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182 Publications

2021 | Thesis | IST-REx-ID: 9728
Agrawal N. 2021. Transition to turbulence and drag reduction in particle-laden pipe flows. IST Austria.
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2021 | Journal Article | IST-REx-ID: 9642 | OA
Venturino A, Schulz R, De Jesús-Cortés H, Maes ME, Nagy B, Reilly-Andújar F, Colombo G, Cubero RJ, Schoot Uiterkamp FE, Bear MF, Siegert S. 2021. Microglia enable mature perineuronal nets disassembly upon anesthetic ketamine exposure or 60-Hz light entrainment in the healthy brain. Cell Reports. 36(1), 109313.
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2021 | Journal Article | IST-REx-ID: 8910 | OA
Valentini M, Peñaranda F, Hofmann AC, Brauns M, Hauschild R, Krogstrup P, San-Jose P, Prada E, Aguado R, Katsaros G. 2021. Nontopological zero-bias peaks in full-shell nanowires induced by flux-tunable Andreev states. Science. 373(6550), 82–88.
View | DOI | Download Submitted Version (ext.) | arXiv
 
2021 | Journal Article | IST-REx-ID: 9603 | OA
Contreras X, Amberg N, Davaatseren A, Hansen AH, Sonntag J, Andersen L, Bernthaler T, Streicher C, Heger A-M, Johnson RL, Schwarz LA, Luo L, Rülicke T, Hippenmeyer S. 2021. A genome-wide library of MADM mice for single-cell genetic mosaic analysis. Cell Reports. 35(12), 109274.
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2021 | Journal Article | IST-REx-ID: 9558 | OA
Yalniz G, Hof B, Budanur NB. 2021. Coarse graining the state space of a turbulent flow using periodic orbits. Physical Review Letters. 126(24), 244502.
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2021 | Journal Article | IST-REx-ID: 9540 | OA
Prattes M, Grishkovskaya I, Hodirnau V-V, Rössler I, Klein I, Hetzmannseder C, Zisser G, Gruber CC, Gruber K, Haselbach D, Bergler H. 2021. Structural basis for inhibition of the AAA-ATPase Drg1 by diazaborine. Nature Communications. 12(1), 3483.
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2021 | Journal Article | IST-REx-ID: 9449 | OA
Jirovec D, Hofmann AC, Ballabio A, Mutter PM, Tavani Giulio, Botifoll M, Crippa A, Kukucka J, Sagi O, Martins F, Saez Mollejo J, Prieto Gonzalez I, Borovkov M, Arbio J, Chrastina D, Isella G, Katsaros G. 2021. A singlet-triplet hole spin qubit in planar Ge. Nature Materials.
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2021 | Journal Article | IST-REx-ID: 8909 | OA
Jirovec D, Hofmann AC, Ballabio A, Mutter PM, Tavani G, Botifoll M, Crippa A, Kukucka J, Sagi O, Martins F, Saez Mollejo J, Prieto Gonzalez I, Borovkov M, Arbiol J, Chrastina D, Isella G, Katsaros G. 2021. A singlet triplet hole spin qubit in planar Ge. Nature Materials.
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2021 | Thesis | IST-REx-ID: 9562
Kleindienst D. 2021. 2B or not 2B: Hippocampal asymmetries mediated by NMDA receptor subunit GluN2B C-terminus and high-throughput image analysis by Deep-Learning. IST Austria.
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2021 | Journal Article | IST-REx-ID: 9438
Vandael DH, Okamoto Y, Borges Merjane C, Vargas Barroso VM, Suter B, Jonas PM. 2021. Subcellular patch-clamp techniques for single-bouton stimulation and simultaneous pre- and postsynaptic recording at cortical synapses. Nature Protocols. 16(6), 2947–2967.
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2021 | Thesis | IST-REx-ID: 9418 | OA
Phuong M. 2021. Underspecification in Deep Learning. IST Austria.
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2021 | Journal Article | IST-REx-ID: 9431 | OA
Obr M, Ricana CL, Nikulin N, Feathers J-PR, Klanschnig M, Thader A, Johnson MC, Vogt VM, Schur FK, Dick RA. 2021. Structure of the mature Rous sarcoma virus lattice reveals a role for IP6 in the formation of the capsid hexamer. Nature Communications. 12(1), 3226.
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2021 | Journal Article | IST-REx-ID: 9429 | OA
Morandell J, Schwarz LA, Basilico B, Tasciyan S, Dimchev GA, Nicolas A, Sommer CM, Kreuzinger C, Dotter C, Knaus L, Dobler Z, Cacci E, Schur FK, Danzl JG, Novarino G. 2021. Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. Nature Communications. 12(1), 3058.
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2021 | Journal Article | IST-REx-ID: 9330 | OA
Schöpf CL, Ablinger C, Geisler SM, Stanika RI, Campiglio M, Kaufmann W, Nimmervoll B, Schlick B, Brockhaus J, Missler M, Shigemoto R, Obermair GJ. 2021. Presynaptic α2δ subunits are key organizers of glutamatergic synapses. PNAS. 118(14).
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2021 | Journal Article | IST-REx-ID: 9316 | OA
Petridou N, Corominas-Murtra B, Heisenberg C-PJ, Hannezo EB. 2021. Rigidity percolation uncovers a structural basis for embryonic tissue phase transitions. Cell. 184(7), 1914–1928.e19.
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2021 | Journal Article | IST-REx-ID: 9205 | OA
Kampjut D, Steiner J, Sazanov LA. 2021. Cryo-EM grid optimization for membrane proteins. iScience. 24(3), 102139.
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2021 | Journal Article | IST-REx-ID: 9287 | OA
Narasimhan M, Gallei MC, Tan S, Johnson AJ, Verstraeten I, Li L, Rodriguez Solovey L, Han H, Himschoot E, Wang R, Vanneste S, Sánchez-Simarro J, Aniento F, Adamowski M, Friml J. Systematic analysis of specific and nonspecific auxin effects on endocytosis and trafficking. Plant Physiology.
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2021 | Journal Article | IST-REx-ID: 9250
Petit YK, Mourad E, Prehal C, Leypold C, Windischbacher A, Mijailovic D, Slugovc C, Borisov SM, Zojer E, Brutti S, Fontaine O, Freunberger SA. 2021. Mechanism of mediated alkali peroxide oxidation and triplet versus singlet oxygen formation. Nature Chemistry.
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2021 | Journal Article | IST-REx-ID: 9290 | OA
Glanc M, Van Gelderen K, Hörmayer L, Tan S, Naramoto S, Zhang X, Domjan D, Vcelarova L, Hauschild R, Johnson AJ, de Koning E, van Dop M, Rademacher E, Janson S, Wei X, Molnar G, Fendrych M, De Rybel B, Offringa R, Friml J. 2021. AGC kinases and MAB4/MEL proteins maintain PIN polarity by limiting lateral diffusion in plant cells. Current Biology.
