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182 Publications

2021 | Thesis | IST-REx-ID: 9728
N. Agrawal, “Transition to turbulence and drag reduction in particle-laden pipe flows,” IST Austria, 2021.
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2021 | Journal Article | IST-REx-ID: 9642 | OA
A. Venturino et al., “Microglia enable mature perineuronal nets disassembly upon anesthetic ketamine exposure or 60-Hz light entrainment in the healthy brain,” Cell Reports, vol. 36, no. 1. Elsevier, 2021.
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2021 | Journal Article | IST-REx-ID: 8910 | OA
M. Valentini et al., “Nontopological zero-bias peaks in full-shell nanowires induced by flux-tunable Andreev states,” Science, vol. 373, no. 6550. American Association for the Advancement of Science, 2021.
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2021 | Journal Article | IST-REx-ID: 9603 | OA
X. Contreras et al., “A genome-wide library of MADM mice for single-cell genetic mosaic analysis,” Cell Reports, vol. 35, no. 12. Cell Press, 2021.
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2021 | Journal Article | IST-REx-ID: 9558 | OA
G. Yalniz, B. Hof, and N. B. Budanur, “Coarse graining the state space of a turbulent flow using periodic orbits,” Physical Review Letters, vol. 126, no. 24. American Physical Society, 2021.
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2021 | Journal Article | IST-REx-ID: 9540 | OA
M. Prattes et al., “Structural basis for inhibition of the AAA-ATPase Drg1 by diazaborine,” Nature Communications, vol. 12, no. 1. Springer Nature, 2021.
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2021 | Journal Article | IST-REx-ID: 9449 | OA
D. Jirovec et al., “A singlet-triplet hole spin qubit in planar Ge,” Nature Materials. Springer Nature, 2021.
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2021 | Journal Article | IST-REx-ID: 8909 | OA
D. Jirovec et al., “A singlet triplet hole spin qubit in planar Ge,” Nature Materials. Springer Nature, 2021.
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2021 | Journal Article | IST-REx-ID: 9438
D. H. Vandael, Y. Okamoto, C. Borges Merjane, V. M. Vargas Barroso, B. Suter, and P. M. Jonas, “Subcellular patch-clamp techniques for single-bouton stimulation and simultaneous pre- and postsynaptic recording at cortical synapses,” Nature Protocols, vol. 16, no. 6. Springer Nature, pp. 2947–2967, 2021.
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2021 | Thesis | IST-REx-ID: 9562
D. Kleindienst, “2B or not 2B: Hippocampal asymmetries mediated by NMDA receptor subunit GluN2B C-terminus and high-throughput image analysis by Deep-Learning,” IST Austria, 2021.
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2021 | Thesis | IST-REx-ID: 9418 | OA
M. Phuong, “Underspecification in Deep Learning,” IST Austria, 2021.
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2021 | Journal Article | IST-REx-ID: 9431 | OA
M. Obr et al., “Structure of the mature Rous sarcoma virus lattice reveals a role for IP6 in the formation of the capsid hexamer,” Nature Communications, vol. 12, no. 1. Nature Research, 2021.
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2021 | Journal Article | IST-REx-ID: 9429 | OA
J. Morandell et al., “Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development,” Nature Communications, vol. 12, no. 1. Springer Nature, 2021.
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2021 | Journal Article | IST-REx-ID: 9330 | OA
C. L. Schöpf et al., “Presynaptic α2δ subunits are key organizers of glutamatergic synapses,” PNAS, vol. 118, no. 14. National Academy of Sciences, 2021.
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2021 | Journal Article | IST-REx-ID: 9316 | OA
N. Petridou, B. Corominas-Murtra, C.-P. J. Heisenberg, and E. B. Hannezo, “Rigidity percolation uncovers a structural basis for embryonic tissue phase transitions,” Cell, vol. 184, no. 7. Elsevier, p. 1914–1928.e19, 2021.
