
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2022 | Journal Article | IST-REx-ID: 11155 |
Obr M, Hagen WJH, Dick RA, Yu L, Kotecha A, Schur FK. Exploring high-resolution cryo-ET and subtomogram averaging capabilities of contemporary DEDs. Journal of Structural Biology. 2022;214(2). doi:10.1016/j.jsb.2022.107852
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2022 | Journal Article | IST-REx-ID: 11470 |
Brighi P, Michailidis AA, Abanin DA, Serbyn M. Propagation of many-body localization in an Anderson insulator. Physical Review B. 2022;105(22). doi:10.1103/physrevb.105.l220203
[Preprint]
View
| Files available
| DOI
| Download Preprint (ext.)
| WoS
| arXiv
2022 | Journal Article | IST-REx-ID: 11736 |
Sperl G, Sánchez-Banderas RM, Li M, Wojtan C, Otaduy MA. Estimation of yarn-level simulation models for production fabrics. ACM Transactions on Graphics. 2022;41(4). doi:10.1145/3528223.3530167
[Published Version]
View
| Files available
| DOI
| Download Published Version (ext.)
| WoS
2022 | Journal Article | IST-REx-ID: 12109 |
Pertl F, Sobarzo Ponce JCA, Shafeek LB, Cramer T, Waitukaitis SR. Quantifying nanoscale charge density features of contact-charged surfaces with an FEM/KPFM-hybrid approach. Physical Review Materials. 2022;6(12). doi:10.1103/PhysRevMaterials.6.125605
[Preprint]
View
| DOI
| Download Preprint (ext.)
| WoS
| arXiv
2022 | Journal Article | IST-REx-ID: 12142 |
Ojavee SE, Kutalik Z, Robinson MR. Liability-scale heritability estimation for biobank studies of low-prevalence disease. The American Journal of Human Genetics. 2022;109(11):2009-2017. doi:10.1016/j.ajhg.2022.09.011
[Published Version]
View
| Files available
| DOI
| WoS
2022 | Journal Article | IST-REx-ID: 10284 |
Casillas Perez BE, Pull C, Naiser F, Naderlinger E, Matas J, Cremer S. Early queen infection shapes developmental dynamics and induces long-term disease protection in incipient ant colonies. Ecology Letters. 2022;25(1):89-100. doi:10.1111/ele.13907
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2022 | Journal Article | IST-REx-ID: 11469 |
Brighi P, Michailidis A, Kirova K, Abanin DA, Serbyn M. Localization of a mobile impurity interacting with an Anderson insulator. Physical Review B. 2022;105(22). doi:10.1103/physrevb.105.224208
[Preprint]
View
| Files available
| DOI
| Download Preprint (ext.)
| WoS
| arXiv
2022 | Journal Article | IST-REx-ID: 11411 |
Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. Effects of fine-scale population structure on the distribution of heterozygosity in a long-term study of Antirrhinum majus. Genetics. 2022;221(3). doi:10.1093/genetics/iyac083
[Submitted Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2022 | Journal Article | IST-REx-ID: 12138 |
Kravchuk V, Petrova O, Kampjut D, Wojciechowska-Bason A, Breese Z, Sazanov LA. A universal coupling mechanism of respiratory complex I. Nature. 2022;609(7928):808-814. doi:10.1038/s41586-022-05199-7
[Submitted Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2022 | Journal Article | IST-REx-ID: 12244 |
Colombo G, Cubero RJ, Kanari L, et al. A tool for mapping microglial morphology, morphOMICs, reveals brain-region and sex-dependent phenotypes. Nature Neuroscience. 2022;25(10):1379-1393. doi:10.1038/s41593-022-01167-6
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2022 | Thesis | IST-REx-ID: 12378 |
Colombo G. MorphOMICs, a tool for mapping microglial morphology, reveals brain region- and sex-dependent phenotypes. 2022. doi:10.15479/at:ista:12378
[Published Version]
View
| Files available
| DOI
2022 | Journal Article | IST-REx-ID: 12248 |
Elkrewi MN, Khauratovich U, Toups MA, et al. ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp. Genetics. 2022;222(2). doi:10.1093/genetics/iyac123
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2021 | Journal Article | IST-REx-ID: 10535 |
Bodova K, Szep E, Barton NH. Dynamic maximum entropy provides accurate approximation of structured population dynamics. PLoS Computational Biology. 2021;17(12). doi:10.1371/journal.pcbi.1009661
[Published Version]
View
| Files available
| DOI
| PubMed | Europe PMC
| arXiv
2021 | Conference Paper | IST-REx-ID: 11458 |
Peste E-A, Iofinova EB, Vladu A, Alistarh D-A. AC/DC: Alternating Compressed/DeCompressed training of deep neural networks. In: 35th Conference on Neural Information Processing Systems. Vol 34. Curran Associates; 2021:8557-8570.