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2021 | Journal Article | IST-REx-ID: 9329 | OA
Zhang X, Schlögl A, Vandael DH, Jonas PM. 2021. MOD: A novel machine-learning optimal-filtering method for accurate and efficient detection of subthreshold synaptic events in vivo. Journal of Neuroscience Methods. 357(6), 109125.
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2021 | Book Chapter | IST-REx-ID: 9245
Xia P, Heisenberg C-PJ. 2021.Quantifying tissue tension in the granulosa layer after laser surgery. In: Germline Development in the Zebrafish. Methods in Molecular Biology, vol. 2218, 117–128.
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2021 | Preprint | IST-REx-ID: 9238 | OA
Emtenani S, Martin ET, György A, Bicher J, Genger J-W, Hurd TR, Köcher T, Bergthaler A, Rangan P, Siekhaus DE. A genetic program boosts mitochondrial function to power macrophage tissue invasion. bioRxiv, 10.1101/2021.02.18.431643.
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2021 | Journal Article | IST-REx-ID: 8931 | OA
Gelová Z, Gallei MC, Pernisová M, Brunoud G, Zhang X, Glanc M, Li L, Michalko J, Pavlovicova Z, Verstraeten I, Han H, Hajny J, Hauschild R, Čovanová M, Zwiewka M, Hörmayer L, Fendrych M, Xu T, Vernoux T, Friml J. 2021. Developmental roles of auxin binding protein 1 in Arabidopsis thaliana. Plant Science. 303, 110750.
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2021 | Journal Article | IST-REx-ID: 9010 | OA
Ötvös K, Marconi M, Vega A, O’Brien J, Johnson AJ, Abualia R, Antonielli L, Montesinos López JC, Zhang Y, Tan S, Cuesta C, Artner C, Bouguyon E, Gojon A, Friml J, Gutiérrez RA, Wabnik KT, Benková E. 2021. Modulation of plant root growth by nitrogen source-defined regulation of polar auxin transport. EMBO Journal. 40(3), e106862.
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2021 | Journal Article | IST-REx-ID: 9168 | OA
Fraisse C, Sachdeva H. 2021. The rates of introgression and barriers to genetic exchange between hybridizing species: Sex chromosomes vs autosomes. Genetics. 217(2), iyaa025.
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2021 | Journal Article | IST-REx-ID: 8988
Düllberg CF, Auer A, Canigova N, Loibl K, Loose M. 2021. In vitro reconstitution reveals phosphoinositides as cargo-release factors and activators of the ARF6 GAP ADAP1. PNAS. 118(1), e2010054118.
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2021 | Journal Article | IST-REx-ID: 8582 | OA
Li H, von Wangenheim D, Zhang X, Tan S, Darwish-Miranda N, Naramoto S, Wabnik KT, de Rycke R, Kaufmann W, Gütl DJ, Tejos R, Grones P, Ke M, Chen X, Dettmer J, Friml J. 2021. Cellular requirements for PIN polar cargo clustering in Arabidopsis thaliana. New Phytologist. 229(1), 351–369.
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2021 | Research Data | IST-REx-ID: 9389 | OA
Valentini M. 2021. Research data for ‘Non-topological zero bias peaks in full-shell nanowires induced by flux tunable Andreev states’, IST Austria, 10.15479/AT:ISTA:9389.
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2021 | Journal Article | IST-REx-ID: 9376 | OA
Zhang R, Auzinger T, Bickel B. Computational design of planar multistable compliant structures. ACM Transactions on Graphics.
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2021 | Thesis | IST-REx-ID: 9623
Caballero Mancebo S. 2021. Fertilization-induced deformations are controlled by the actin cortex and a mitochondria-rich subcortical layer in ascidian oocytes. IST Austria.
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2020 | Thesis | IST-REx-ID: 8983
Emtenani S. 2020. Metabolic regulation of Drosophila macrophage tissue invasion. IST Austria.
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2020 | Journal Article | IST-REx-ID: 8971 | OA
Fäßler F, Dimchev GA, Hodirnau V-V, Wan W, Schur FK. 2020. Cryo-electron tomography structure of Arp2/3 complex in cells reveals new insights into the branch junction. Nature Communications. 11, 6437.
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2020 | Journal Article | IST-REx-ID: 8957
Godard BG, Dumollard R, Munro E, Chenevert J, Hebras C, Mcdougall A, Heisenberg C-PJ. 2020. Apical relaxation during mitotic rounding promotes tension-oriented cell division. Developmental Cell. 55(6), 695–706.
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2020 | Journal Article | IST-REx-ID: 8978 | OA
Laukoter S, Amberg N, Pauler F, Hippenmeyer S. 2020. Generation and isolation of single cells from mouse brain with mosaic analysis with double markers-induced uniparental chromosome disomy. STAR Protocols. 1(3), 100215.
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2020 | Preprint | IST-REx-ID: 8831 | OA
Aggarwal K, Hofmann AC, Jirovec D, Prieto Gonzalez I, Sammak A, Botifoll M, Marti-Sanchez S, Veldhorst M, Arbiol J, Scappucci G, Katsaros G. Enhancement of proximity induced superconductivity in planar Germanium. arXiv, 2012.00322.
View | Files available | arXiv
 
2020 | Journal Article | IST-REx-ID: 8586 | OA
Fäßler F, Zens B, Hauschild R, Schur FK. 2020. 3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy. Journal of Structural Biology. 212(3), 107633.
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2020 | Journal Article | IST-REx-ID: 8943 | OA
Tan S, Di Donato M, Glanc M, Zhang X, Klíma P, Liu J, Bailly A, Ferro N, Petrášek J, Geisler M, Friml J. 2020. Non-steroidal anti-inflammatory drugs target TWISTED DWARF1-regulated actin dynamics and auxin transport-mediated plant development. Cell Reports. 33(9), 108463.
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2020 | Journal Article | IST-REx-ID: 8562 | OA
Gavriil K, Guseinov R, Perez Rodriguez J, Pellis D, Henderson PM, Rist F, Pottmann H, Bickel B. 2020. Computational design of cold bent glass façades. ACM Transactions on Graphics. 39(6), 208.
View | Files available | DOI | Download Preprint (ext.) | arXiv
 
2020 | Research Data | IST-REx-ID: 8761 | OA
Guseinov R. 2020. Supplementary data for ‘Computational design of cold bent glass façades’, IST Austria, 10.15479/AT:ISTA:8761.
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2020 | Journal Article | IST-REx-ID: 9114 | OA
Hease WJ, Rueda Sanchez AR, Sahu R, Wulf M, Arnold GM, Schwefel HGL, Fink JM. 2020. Bidirectional electro-optic wavelength conversion in the quantum ground state. PRX Quantum. 1(2), 020315.
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2020 | Preprint | IST-REx-ID: 9750
Slovakova J, Sikora MK, Caballero Mancebo S, Krens G, Kaufmann W, Huljev K, Heisenberg C-PJ. 2020. Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion. bioRxiv, 10.1101/2020.11.20.391284.