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2021 | Journal Article | IST-REx-ID: 9205 | OA
D. Kampjut, J. Steiner, and L. A. Sazanov, “Cryo-EM grid optimization for membrane proteins,” iScience, vol. 24, no. 3. Elsevier, 2021.
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2021 | Journal Article | IST-REx-ID: 9287 | OA
M. Narasimhan et al., “Systematic analysis of specific and nonspecific auxin effects on endocytosis and trafficking,” Plant Physiology. Oxford University Press.
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2021 | Journal Article | IST-REx-ID: 9250
Y. K. Petit et al., “Mechanism of mediated alkali peroxide oxidation and triplet versus singlet oxygen formation,” Nature Chemistry. Springer Nature, 2021.
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2021 | Journal Article | IST-REx-ID: 9290 | OA
M. Glanc et al., “AGC kinases and MAB4/MEL proteins maintain PIN polarity by limiting lateral diffusion in plant cells,” Current Biology. Elsevier, 2021.
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2021 | Journal Article | IST-REx-ID: 9329 | OA
X. Zhang, A. Schlögl, D. H. Vandael, and P. M. Jonas, “MOD: A novel machine-learning optimal-filtering method for accurate and efficient detection of subthreshold synaptic events in vivo,” Journal of Neuroscience Methods, vol. 357, no. 6. 2021.
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2021 | Book Chapter | IST-REx-ID: 9245
P. Xia and C.-P. J. Heisenberg, “Quantifying tissue tension in the granulosa layer after laser surgery,” in Germline Development in the Zebrafish, vol. 2218, R. Dosch, Ed. Springer Nature, 2021, pp. 117–128.
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2021 | Preprint | IST-REx-ID: 9238 | OA
S. Emtenani et al., “A genetic program boosts mitochondrial function to power macrophage tissue invasion,” bioRxiv. .
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2021 | Journal Article | IST-REx-ID: 8931 | OA
Z. Gelová et al., “Developmental roles of auxin binding protein 1 in Arabidopsis thaliana,” Plant Science, vol. 303. Elsevier, 2021.
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2021 | Journal Article | IST-REx-ID: 9010 | OA
K. Ötvös et al., “Modulation of plant root growth by nitrogen source-defined regulation of polar auxin transport,” EMBO Journal, vol. 40, no. 3. Embo Press, 2021.
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2021 | Journal Article | IST-REx-ID: 9168 | OA
C. Fraisse and H. Sachdeva, “The rates of introgression and barriers to genetic exchange between hybridizing species: Sex chromosomes vs autosomes,” Genetics, vol. 217, no. 2. Oxford University Press, 2021.
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2021 | Journal Article | IST-REx-ID: 8988
C. F. Düllberg, A. Auer, N. Canigova, K. Loibl, and M. Loose, “In vitro reconstitution reveals phosphoinositides as cargo-release factors and activators of the ARF6 GAP ADAP1,” PNAS, vol. 118, no. 1. National Academy of Sciences, 2021.
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2021 | Journal Article | IST-REx-ID: 8582 | OA
H. Li et al., “Cellular requirements for PIN polar cargo clustering in Arabidopsis thaliana,” New Phytologist, vol. 229, no. 1. Wiley, pp. 351–369, 2021.
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2021 | Research Data | IST-REx-ID: 9389 | OA
M. Valentini, “Research data for ‘Non-topological zero bias peaks in full-shell nanowires induced by flux tunable Andreev states.’” IST Austria, 2021.
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2021 | Journal Article | IST-REx-ID: 9376 | OA
R. Zhang, T. Auzinger, and B. Bickel, “Computational design of planar multistable compliant structures,” ACM Transactions on Graphics. .
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2021 | Thesis | IST-REx-ID: 9623
S. Caballero Mancebo, “Fertilization-induced deformations are controlled by the actin cortex and a mitochondria-rich subcortical layer in ascidian oocytes,” IST Austria, 2021.