[Published Version]
View
| Files available
| Download Published Version (ext.)
| arXiv
2021 | Journal Article | IST-REx-ID: 9168 |
Fraisse C, Sachdeva H. The rates of introgression and barriers to genetic exchange between hybridizing species: Sex chromosomes vs autosomes. Genetics. 2021;217(2). doi:10.1093/genetics/iyaa025
[Published Version]
View
| DOI
| Download Published Version (ext.)
| WoS
2021 | Journal Article | IST-REx-ID: 9431 |
Obr M, Ricana CL, Nikulin N, et al. Structure of the mature Rous sarcoma virus lattice reveals a role for IP6 in the formation of the capsid hexamer. Nature Communications. 2021;12(1). doi:10.1038/s41467-021-23506-0
[Published Version]
View
| Files available
| DOI
| WoS
2021 | Journal Article | IST-REx-ID: 9558 |
Yalniz G, Hof B, Budanur NB. Coarse graining the state space of a turbulent flow using periodic orbits. Physical Review Letters. 2021;126(24). doi:10.1103/PhysRevLett.126.244502
[Preprint]
View
| Files available
| DOI
| Download Preprint (ext.)
| WoS
| arXiv
2021 | Journal Article | IST-REx-ID: 9818 |
Sperl G, Narain R, Wojtan C. Mechanics-aware deformation of yarn pattern geometry. ACM Transactions on Graphics. 2021;40(4). doi:10.1145/3450626.3459816
[Published Version]
View
| Files available
| DOI
| Download Published Version (ext.)
| WoS
2021 | Journal Article | IST-REx-ID: 10167 |
Elkrewi MN, Moldovan MA, Picard MAL, Vicoso B. Schistosome W-Linked genes inform temporal dynamics of sex chromosome evolution and suggest candidate for sex determination. Molecular Biology and Evolution. 2021. doi:10.1093/molbev/msab178
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2021 | Journal Article | IST-REx-ID: 10146
Vercellino I, Sazanov LA. Structure and assembly of the mammalian mitochondrial supercomplex CIII2CIV. Nature. 2021;598(7880):364-367. doi:10.1038/s41586-021-03927-z
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2021 | Thesis | IST-REx-ID: 9418 |
Phuong M. Underspecification in deep learning. 2021. doi:10.15479/AT:ISTA:9418
[Published Version]
View
| Files available
| DOI
2021 | Journal Article | IST-REx-ID: 10290 |
Dimchev GA, Amiri B, Fäßler F, Falcke M, Schur FK. Computational toolbox for ultrastructural quantitative analysis of filament networks in cryo-ET data. Journal of Structural Biology. 2021;213(4). doi:10.1016/j.jsb.2021.107808
[Published Version]
View
| Files available
| DOI
| WoS
2021 | Journal Article | IST-REx-ID: 10166 |
Huylmans AK, Macon A, Hontoria F, Vicoso B. Transitions to asexuality and evolution of gene expression in Artemia brine shrimp. Proceedings of the Royal Society B: Biological Sciences. 2021;288(1959). doi:10.1098/rspb.2021.1720
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2020 | Conference Paper | IST-REx-ID: 8188 |
Henderson PM, Lampert C. Unsupervised object-centric video generation and decomposition in 3D. In: 34th Conference on Neural Information Processing Systems. Vol 33. Curran Associates; 2020:3106–3117.
[Preprint]
View
| Download Preprint (ext.)