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2020 | Journal Article | IST-REx-ID: 8581
Pinke G, Zhou L, Sazanov LA. 2020. Cryo-EM structure of the entire mammalian F-type ATP synthase. Nature Structural and Molecular Biology. 27(11), 1077–1085.
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2020 | Journal Article | IST-REx-ID: 8721
Hajny J, Prat T, Rydza N, Rodriguez Solovey L, Tan S, Verstraeten I, Domjan D, Mazur E, Smakowska-Luzan E, Smet W, Mor E, Nolf J, Yang B, Grunewald W, Molnar G, Belkhadir Y, De Rybel B, Friml J. 2020. Receptor kinase module targets PIN-dependent auxin transport during canalization. Science. 370(6516), 550–557.
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2020 | Journal Article | IST-REx-ID: 8737 | OA
Kampjut D, Sazanov LA. 2020. The coupling mechanism of mammalian respiratory complex I. Science. 370(6516), eabc4209.
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2020 | Journal Article | IST-REx-ID: 8755 | OA
Peruzzo M, Trioni A, Hassani F, Zemlicka M, Fink JM. 2020. Surpassing the resistance quantum with a geometric superinductor. Physical Review Applied. 14(4), 044055.
View | Files available | DOI | arXiv
 
2020 | Thesis | IST-REx-ID: 8657
Kavcic B. 2020. Perturbations of protein synthesis: from antibiotics to genetics and physiology. IST Austria.
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2020 | Thesis | IST-REx-ID: 8620
Morandell J. 2020. Illuminating the role of Cul3 in autism spectrum disorder pathogenesis. IST Austria.
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2020 | Thesis | IST-REx-ID: 8589
Han H. 2020. Novel insights into PIN polarity regulation during Arabidopsis development. IST Austria.
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2020 | Journal Article | IST-REx-ID: 8162 | OA
Laukoter S, Pauler F, Beattie RJ, Amberg N, Hansen AH, Streicher C, Penz T, Bock C, Hippenmeyer S. 2020. Cell-type specificity of genomic imprinting in cerebral cortex. Neuron. 107(6), 1160–1179.e9.
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2020 | Journal Article | IST-REx-ID: 8261 | OA
Zhang X, Schlögl A, Jonas PM. 2020. Selective routing of spatial information flow from input to output in hippocampal granule cells. Neuron. 107(6), 1212–1225.
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2020 | Thesis | IST-REx-ID: 8366 | OA
Guseinov R. 2020. Computational design of curved thin shells: From glass façades to programmable matter. IST Austria.
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2020 | Preprint | IST-REx-ID: 8557 | OA
Belyaeva V, Wachner S, Gridchyn I, Linder M, Emtenani S, György A, Sibilia M, Siekhaus DE. Cortical actin properties controlled by Drosophila Fos aid macrophage infiltration against surrounding tissue resistance. bioRxiv, 10.1101/2020.09.18.301481.
View | Files available | DOI | Download Preprint (ext.)
 
2020 | Thesis | IST-REx-ID: 8386 | OA
Zhang R. 2020. Structure-aware computational design and its application to 3D printable volume scattering, mechanism, and multistability. IST Austria.
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2020 | Thesis | IST-REx-ID: 8390 | OA
Royer A. 2020. Leveraging structure in Computer Vision tasks for flexible Deep Learning models. IST Austria.
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2020 | Thesis | IST-REx-ID: 8358 | OA
Dos Santos Caldas PR. 2020. Organization and dynamics of treadmilling filaments in cytoskeletal networks of FtsZ and its crosslinkers. IST Austria.
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2020 | Thesis | IST-REx-ID: 8340
Kampjut D. 2020. Molecular mechanisms of mitochondrial redox-coupled proton pumping enzymes. IST Austria.
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2020 | Thesis | IST-REx-ID: 8350
Shamipour S. 2020. Bulk actin dynamics drive phase segregation in zebrafish oocytes . IST Austria.
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2020 | Thesis | IST-REx-ID: 8353
Steiner J. 2020. Biochemical and structural investigation of the Mrp antiporter, an ancestor of complex I. IST Austria.
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2020 | Thesis | IST-REx-ID: 8341
Bezeljak U. 2020. In vitro reconstitution of a Rab activation switch. IST Austria.
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2020 | Journal Article | IST-REx-ID: 8529 | OA
Arnold GM, Wulf M, Barzanjeh S, Redchenko E, Rueda Sanchez AR, Hease WJ, Hassani F, Fink JM. 2020. Converting microwave and telecom photons with a silicon photonic nanomechanical interface. Nature Communications. 11, 4460.
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2020 | Journal Article | IST-REx-ID: 8142 | OA
Montesinos López JC, Abuzeineh A, Kopf A, Juanes Garcia A, Ötvös K, Petrášek J, Sixt MK, Benková E. 2020. Phytohormone cytokinin guides microtubule dynamics during cell progression from proliferative to differentiated stage. The Embo Journal. 39(17), e104238.
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2020 | Journal Article | IST-REx-ID: 8336 | OA
Kubiasova K, Montesinos López JC, Šamajová O, Nisler J, Mik V, Semeradova H, Plíhalová L, Novák O, Marhavý P, Cavallari N, Zalabák D, Berka K, Doležal K, Galuszka P, Šamaj J, Strnad M, Benková E, Plíhal O, Spíchal L. 2020. Cytokinin fluoroprobe reveals multiple sites of cytokinin perception at plasma membrane and endoplasmic reticulum. Nature Communications. 11, 4285.
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2020 | Journal Article | IST-REx-ID: 8337 | OA
Antoniadi I, Novák O, Gelová Z, Johnson AJ, Plíhal O, Simerský R, Mik V, Vain T, Mateo-Bonmatí E, Karady M, Pernisová M, Plačková L, Opassathian K, Hejátko J, Robert S, Friml J, Doležal K, Ljung K, Turnbull C. 2020. Cell-surface receptors enable perception of extracellular cytokinins. Nature Communications. 11, 4284.
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2020 | Journal Article | IST-REx-ID: 8139
Johnson AJ, Gnyliukh N, Kaufmann W, Narasimhan M, Vert G, Bednarek S, Friml J. 2020. Experimental toolbox for quantitative evaluation of clathrin-mediated endocytosis in the plant model Arabidopsis. Journal of Cell Science. 133(15), jcs248062.
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2020 | Journal Article | IST-REx-ID: 8001 | OA
Vandael DH, Borges Merjane C, Zhang X, Jonas PM. 2020. Short-term plasticity at hippocampal mossy fiber synapses is induced by natural activity patterns and associated with vesicle pool engram formation. Neuron. 107(3), 509–521.
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2020 | Journal Article | IST-REx-ID: 8284 | OA
Steiner J, Sazanov LA. 2020. Structure and mechanism of the Mrp complex, an ancient cation/proton antiporter. eLife. 9, e59407.