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2020 | Thesis | IST-REx-ID: 8983
S. Emtenani, “Metabolic regulation of Drosophila macrophage tissue invasion,” IST Austria, 2020.
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2020 | Journal Article | IST-REx-ID: 8971 | OA
F. Fäßler, G. A. Dimchev, V.-V. Hodirnau, W. Wan, and F. K. Schur, “Cryo-electron tomography structure of Arp2/3 complex in cells reveals new insights into the branch junction,” Nature Communications, vol. 11. Springer Nature, 2020.
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2020 | Journal Article | IST-REx-ID: 8957
B. G. Godard et al., “Apical relaxation during mitotic rounding promotes tension-oriented cell division,” Developmental Cell, vol. 55, no. 6. Elsevier, pp. 695–706, 2020.
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2020 | Journal Article | IST-REx-ID: 8978 | OA
S. Laukoter, N. Amberg, F. Pauler, and S. Hippenmeyer, “Generation and isolation of single cells from mouse brain with mosaic analysis with double markers-induced uniparental chromosome disomy,” STAR Protocols, vol. 1, no. 3. Elsevier, 2020.
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2020 | Preprint | IST-REx-ID: 8831 | OA
K. Aggarwal et al., “Enhancement of proximity induced superconductivity in planar Germanium,” arXiv. .
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2020 | Journal Article | IST-REx-ID: 8586 | OA
F. Fäßler, B. Zens, R. Hauschild, and F. K. Schur, “3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy,” Journal of Structural Biology, vol. 212, no. 3. Elsevier, 2020.
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2020 | Journal Article | IST-REx-ID: 8943 | OA
S. Tan et al., “Non-steroidal anti-inflammatory drugs target TWISTED DWARF1-regulated actin dynamics and auxin transport-mediated plant development,” Cell Reports, vol. 33, no. 9. Elsevier, 2020.
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2020 | Journal Article | IST-REx-ID: 8562 | OA
K. Gavriil et al., “Computational design of cold bent glass façades,” ACM Transactions on Graphics, vol. 39, no. 6. ACM, 2020.
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2020 | Research Data | IST-REx-ID: 8761 | OA
R. Guseinov, “Supplementary data for ‘Computational design of cold bent glass façades.’” IST Austria, 2020.
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2020 | Journal Article | IST-REx-ID: 9114 | OA
W. J. Hease et al., “Bidirectional electro-optic wavelength conversion in the quantum ground state,” PRX Quantum, vol. 1, no. 2. American Physical Society, 2020.
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2020 | Preprint | IST-REx-ID: 9750 | OA
J. Slovakova et al., “Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion,” bioRxiv. Cold Spring Harbor Laboratory, 2020.
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2020 | Journal Article | IST-REx-ID: 8581
G. Pinke, L. Zhou, and L. A. Sazanov, “Cryo-EM structure of the entire mammalian F-type ATP synthase,” Nature Structural and Molecular Biology, vol. 27, no. 11. Springer Nature, pp. 1077–1085, 2020.
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2020 | Journal Article | IST-REx-ID: 8721
J. Hajny et al., “Receptor kinase module targets PIN-dependent auxin transport during canalization,” Science, vol. 370, no. 6516. American Association for the Advancement of Science, pp. 550–557, 2020.
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2020 | Journal Article | IST-REx-ID: 8737 | OA
D. Kampjut and L. A. Sazanov, “The coupling mechanism of mammalian respiratory complex I,” Science, vol. 370, no. 6516. American Association for the Advancement of Science, 2020.
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2020 | Journal Article | IST-REx-ID: 8755 | OA
M. Peruzzo, A. Trioni, F. Hassani, M. Zemlicka, and J. M. Fink, “Surpassing the resistance quantum with a geometric superinductor,” Physical Review Applied, vol. 14, no. 4. American Physical Society, 2020.