| arXiv
2020 | Journal Article | IST-REx-ID: 8261 |
Zhang X, Schlögl A, Jonas PM. Selective routing of spatial information flow from input to output in hippocampal granule cells. Neuron. 2020;107(6):1212-1225. doi:10.1016/j.neuron.2020.07.006
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2020 | Journal Article | IST-REx-ID: 8535 |
Skrivan T, Soderstrom A, Johansson J, Sprenger C, Museth K, Wojtan C. Wave curves: Simulating Lagrangian water waves on dynamically deforming surfaces. ACM Transactions on Graphics. 2020;39(4). doi:10.1145/3386569.3392466
[Published Version]
View
| Files available
| DOI
| WoS
2020 | Journal Article | IST-REx-ID: 8581
Pinke G, Zhou L, Sazanov LA. Cryo-EM structure of the entire mammalian F-type ATP synthase. Nature Structural and Molecular Biology. 2020;27(11):1077-1085. doi:10.1038/s41594-020-0503-8
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2020 | Journal Article | IST-REx-ID: 8971 |
Fäßler F, Dimchev GA, Hodirnau V-V, Wan W, Schur FK. Cryo-electron tomography structure of Arp2/3 complex in cells reveals new insights into the branch junction. Nature Communications. 2020;11. doi:10.1038/s41467-020-20286-x
[Published Version]
View
| Files available
| DOI
| WoS
2020 | Journal Article | IST-REx-ID: 8765 |
Schreck C, Wojtan C. A practical method for animating anisotropic elastoplastic materials. Computer Graphics Forum. 2020;39(2):89-99. doi:10.1111/cgf.13914
[Submitted Version]
View
| Files available
| DOI
| WoS
2020 | Thesis | IST-REx-ID: 8353 |
Steiner J. Biochemical and structural investigation of the Mrp antiporter, an ancestor of complex I. 2020. doi:10.15479/AT:ISTA:8353
View
| Files available
| DOI
2020 | Conference Paper | IST-REx-ID: 8724 |
Konstantinov NH, Frantar E, Alistarh D-A, Lampert C. On the sample complexity of adversarial multi-source PAC learning. In: Proceedings of the 37th International Conference on Machine Learning. Vol 119. ML Research Press; 2020:5416-5425.
[Published Version]
View
| Files available
| arXiv
2020 | Journal Article | IST-REx-ID: 5681 |
Hikaru I, Wojtan C, Thuerey N, Igarashi T, Ando R. Simulating liquids on dynamically warping grids. IEEE Transactions on Visualization and Computer Graphics. 2020;26(6):2288-2302. doi:10.1109/TVCG.2018.2883628
[Submitted Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2020 | Thesis | IST-REx-ID: 8390 |
Royer A. Leveraging structure in Computer Vision tasks for flexible Deep Learning models. 2020. doi:10.15479/AT:ISTA:8390
[Published Version]
View
| Files available
| DOI
2020 | Journal Article | IST-REx-ID: 7464 |
Dick RA, Xu C, Morado DR, et al. Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly. PLOS Pathogens. 2020;16(1). doi:10.1371/journal.ppat.1008277
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2020 | Thesis | IST-REx-ID: 8366 |
Guseinov R. Computational design of curved thin shells: From glass façades to programmable matter. 2020. doi:10.15479/AT:ISTA:8366
[Published Version]
View
| Files available
| DOI
2020 | Journal Article | IST-REx-ID: 8562 |
Gavriil K, Guseinov R, Perez Rodriguez J, et al. Computational design of cold bent glass façades. ACM Transactions on Graphics. 2020;39(6). doi:10.1145/3414685.3417843
[Submitted Version]
View
| Files available
| DOI
| WoS
| arXiv
2020 | Research Data | IST-REx-ID: 8761 |
Guseinov R. Supplementary data for “Computational design of cold bent glass façades.” 2020. doi:10.15479/AT:ISTA:8761
[Published Version]
View
| Files available
| DOI
2020 | Journal Article | IST-REx-ID: 8384 |
Ishida S, Synak P, Narita F, Hachisuka T, Wojtan C. A model for soap film dynamics with evolving thickness. ACM Transactions on Graphics. 2020;39(4). doi:10.1145/3386569.3392405
[Submitted Version]
View
| Files available
| DOI
| Download Submitted Version (ext.)
| WoS
2020 | Journal Article | IST-REx-ID: 8385 |
Sperl G, Narain R, Wojtan C. Homogenized yarn-level cloth. ACM Transactions on Graphics. 2020;39(4). doi:10.1145/3386569.3392412
[Submitted Version]
View
| Files available
| DOI
| Download Submitted Version (ext.)
| WoS
2020 | Journal Article | IST-REx-ID: 8586 |
Fäßler F, Zens B, Hauschild R, Schur FK. 3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy. Journal of Structural Biology. 2020;212(3). doi:10.1016/j.jsb.2020.107633
[Published Version]
View
| Files available
| DOI
| WoS
2019 | Journal Article | IST-REx-ID: 6442 |
Schreck C, Hafner C, Wojtan C. Fundamental solutions for water wave animation. ACM Transactions on Graphics. 2019;38(4). doi:10.1145/3306346.3323002
[Submitted Version]
View
| Files available
| DOI
| WoS
2019 | Journal Article | IST-REx-ID: 6859
Zhou L, Sazanov LA. Structure and conformational plasticity of the intact Thermus thermophilus V/A-type ATPase. Science. 2019;365(6455). doi:10.1126/science.aaw9144
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2019 | Journal Article | IST-REx-ID: 6978 |
Budanur NB, Dogra A, Hof B. Geometry of transient chaos in streamwise-localized pipe flow turbulence. Physical Review Fluids. 2019;4(10):102401. doi:10.1103/PhysRevFluids.4.102401
[Preprint]
View
| DOI
| Download Preprint (ext.)