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2020 | Research Data | IST-REx-ID: 8097 | OA
Kavcic B. 2020. Analysis scripts and research data for the paper ‘Mechanisms of drug interactions between translation-inhibiting antibiotics’, IST Austria, 10.15479/AT:ISTA:8097.
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2020 | Conference Paper | IST-REx-ID: 8724 | OA
Konstantinov NH, Frantar E, Alistarh D-A, Lampert C. 2020. On the sample complexity of adversarial multi-source PAC learning. Proceedings of the 37th International Conference on Machine Learning. ICML: International Conference on Machine Learning vol. 119, 5416–5425.
View | Files available | arXiv
 
2020 | Journal Article | IST-REx-ID: 8384 | OA
Ishida S, Synak P, Narita F, Hachisuka T, Wojtan CJ. 2020. A model for soap film dynamics with evolving thickness. ACM Transactions on Graphics. 39(4), 31.
View | Files available | DOI | Download Submitted Version (ext.)
 
2020 | Journal Article | IST-REx-ID: 8385 | OA
Sperl G, Narain R, Wojtan CJ. 2020. Homogenized yarn-level cloth. ACM Transactions on Graphics. 39(4), 48.
View | Files available | DOI | Download Submitted Version (ext.)
 
2020 | Journal Article | IST-REx-ID: 8535 | OA
Skrivan T, Soderstrom A, Johansson J, Sprenger C, Museth K, Wojtan CJ. 2020. Wave curves: Simulating Lagrangian water waves on dynamically deforming surfaces. ACM Transactions on Graphics. 39(4), 65.
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2020 | Conference Paper | IST-REx-ID: 8188 | OA
Henderson PM, Lampert C. 2020. Unsupervised object-centric video generation and decomposition in 3D. 34th Conference on Neural Information Processing Systems. NeurIPS: Neural Information Processing Systems vol. 33, 3106–3117.
View | Download Preprint (ext.) | arXiv
 
2020 | Journal Article | IST-REx-ID: 8002 | OA
Hörmayer L, Montesinos López JC, Marhavá P, Benková E, Yoshida S, Friml J. 2020. Wounding-induced changes in cellular pressure and localized auxin signalling spatially coordinate restorative divisions in roots. Proceedings of the National Academy of Sciences. 117(26), 202003346.
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2020 | Thesis | IST-REx-ID: 8032 | OA
Huszár K. 2020. Combinatorial width parameters for 3-dimensional manifolds. IST Austria.
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2020 | Journal Article | IST-REx-ID: 7885
REVERSAT A, Gärtner FR, Merrin J, Stopp JA, Tasciyan S, Aguilera Servin JL, de Vries I, Hauschild R, Hons M, Piel M, Callan-Jones A, Voituriez R, Sixt MK. 2020. Cellular locomotion using environmental topography. Nature. 582, 582–585.
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2020 | Preprint | IST-REx-ID: 8545 | OA
Contreras X, Davaatseren A, Amberg N, Hansen AH, Sonntag J, Andersen L, Bernthaler T, Heger A-M, Johnson R, Schwarz LA, Luo L, Rülicke T, Hippenmeyer S. 2020. A genome-wide library of MADM mice for single-cell genetic mosaic analysis. bioRxiv, 10.1101/2020.06.05.136192.
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2020 | Thesis | IST-REx-ID: 7902 | OA
Contreras X. 2020. Genetic dissection of neural development in health and disease at single cell resolution. IST Austria.
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2020 | Journal Article | IST-REx-ID: 8203 | OA
Katsaros G, Kukucka J, Vukušić L, Watzinger H, Gao F, Wang T, Zhang J-J, Held K. 2020. Zero field splitting of heavy-hole states in quantum dots. Nano Letters. 20(7), 5201–5206.
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2020 | Journal Article | IST-REx-ID: 7875 | OA
Kopf A, Renkawitz J, Hauschild R, Girkontaite I, Tedford K, Merrin J, Thorn-Seshold O, Trauner D, Häcker H, Fischer KD, Kiermaier E, Sixt MK. 2020. Microtubules control cellular shape and coherence in amoeboid migrating cells. The Journal of Cell Biology. 219(6), e201907154.
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2020 | Journal Article | IST-REx-ID: 5681 | OA
Hikaru I, Wojtan CJ, Thuerey N, Igarashi T, Ando R. 2020. Simulating liquids on dynamically warping grids. IEEE Transactions on Visualization and Computer Graphics. 26(6), 2288–2302.
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2020 | Journal Article | IST-REx-ID: 7814 | OA
Beattie RJ, Hippenmeyer S, Pauler F. 2020. SCOPES: Sparking curiosity through Open-Source platforms in education and science. Frontiers in Education. 5, 48.
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2020 | Journal Article | IST-REx-ID: 7815 | OA
Beattie RJ, Streicher C, Amberg N, Cheung GT, Contreras X, Hansen AH, Hippenmeyer S. 2020. Lineage tracing and clonal analysis in developing cerebral cortex using mosaic analysis with double markers (MADM). Journal of Visual Experiments (JoVE). (159), e61147.
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2020 | Journal Article | IST-REx-ID: 8765 | OA
Schreck C, Wojtan CJ. 2020. A practical method for animating anisotropic elastoplastic materials. Computer Graphics Forum. 39(2), 89–99.
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2020 | Journal Article | IST-REx-ID: 7600 | OA
Tan S, Zhang X, Kong W, Yang X-L, Molnar G, Vondráková Z, Filepová R, Petrášek J, Friml J, Xue H-W. 2020. The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin efflux in Arabidopsis. Nature Plants. 6, 556–569.
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2020 | Journal Article | IST-REx-ID: 7619 | OA
Zhang X, Adamowski M, Marhavá P, Tan S, Zhang Y, Rodriguez Solovey L, Zwiewka M, Pukyšová V, Sánchez AS, Raxwal VK, Hardtke CS, Nodzynski T, Friml J. 2020. Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin transporters. The Plant Cell. 32(5), 1644–1664.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2020 | Journal Article | IST-REx-ID: 7805 | OA
Hurny A, Cuesta C, Cavallari N, Ötvös K, Duclercq J, Dokládal L, Montesinos López JC, Gallemi M, Semeradova H, Rauter T, Stenzel I, Persiau G, Benade F, Bhalearo R, Sýkorová E, Gorzsás A, Sechet J, Mouille G, Heilmann I, De Jaeger G, Ludwig-Müller J, Benková E. 2020. Synergistic on Auxin and Cytokinin 1 positively regulates growth and attenuates soil pathogen resistance. Nature Communications. 11, 2170.
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2020 | Journal Article | IST-REx-ID: 7541 | OA
Gao F, Wang J-H, Watzinger H, Hu H, Rančić MJ, Zhang J-Y, Wang T, Yao Y, Wang G-L, Kukucka J, Vukušić L, Kloeffel C, Loss D, Liu F, Katsaros G, Zhang J-J. 2020. Site-controlled uniform Ge/Si hut wires with electrically tunable spin-orbit coupling. Advanced Materials. 32(16), 1906523.