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2020 | Thesis | IST-REx-ID: 8657
B. Kavcic, “Perturbations of protein synthesis: from antibiotics to genetics and physiology,” IST Austria, 2020.
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2020 | Thesis | IST-REx-ID: 8620
J. Morandell, “Illuminating the role of Cul3 in autism spectrum disorder pathogenesis,” IST Austria, 2020.
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2020 | Thesis | IST-REx-ID: 8589
H. Han, “Novel insights into PIN polarity regulation during Arabidopsis development,” IST Austria, 2020.
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2020 | Journal Article | IST-REx-ID: 8162 | OA
S. Laukoter et al., “Cell-type specificity of genomic imprinting in cerebral cortex,” Neuron, vol. 107, no. 6. Elsevier, p. 1160–1179.e9, 2020.
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2020 | Journal Article | IST-REx-ID: 8261 | OA
X. Zhang, A. Schlögl, and P. M. Jonas, “Selective routing of spatial information flow from input to output in hippocampal granule cells,” Neuron, vol. 107, no. 6. Elsevier, pp. 1212–1225, 2020.
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2020 | Thesis | IST-REx-ID: 8366 | OA
R. Guseinov, “Computational design of curved thin shells: From glass façades to programmable matter,” IST Austria, 2020.
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2020 | Preprint | IST-REx-ID: 8557 | OA
V. Belyaeva et al., “Cortical actin properties controlled by Drosophila Fos aid macrophage infiltration against surrounding tissue resistance,” bioRxiv. .
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2020 | Thesis | IST-REx-ID: 8386 | OA
R. Zhang, “Structure-aware computational design and its application to 3D printable volume scattering, mechanism, and multistability,” IST Austria, 2020.
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2020 | Thesis | IST-REx-ID: 8390 | OA
A. Royer, “Leveraging structure in Computer Vision tasks for flexible Deep Learning models,” IST Austria, 2020.
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2020 | Thesis | IST-REx-ID: 8358 | OA
P. R. Dos Santos Caldas, “Organization and dynamics of treadmilling filaments in cytoskeletal networks of FtsZ and its crosslinkers,” IST Austria, 2020.
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2020 | Thesis | IST-REx-ID: 8340
D. Kampjut, “Molecular mechanisms of mitochondrial redox-coupled proton pumping enzymes,” IST Austria, 2020.
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2020 | Thesis | IST-REx-ID: 8350
S. Shamipour, “Bulk actin dynamics drive phase segregation in zebrafish oocytes ,” IST Austria, 2020.
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2020 | Thesis | IST-REx-ID: 8353
J. Steiner, “Biochemical and structural investigation of the Mrp antiporter, an ancestor of complex I,” IST Austria, 2020.
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2020 | Thesis | IST-REx-ID: 8341
U. Bezeljak, “In vitro reconstitution of a Rab activation switch,” IST Austria, 2020.
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2020 | Journal Article | IST-REx-ID: 8529 | OA
G. M. Arnold et al., “Converting microwave and telecom photons with a silicon photonic nanomechanical interface,” Nature Communications, vol. 11. Springer Nature, 2020.
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2020 | Journal Article | IST-REx-ID: 8142 | OA
J. C. Montesinos López et al., “Phytohormone cytokinin guides microtubule dynamics during cell progression from proliferative to differentiated stage,” The Embo Journal, vol. 39, no. 17. Embo Press, 2020.
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2020 | Journal Article | IST-REx-ID: 8336 | OA
K. Kubiasova et al., “Cytokinin fluoroprobe reveals multiple sites of cytokinin perception at plasma membrane and endoplasmic reticulum,” Nature Communications, vol. 11. Springer Nature, 2020.
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2020 | Journal Article | IST-REx-ID: 8337 | OA
I. Antoniadi et al., “Cell-surface receptors enable perception of extracellular cytokinins,” Nature Communications, vol. 11. Springer Nature, 2020.
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2020 | Journal Article | IST-REx-ID: 8139
A. J. Johnson et al., “Experimental toolbox for quantitative evaluation of clathrin-mediated endocytosis in the plant model Arabidopsis,” Journal of Cell Science, vol. 133, no. 15. The Company of Biologists, 2020.