| WoS
| arXiv
2019 | Journal Article | IST-REx-ID: 6418 |
Huylmans AK, Toups MA, Macon A, Gammerdinger WJ, Vicoso B. Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome. Genome biology and evolution. 2019;11(4):1033-1044. doi:10.1093/gbe/evz053
[Published Version]
View
| Files available
| DOI
| WoS
2019 | Thesis | IST-REx-ID: 6435 |
Casillas Perez BE. Collective defenses of garden ants against a fungal pathogen. 2019. doi:10.15479/AT:ISTA:6435
[Published Version]
View
| Files available
| DOI
2019 | Journal Article | IST-REx-ID: 6848 |
Kampjut D, Sazanov LA. Structure and mechanism of mitochondrial proton-translocating transhydrogenase. Nature. 2019;573(7773):291–295. doi:10.1038/s41586-019-1519-2
[Submitted Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2018 | Journal Article | IST-REx-ID: 44 |
Turner CJ, Michailidis A, Abanin DA, Serbyn M, Papić Z. Quantum scarred eigenstates in a Rydberg atom chain: Entanglement, breakdown of thermalization, and stability to perturbations. Physical Review B. 2018;98(15). doi:10.1103/PhysRevB.98.155134
[Preprint]
View
| DOI
| Download Preprint (ext.)
| WoS
| arXiv
2018 | Journal Article | IST-REx-ID: 134 |
Jeschke S, Skrivan T, Mueller Fischer M, Chentanez N, Macklin M, Wojtan C. Water surface wavelets. ACM Transactions on Graphics. 2018;37(4). doi:10.1145/3197517.3201336
[Published Version]
View
| Files available
| DOI
| WoS
2017 | Journal Article | IST-REx-ID: 470 |
Jeschke S, Wojtan C. Water wave packets. ACM Transactions on Graphics. 2017;36(4). doi:10.1145/3072959.3073678
[Published Version]
View
| Files available
| DOI
2017 | Journal Article | IST-REx-ID: 1118 |
Gan J, Weng S-M, Pernia-Andrade A, Csicsvari JL, Jonas PM. Phase-locked inhibition, but not excitation, underlies hippocampal ripple oscillations in awake mice in vivo. Neuron. 2017;93(2):308-314. doi:10.1016/j.neuron.2016.12.018
[Published Version]
View
| Files available
| DOI
| WoS
2017 | Journal Article | IST-REx-ID: 1087 |
Song B, Barkley D, Hof B, Avila M. Speed and structure of turbulent fronts in pipe flow. Journal of Fluid Mechanics. 2017;813:1045-1059. doi:10.1017/jfm.2017.14
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
| WoS
2017 | Journal Article | IST-REx-ID: 804 |
Schmalhorst PS, Deluweit F, Scherrers R, Heisenberg C-PJ, Sikora MK. Overcoming the limitations of the MARTINI force field in simulations of polysaccharides. Journal of Chemical Theory and Computation. 2017;13(10):5039-5053. doi:10.1021/acs.jctc.7b00374
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
| WoS
2017 | Journal Article | IST-REx-ID: 727
Mueller J, Szep G, Nemethova M, et al. Load adaptation of lamellipodial actin networks. Cell. 2017;171(1):188-200. doi:10.1016/j.cell.2017.07.051
View
| DOI
| WoS
2016 | Journal Article | IST-REx-ID: 1350 |
Guzmán J, Schlögl A, Frotscher M, Jonas PM. Synaptic mechanisms of pattern completion in the hippocampal CA3 network. Science. 2016;353(6304):1117-1123. doi:10.1126/science.aaf1836
[Preprint]
View
| Files available
| DOI
2016 | Conference Paper | IST-REx-ID: 1363 |
Bojsen-Hansen M, Wojtan C. Generalized non-reflecting boundaries for fluid re-simulation. In: Vol 35. ACM; 2016. doi:10.1145/2897824.2925963
[Published Version]
View
| Files available
| DOI
2013 | Journal Article | IST-REx-ID: 2944
Aeschbacher S, Futschik A, Beaumont M. Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates. . Molecular Ecology. 2013;22(4):987-1002. doi:10.1111/mec.12165
View
| Files available
| DOI
2012 | Journal Article | IST-REx-ID: 2962 |
Aeschbacher S, Beaumont M, Futschik A. A novel approach for choosing summary statistics in approximate Bayesian computation. Genetics. 2012;192(3):1027-1047. doi:10.1534/genetics.112.143164
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
| PubMed | Europe PMC