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2020 | Journal Article | IST-REx-ID: 7580 | OA
Bezeljak U, Loya H, Kaczmarek BM, Saunders TE, Loose M. 2020. Stochastic activation and bistability in a Rab GTPase regulatory network. Proceedings of the National Academy of Sciences. 117(12), 6504–6549.
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2020 | Journal Article | IST-REx-ID: 7343 | OA
Milutinovic B, Stock M, Grasse AV, Naderlinger E, Hilbe C, Cremer S. 2020. Social immunity modulates competition between coinfecting pathogens. Ecology Letters. 23(3), 565–574.
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2020 | Thesis | IST-REx-ID: 7525 | OA
Bhandari P. 2020. Localization and functional role of Cav2.3 in the medial habenula to interpeduncular nucleus pathway. IST Austria.
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2020 | Journal Article | IST-REx-ID: 7427 | OA
Tan S, Abas MF, Verstraeten I, Glanc M, Molnar G, Hajny J, Lasák P, Petřík I, Russinova E, Petrášek J, Novák O, Pospíšil J, Friml J. 2020. Salicylic acid targets protein phosphatase 2A to attenuate growth in plants. Current Biology. 30(3), 381–395.e8.
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2020 | Journal Article | IST-REx-ID: 7464 | OA
Dick RA, Xu C, Morado DR, Kravchuk V, Ricana CL, Lyddon TD, Broad AM, Feathers JR, Johnson MC, Vogt VM, Perilla JR, Briggs JAG, Schur FK. 2020. Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly. PLOS Pathogens. 16(1), e1008277.
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2020 | Research Data Reference | IST-REx-ID: 9723 | OA
Dick RA, Xu C, Morado DR, Kravchuk V, Ricana CL, Lyddon TD, Broad AM, Feathers JR, Johnson MC, Vogt VM, Perilla JR, Briggs JAG, Schur FK. 2020. Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly, Public Library of Science , 10.1371/journal.ppat.1008277.
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2020 | Journal Article | IST-REx-ID: 7490 | OA
Narasimhan M, Johnson AJ, Prizak R, Kaufmann W, Tan S, Casillas Perez BE, Friml J. 2020. Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants. eLife. 9, e52067.
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2020 | Preprint | IST-REx-ID: 7800 | OA
Morandell J, Schwarz LA, Basilico B, Tasciyan S, Nicolas A, Sommer CM, Kreuzinger C, Knaus L, Dobler Z, Cacci E, Danzl JG, Novarino G. Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. bioRxiv, 10.1101/2020.01.10.902064 .
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2020 | Journal Article | IST-REx-ID: 7253 | OA
Laukoter S, Beattie RJ, Pauler F, Amberg N, Nakayama KI, Hippenmeyer S. 2020. Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex development. Nature Communications. 11, 195.
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2020 | Journal Article | IST-REx-ID: 7252
Borges Merjane C, Kim O, Jonas PM. 2020. Functional Electron Microscopy (“Flash and Freeze”) of Identified Cortical Synapses in Acute Brain Slices. Neuron.
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2019 | Journal Article | IST-REx-ID: 7197 | OA
Dos Santos Caldas PR, Lopez Pelegrin MD, Pearce DJG, Budanur NB, Brugués J, Loose M. 2019. Cooperative ordering of treadmilling filaments in cytoskeletal networks of FtsZ and its crosslinker ZapA. Nature Communications. 10, 5744.
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2019 | Thesis | IST-REx-ID: 7186 | OA
Schwayer C. 2019. Mechanosensation of tight junctions depends on ZO-1 phase separation and flow. IST Austria.
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2019 | Thesis | IST-REx-ID: 7172 | OA
Vasileva MK. 2019. Molecular mechanisms of endomembrane trafficking in Arabidopsis thaliana. IST Austria.
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2019 | Journal Article | IST-REx-ID: 7026 | OA
Lukacisin M, Bollenbach MT. 2019. Emergent gene expression responses to drug combinations predict higher-order drug interactions. Cell Systems. 9(5), 423-433.e1-e3.
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2019 | Journal Article | IST-REx-ID: 6486 | OA
Kühnen J, Scarselli D, Hof B. 2019. Relaminarization of pipe flow by means of 3D-printed shaped honeycombs. Journal of Fluids Engineering. 141(11), 111105.
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2019 | Journal Article | IST-REx-ID: 7001 | OA
Schwayer C, Shamipour S, Pranjic-Ferscha K, Schauer A, Balda M, Tada M, Matter K, Heisenberg C-PJ. 2019. Mechanosensation of tight junctions depends on ZO-1 phase separation and flow. Cell. 179(4), 937–952.e18.
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2019 | Thesis | IST-REx-ID: 6947 | OA
Assen FP. 2019. Lymph node mechanics: Deciphering the interplay between stroma contractility, morphology and lymphocyte trafficking. IST Austria.
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2019 | Journal Article | IST-REx-ID: 6978 | OA
Budanur NB, Dogra A, Hof B. 2019. Geometry of transient chaos in streamwise-localized pipe flow turbulence. Physical Review Fluids. 4(10), 102401.
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2019 | Journal Article | IST-REx-ID: 6848 | OA
Kampjut D, Sazanov LA. 2019. Structure and mechanism of mitochondrial proton-translocating transhydrogenase. Nature. 573(7773), 291–295.
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2019 | Journal Article | IST-REx-ID: 6897 | OA
Zhu Q, Gallemi M, Pospíšil J, Žádníková P, Strnad M, Benková E. 2019. Root gravity response module guides differential growth determining both root bending and apical hook formation in Arabidopsis. Development. 146(17), dev175919.
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2019 | Thesis | IST-REx-ID: 6849 | OA
Rangel Guerrero DK. 2019. The role of CCK-interneurons in regulating hippocampal network dynamics. IST Austria.
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2019 | Journal Article | IST-REx-ID: 6859
Zhou L, Sazanov LA. 2019. Structure and conformational plasticity of the intact Thermus thermophilus V/A-type ATPase. Science. 365(6455), eaaw9144.
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2019 | Journal Article | IST-REx-ID: 6442 | OA
Schreck C, Hafner C, Wojtan CJ. 2019. Fundamental solutions for water wave animation. ACM Transactions on Graphics. 38(4), 130.
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2019 | Journal Article | IST-REx-ID: 6755 | OA
Picard MAL, Vicoso B, Roquis D, Bulla I, Augusto RC, Arancibia N, Grunau C, Boissier J, Cosseau C. 2019. Dosage compensation throughout the Schistosoma mansoni lifecycle: Specific chromatin landscape of the Z chromosome. Genome biology and evolution. 11(7), 1909–1922.
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2019 | Journal Article | IST-REx-ID: 6609 | OA
Barzanjeh S, Redchenko E, Peruzzo M, Wulf M, Lewis D, Arnold GM, Fink JM. 2019. Stationary entangled radiation from micromechanical motion. Nature. 570, 480–483.