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2020 | Journal Article | IST-REx-ID: 8001 | OA
D. H. Vandael, C. Borges Merjane, X. Zhang, and P. M. Jonas, “Short-term plasticity at hippocampal mossy fiber synapses is induced by natural activity patterns and associated with vesicle pool engram formation,” Neuron, vol. 107, no. 3. Elsevier, pp. 509–521, 2020.
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2020 | Journal Article | IST-REx-ID: 8284 | OA
J. Steiner and L. A. Sazanov, “Structure and mechanism of the Mrp complex, an ancient cation/proton antiporter,” eLife, vol. 9. eLife Sciences Publications, 2020.
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2020 | Research Data | IST-REx-ID: 8097 | OA
B. Kavcic, “Analysis scripts and research data for the paper ‘Mechanisms of drug interactions between translation-inhibiting antibiotics.’” IST Austria, 2020.
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2020 | Conference Paper | IST-REx-ID: 8724 | OA
N. H. Konstantinov, E. Frantar, D.-A. Alistarh, and C. Lampert, “On the sample complexity of adversarial multi-source PAC learning,” in Proceedings of the 37th International Conference on Machine Learning, Online, 2020, vol. 119, pp. 5416–5425.
View | Files available | arXiv
 
2020 | Journal Article | IST-REx-ID: 8384 | OA
S. Ishida, P. Synak, F. Narita, T. Hachisuka, and C. J. Wojtan, “A model for soap film dynamics with evolving thickness,” ACM Transactions on Graphics, vol. 39, no. 4. ACM, 2020.
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2020 | Journal Article | IST-REx-ID: 8385 | OA
G. Sperl, R. Narain, and C. J. Wojtan, “Homogenized yarn-level cloth,” ACM Transactions on Graphics, vol. 39, no. 4. ACM, 2020.
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2020 | Journal Article | IST-REx-ID: 8535 | OA
T. Skrivan, A. Soderstrom, J. Johansson, C. Sprenger, K. Museth, and C. J. Wojtan, “Wave curves: Simulating Lagrangian water waves on dynamically deforming surfaces,” ACM Transactions on Graphics, vol. 39, no. 4. Association for Computing Machinery, 2020.
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2020 | Conference Paper | IST-REx-ID: 8188 | OA
P. M. Henderson and C. Lampert, “Unsupervised object-centric video generation and decomposition in 3D,” in 34th Conference on Neural Information Processing Systems, Vancouver, Canada, 2020, vol. 33, pp. 3106–3117.
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2020 | Journal Article | IST-REx-ID: 8002 | OA
L. Hörmayer, J. C. Montesinos López, P. Marhavá, E. Benková, S. Yoshida, and J. Friml, “Wounding-induced changes in cellular pressure and localized auxin signalling spatially coordinate restorative divisions in roots,” Proceedings of the National Academy of Sciences, vol. 117, no. 26. Proceedings of the National Academy of Sciences, 2020.
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2020 | Thesis | IST-REx-ID: 8032 | OA
K. Huszár, “Combinatorial width parameters for 3-dimensional manifolds,” IST Austria, 2020.
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2020 | Journal Article | IST-REx-ID: 7885
A. REVERSAT et al., “Cellular locomotion using environmental topography,” Nature, vol. 582. Springer Nature, pp. 582–585, 2020.
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2020 | Preprint | IST-REx-ID: 8545 | OA
X. Contreras et al., “A genome-wide library of MADM mice for single-cell genetic mosaic analysis,” bioRxiv. Cold Spring Harbor Laboratory, 2020.
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2020 | Thesis | IST-REx-ID: 7902 | OA
X. Contreras, “Genetic dissection of neural development in health and disease at single cell resolution,” IST Austria, 2020.
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2020 | Journal Article | IST-REx-ID: 8203 | OA
G. Katsaros et al., “Zero field splitting of heavy-hole states in quantum dots,” Nano Letters, vol. 20, no. 7. ACS Publications, pp. 5201–5206, 2020.