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2019 | Journal Article | IST-REx-ID: 6611 | OA
Glanc M, Fendrych M, Friml J. 2019. PIN2 polarity establishment in arabidopsis in the absence of an intact cytoskeleton. Biomolecules. 9(6), 222.
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2019 | Thesis | IST-REx-ID: 6546 | OA
Valosková K. 2019. The role of a highly conserved major facilitator superfamily member in Drosophila embryonic macrophage migration. IST Austria.
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2019 | Journal Article | IST-REx-ID: 6508 | OA
Shamipour S, Kardos R, Xue S, Hof B, Hannezo EB, Heisenberg C-PJ. 2019. Bulk actin dynamics drive phase segregation in zebrafish oocytes. Cell. 177(6), 1463–1479.e18.
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2019 | Thesis | IST-REx-ID: 6392 | OA
Lukacisin M. 2019. Quantitative investigation of gene expression principles through combinatorial drug perturbation and theory. IST Austria.
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2019 | Thesis | IST-REx-ID: 6435 | OA
Casillas Perez BE. 2019. Collective defenses of garden ants against a fungal pathogen. IST Austria.
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2019 | Journal Article | IST-REx-ID: 6351 | OA
Marhavá P, Hörmayer L, Yoshida S, Marhavý P, Benková E, Friml J. 2019. Re-activation of stem cell pathways for pattern restoration in plant wound healing. Cell. 177(4), 957–969.e13.
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2019 | Journal Article | IST-REx-ID: 6603 | OA
Marhavá P, Hörmayer L, Yoshida S, Marhavý P, Benková E, Friml J. 2019. Re-activation of stem cell pathways for pattern restoration in plant wound healing. Cell. 177(4), 957–969.e13.
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2019 | Journal Article | IST-REx-ID: 6328 | OA
Renkawitz J, Kopf A, Stopp JA, de Vries I, Driscoll MK, Merrin J, Hauschild R, Welf ES, Danuser G, Fiolka R, Sixt MK. 2019. Nuclear positioning facilitates amoeboid migration along the path of least resistance. Nature. 568, 546–550.
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2019 | Journal Article | IST-REx-ID: 6418 | OA
Huylmans AK, Toups MA, Macon A, Gammerdinger WJ, Vicoso B. 2019. Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome. Genome biology and evolution. 11(4), 1033–1044.
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2019 | Journal Article | IST-REx-ID: 6187 | OA
Valosková K, Biebl J, Roblek M, Emtenani S, György A, Misova M, Ratheesh A, Rodrigues P, Shkarina K, Larsen ISB, Vakhrushev SY, Clausen H, Siekhaus DE. 2019. A conserved major facilitator superfamily member orchestrates a subset of O-glycosylation to aid macrophage tissue invasion. eLife. 8, e41801.
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2019 | Journal Article | IST-REx-ID: 6087 | OA
Xia P, Gütl DJ, Zheden V, Heisenberg C-PJ. 2019. Lateral inhibition in cell specification mediated by mechanical signals modulating TAZ activity. Cell. 176(6), 1379–1392.e14.
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2019 | Journal Article | IST-REx-ID: 6046 | OA
Mitosch K, Rieckh G, Bollenbach MT. 2019. Temporal order and precision of complex stress responses in individual bacteria. Molecular systems biology. 15(2), e8470.
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2019 | Journal Article | IST-REx-ID: 6025 | OA
Capek D, Smutny M, Tichy AM, Morri M, Janovjak HL, Heisenberg C-PJ. 2019. Light-activated Frizzled7 reveals a permissive role of non-canonical wnt signaling in mesendoderm cell migration. eLife. 8, e42093.
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2019 | Thesis | IST-REx-ID: 6269 | OA
Narasimhan M. 2019. Clathrin-Mediated endocytosis, post-endocytic trafficking and their regulatory controls in plants . IST Austria.
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2019 | Journal Article | IST-REx-ID: 5789 | OA
Petridou N, Grigolon S, Salbreux G, Hannezo EB, Heisenberg C-PJ. 2019. Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical Wnt signalling. Nature Cell Biology. 21, 169–178.
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2019 | Journal Article | IST-REx-ID: 7406
Mckenzie C, Spanova M, Johnson AJ, Kainrath S, Zheden V, Sitte HH, Janovjak HL. 2019. Isolation of synaptic vesicles from genetically engineered cultured neurons. Journal of Neuroscience Methods. 312, 114–121.
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2018 | Thesis | IST-REx-ID: 6263 | OA
Lukacisinova M. 2018. Genetic determinants of antibiotic resistance evolution. IST Austria.
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2018 | Journal Article | IST-REx-ID: 3 | OA
Deliu E, Arecco N, Morandell J, Dotter C, Contreras X, Girardot C, Käsper E, Kozlova A, Kishi K, Chiaradia I, Noh K, Novarino G. 2018. Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition. Nature Neuroscience. 21(12), 1717–1727.
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2018 | Journal Article | IST-REx-ID: 23 | OA
Vukušić L, Kukucka J, Watzinger H, Milem JM, Schäffler F, Katsaros G. 2018. Single-shot readout of hole spins in Ge. Nano Letters. 18(11), 7141–7145.
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2018 | Journal Article | IST-REx-ID: 44 | OA
Turner CJ, Michailidis A, Abanin DA, Serbyn M, Papić Z. 2018. Quantum scarred eigenstates in a Rydberg atom chain: Entanglement, breakdown of thermalization, and stability to perturbations. Physical Review B. 98(15), 155134.
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2018 | Journal Article | IST-REx-ID: 77 | OA
Watzinger H, Kukucka J, Vukušić L, Gao F, Wang T, Schäffler F, Zhang J, Katsaros G. 2018. A germanium hole spin qubit. Nature Communications. 9(3902).
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2018 | Journal Article | IST-REx-ID: 134 | OA
Jeschke S, Skrivan T, Mueller Fischer M, Chentanez N, Macklin M, Wojtan CJ. 2018. Water surface wavelets. ACM Transactions on Graphics. 37(4), 94.
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2018 | Journal Article | IST-REx-ID: 15 | OA
Hons M, Kopf A, Hauschild R, Leithner AF, Gärtner FR, Abe J, Renkawitz J, Stein J, Sixt MK. 2018. Chemokines and integrins independently tune actin flow and substrate friction during intranodal migration of T cells. Nature Immunology. 19(6), 606–616.
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2018 | Journal Article | IST-REx-ID: 308 | OA
Ratheesh A, Biebl J, Smutny M, Veselá J, Papusheva E, Krens G, Kaufmann W, György A, Casano AM, Siekhaus DE. 2018. Drosophila TNF modulates tissue tension in the embryo to facilitate macrophage invasive migration. Developmental Cell. 45(3), 331–346.
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2018 | Thesis | IST-REx-ID: 323 | OA
Leithner AF. 2018. Branched actin networks in dendritic cell biology. IST Austria.
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2018 | Journal Article | IST-REx-ID: 402 | OA
Brown M, Assen FP, Leithner AF, Abe J, Schachner H, Asfour G, Bagó Horváth Z, Stein J, Uhrin P, Sixt MK, Kerjaschki D. 2018. Lymph node blood vessels provide exit routes for metastatic tumor cell dissemination in mice. Science. 359(6382), 1408–1411.
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2018 | Journal Article | IST-REx-ID: 328 | OA
Choueiri GH, Lopez Alonso JM, Hof B. 2018. Exceeding the asymptotic limit of polymer drag reduction. Physical Review Letters. 120(12), 124501.
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2018 | Journal Article | IST-REx-ID: 326 | OA
Sawada K, Kawakami R, Shigemoto R, Nemoto T. 2018. Super resolution structural analysis of dendritic spines using three-dimensional structured illumination microscopy in cleared mouse brain slices. European Journal of Neuroscience. 47(9), 1033–1042.
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2018 | Thesis | IST-REx-ID: 395 | OA
Tarlungeanu D-C. 2018. The branched chain amino acids in autism spectrum disorders . IST Austria.
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2018 | Journal Article | IST-REx-ID: 544 | OA
György A, Roblek M, Ratheesh A, Valosková K, Belyaeva V, Wachner S, Matsubayashi Y, Sanchez Sanchez B, Stramer B, Siekhaus DE. 2018. Tools allowing independent visualization and genetic manipulation of Drosophila melanogaster macrophages and surrounding tissues. G3: Genes, Genomes, Genetics. 8(3), 845–857.
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2018 | Journal Article | IST-REx-ID: 503
Tomasek K, Bergmiller T, Guet CC. 2018. Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains. Journal of Biotechnology. 268, 40–52.
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2018 | Journal Article | IST-REx-ID: 437 | OA
Leithner AF, Renkawitz J, de Vries I, Hauschild R, Haecker H, Sixt MK. 2018. Fast and efficient genetic engineering of hematopoietic precursor cells for the study of dendritic cell migration. European Journal of Immunology. 48(6), 1074–1077.
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2017 | Book Chapter | IST-REx-ID: 1213
Baranova NS, Loose M. 2017.Single-molecule measurements to study polymerization dynamics of FtsZ-FtsA copolymers. In: Cytokinesis. Methods in Cell Biology, vol. 137, 355–370.
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2017 | Journal Article | IST-REx-ID: 749 | OA
Chen C, Satterfield R, Young S, Jonas PM. 2017. Triple function of Synaptotagmin 7 ensures efficiency of high-frequency transmission at central GABAergic synapses. Cell Reports. 21(8), 2082–2089.
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2017 | Journal Article | IST-REx-ID: 804 | OA
Schmalhorst PS, Deluweit F, Scherrers R, Heisenberg C-PJ, Sikora MK. 2017. Overcoming the limitations of the MARTINI force field in simulations of polysaccharides. Journal of Chemical Theory and Computation. 13(10), 5039–5053.
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2017 | Journal Article | IST-REx-ID: 727
Mueller J, Szep G, Nemethova M, de Vries I, Lieber A, Winkler C, Kruse K, Small J, Schmeiser C, Keren K, Hauschild R, Sixt MK. 2017. Load adaptation of lamellipodial actin networks. Cell. 171(1), 188–200.
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2017 | Journal Article | IST-REx-ID: 803 | OA
Samwer M, Schneider M, Hoefler R, Schmalhorst PS, Jude J, Zuber J, Gerlic D. 2017. DNA cross-bridging shapes a single nucleus from a set of mitotic chromosomes. Cell. 170(5), 956–972.
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2017 | Journal Article | IST-REx-ID: 840 | OA
Vukušić L, Kukucka J, Watzinger H, Katsaros G. 2017. Fast hole tunneling times in germanium hut wires probed by single-shot reflectometry. Nano Letters. 17(9), 5706–5710.
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2017 | Journal Article | IST-REx-ID: 470 | OA
Jeschke S, Wojtan CJ. 2017. Water wave packets. ACM Transactions on Graphics. 36(4), 103.
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2017 | Journal Article | IST-REx-ID: 946 | OA
von Wangenheim D, Hauschild R, Fendrych M, Barone V, Benková E, Friml J. 2017. Live tracking of moving samples in confocal microscopy for vertically grown roots. eLife. 6, e26792.
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2017 | Journal Article | IST-REx-ID: 944
Beattie RJ, Postiglione MP, Burnett L, Laukoter S, Streicher C, Pauler F, Xiao G, Klezovitch O, Vasioukhin V, Ghashghaei T, Hippenmeyer S. 2017. Mosaic analysis with double markers reveals distinct sequential functions of Lgl1 in neural stem cells. Neuron. 94(3), 517–533.e3.
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2017 | Journal Article | IST-REx-ID: 661 | OA
Smutny M, Ákos Z, Grigolon S, Shamipour S, Ruprecht V, Capek D, Behrndt M, Papusheva E, Tada M, Hof B, Vicsek T, Salbreux G, Heisenberg C-PJ. 2017. Friction forces position the neural anlage. Nature Cell Biology. 19, 306–317.
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2017 | Journal Article | IST-REx-ID: 1067 | OA
Morita H, Grigolon S, Bock M, Krens G, Salbreux G, Heisenberg C-PJ. 2017. The physical basis of coordinated tissue spreading in zebrafish gastrulation. Developmental Cell. 40(4), 354–366.
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2017 | Journal Article | IST-REx-ID: 1087 | OA
Song B, Barkley D, Hof B, Avila M. 2017. Speed and structure of turbulent fronts in pipe flow. Journal of Fluid Mechanics. 813, 1045–1059.
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2017 | Journal Article | IST-REx-ID: 1078 | OA
von Wangenheim D, Hauschild R, Friml J. 2017. Light sheet fluorescence microscopy of plant roots growing on the surface of a gel. Journal of visualized experiments JoVE. 2017(119), e55044.
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2017 | Journal Article | IST-REx-ID: 1118 | OA
Gan J, Weng S-M, Pernia-Andrade A, Csicsvari JL, Jonas PM. 2017. Phase-locked inhibition, but not excitation, underlies hippocampal ripple oscillations in awake mice in vivo. Neuron. 93(2), 308–314.
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2017 | Journal Article | IST-REx-ID: 1117 | OA
Chen C, Arai itaru, Satterield R, Young S, Jonas PM. 2017. Synaptotagmin 2 is the fast Ca2+ sensor at a central inhibitory synapse. Cell Reports. 18(3), 723–736.
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2016 | Journal Article | IST-REx-ID: 1323 | OA
Vyleta N, Borges Merjane C, Jonas PM. 2016. Plasticity-dependent, full detonation at hippocampal mossy fiber–CA3 pyramidal neuron synapses. eLife. 5, e17977.
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2016 | Journal Article | IST-REx-ID: 1321 | OA
Leithner AF, Eichner A, Müller J, REVERSAT A, Brown M, Schwarz J, Merrin J, De Gorter D, Schur FK, Bayerl J, de Vries I, Wieser S, Hauschild R, Lai F, Moser M, Kerjaschki D, Rottner K, Small V, Stradal T, Sixt MK. 2016. Diversified actin protrusions promote environmental exploration but are dispensable for locomotion of leukocytes. Nature Cell Biology. 18, 1253–1259.
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2016 | Journal Article | IST-REx-ID: 1350 | OA
Guzmán J, Schlögl A, Frotscher M, Jonas PM. 2016. Synaptic mechanisms of pattern completion in the hippocampal CA3 network. Science. 353(6304), 1117–1123.
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2016 | Journal Article | IST-REx-ID: 1271 | OA
Diz Muñoz A, Romanczuk P, Yu W, Bergert M, Ivanovitch K, Salbreux G, Heisenberg C-PJ, Paluch E. 2016. Steering cell migration by alternating blebs and actin-rich protrusions. BMC Biology. 14(1), 74.
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2016 | Book Chapter | IST-REx-ID: 1094
Harada H, Shigemoto R. 2016.Immunogold protein localization on grid-glued freeze-fracture replicas. In: High-Resolution Imaging of Cellular Proteins. Methods in Molecular Biology, vol. 1474, 203–216.
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2016 | Journal Article | IST-REx-ID: 1100 | OA
Sako K, Pradhan S, Barone V, Inglés Prieto Á, Mueller P, Ruprecht V, Capek D, Galande S, Janovjak HL, Heisenberg C-PJ. 2016. Optogenetic control of nodal signaling reveals a temporal pattern of nodal signaling regulating cell fate specification during gastrulation. Cell Reports. 16(3), 866–877.
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2016 | Conference Paper | IST-REx-ID: 1363 | OA
Bojsen-Hansen M, Wojtan CJ. 2016. Generalized non-reflecting boundaries for fluid re-simulation. ACM SIGGRAPH, ACM Transactions on Graphics, vol. 35, 96.
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2016 | Thesis | IST-REx-ID: 1129 | OA
Schwarz J. 2016. Quantitative analysis of haptotactic cell migration. IST Austria.
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2016 | Journal Article | IST-REx-ID: 1492 | OA
Marhavý P, Montesinos López JC, Abuzeineh A, Van Damme D, Vermeer J, Duclercq J, Rakusova H, Marhavá P, Friml J, Geldner N, Benková E. 2016. Targeted cell elimination reveals an auxin-guided biphasic mode of lateral root initiation. Genes and Development. 30(4), 471–483.
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2016 | Journal Article | IST-REx-ID: 1599 | OA
Kiermaier E, Moussion C, Veldkamp C, Gerardy  Schahn R, de Vries I, Williams L, Chaffee G, Phillips A, Freiberger F, Imre R, Taleski D, Payne R, Braun A, Förster R, Mechtler K, Mühlenhoff M, Volkman B, Sixt MK. 2016. Polysialylation controls dendritic cell trafficking by regulating chemokine recognition. Science. 351(6269), 186–190.
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2016 | Journal Article | IST-REx-ID: 1597
Schwarz J, Sixt MK. 2016. Quantitative analysis of dendritic cell haptotaxis. Methods in Enzymology. 570, 567–581.
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2015 | Journal Article | IST-REx-ID: 1537 | OA
Ruprecht V, Wieser S, Callan Jones A, Smutny M, Morita H, Sako K, Barone V, Ritsch Marte M, Sixt MK, Voituriez R, Heisenberg C-PJ. 2015. Cortical contractility triggers a stochastic switch to fast amoeboid cell motility. Cell. 160(4), 673–685.
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2015 | Journal Article | IST-REx-ID: 1993 | OA
Konrad M, Grasse AV, Tragust S, Cremer S. 2015. Anti-pathogen protection versus survival costs mediated by an ectosymbiont in an ant host. Proceedings of the Royal Society of London Series B Biological Sciences. 282(1799).
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2015 | Journal Article | IST-REx-ID: 1640 | OA
Šimášková M, O’Brien J, Khan-Djamei M, Van Noorden G, Ötvös K, Vieten A, De Clercq I, Van Haperen J, Cuesta C, Hoyerová K, Vanneste S, Marhavý P, Wabnik KT, Van Breusegem F, Nowack M, Murphy A, Friml J, Weijers D, Beeckman T, Benková E. 2015. Cytokinin response factors regulate PIN-FORMED auxin transporters. Nature Communications. 6, 8717.
View | Files available | DOI
 
2014 | Thesis | IST-REx-ID: 1403
Behrndt M. 2014. Forces driving epithelial spreading in zebrafish epiboly. IST Austria.
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2013 | Journal Article | IST-REx-ID: 2282 | OA
Campinho P, Behrndt M, Ranft J, Risler T, Minc N, Heisenberg C-PJ. 2013. Tension-oriented cell divisions limit anisotropic tissue tension in epithelial spreading during zebrafish epiboly. Nature Cell Biology. 15, 1405–1414.
View | Files available | DOI | Download Submitted Version (ext.)
 
2013 | Thesis | IST-REx-ID: 1406
Campinho P. 2013. Mechanics of zebrafish epiboly: Tension-oriented cell divisions limit anisotropic tissue tension in epithelial spreading. IST Austria.
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2013 | Journal Article | IST-REx-ID: 2944
Aeschbacher S, Futschik A, Beaumont M. 2013. Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates. . Molecular Ecology. 22(4), 987–1002.
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2012 | Journal Article | IST-REx-ID: 2962 | OA
Aeschbacher S, Beaumont M, Futschik A. 2012. A novel approach for choosing summary statistics in approximate Bayesian computation. Genetics. 192(3), 1027–1047.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2012 | Journal Article | IST-REx-ID: 2950
Behrndt M, Salbreux G, Campinho P, Hauschild R, Oswald F, Roensch J, Grill S, Heisenberg C-PJ. 2012. Forces driving epithelial spreading in zebrafish gastrulation. Science. 338(6104), 257–260.
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2012 | Journal Article | IST-REx-ID: 2951
Maître J-L, Berthoumieux H, Krens G, Salbreux G, Julicher F, Paluch E, Heisenberg C-PJ. 2012. Adhesion functions in cell sorting by mechanically coupling the cortices of adhering cells. Science. 338(6104), 253–256.
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2011 | Journal Article | IST-REx-ID: 3396 | OA
Stockinger P, Heisenberg C-PJ, Maître J-L. 2011. Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube. Development. 138(21), 4673–4683.
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2010 | Journal Article | IST-REx-ID: 4157 | OA
Papusheva E, Heisenberg C-PJ. 2010. Spatial organization of adhesion: force-dependent regulation and function in tissue morphogenesis. EMBO Journal. 29(16), 2753–2768.
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