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2020 | Journal Article | IST-REx-ID: 7875 | OA
A. Kopf et al., “Microtubules control cellular shape and coherence in amoeboid migrating cells,” The Journal of Cell Biology, vol. 219, no. 6. Rockefeller University Press, 2020.
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2020 | Journal Article | IST-REx-ID: 5681 | OA
I. Hikaru, C. J. Wojtan, N. Thuerey, T. Igarashi, and R. Ando, “Simulating liquids on dynamically warping grids,” IEEE Transactions on Visualization and Computer Graphics, vol. 26, no. 6. IEEE, pp. 2288–2302, 2020.
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2020 | Journal Article | IST-REx-ID: 7814 | OA
R. J. Beattie, S. Hippenmeyer, and F. Pauler, “SCOPES: Sparking curiosity through Open-Source platforms in education and science,” Frontiers in Education, vol. 5. Frontiers Media, 2020.
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2020 | Journal Article | IST-REx-ID: 7815 | OA
R. J. Beattie et al., “Lineage tracing and clonal analysis in developing cerebral cortex using mosaic analysis with double markers (MADM),” Journal of Visual Experiments (JoVE), no. 159. 2020.
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2020 | Journal Article | IST-REx-ID: 8765 | OA
C. Schreck and C. J. Wojtan, “A practical method for animating anisotropic elastoplastic materials,” Computer Graphics Forum, vol. 39, no. 2. Wiley, pp. 89–99, 2020.
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2020 | Journal Article | IST-REx-ID: 7600 | OA
S. Tan et al., “The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin efflux in Arabidopsis,” Nature Plants, vol. 6. Springer Nature, pp. 556–569, 2020.
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2020 | Journal Article | IST-REx-ID: 7619 | OA
X. Zhang et al., “Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin transporters,” The Plant Cell, vol. 32, no. 5. American Society of Plant Biologists, pp. 1644–1664, 2020.
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2020 | Journal Article | IST-REx-ID: 7805 | OA
Hurny A, Cuesta C, Cavallari N, Ötvös K, Duclercq J, Dokládal L, Montesinos López JC, Gallemi M, Semeradova H, Rauter T, Stenzel I, Persiau G, Benade F, Bhalearo R, Sýkorová E, Gorzsás A, Sechet J, Mouille G, Heilmann I, De Jaeger G, Ludwig-Müller J, Benková E. 2020. Synergistic on Auxin and Cytokinin 1 positively regulates growth and attenuates soil pathogen resistance. Nature Communications. 11, 2170.
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2020 | Journal Article | IST-REx-ID: 7541 | OA
F. Gao et al., “Site-controlled uniform Ge/Si hut wires with electrically tunable spin-orbit coupling,” Advanced Materials, vol. 32, no. 16. Wiley, 2020.
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2020 | Journal Article | IST-REx-ID: 7580 | OA
U. Bezeljak, H. Loya, B. M. Kaczmarek, T. E. Saunders, and M. Loose, “Stochastic activation and bistability in a Rab GTPase regulatory network,” Proceedings of the National Academy of Sciences, vol. 117, no. 12. Proceedings of the National Academy of Sciences, pp. 6504–6549, 2020.
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2020 | Journal Article | IST-REx-ID: 7343 | OA
B. Milutinovic, M. Stock, A. V. Grasse, E. Naderlinger, C. Hilbe, and S. Cremer, “Social immunity modulates competition between coinfecting pathogens,” Ecology Letters, vol. 23, no. 3. Wiley, pp. 565–574, 2020.
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2020 | Thesis | IST-REx-ID: 7525 | OA
P. Bhandari, “Localization and functional role of Cav2.3 in the medial habenula to interpeduncular nucleus pathway,” IST Austria, 2020.
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2020 | Journal Article | IST-REx-ID: 7427 | OA
S. Tan et al., “Salicylic acid targets protein phosphatase 2A to attenuate growth in plants,” Current Biology, vol. 30, no. 3. Cell Press, p. 381–395.e8, 2020.
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2020 | Journal Article | IST-REx-ID: 7464 | OA
R. A. Dick et al., “Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly,” PLOS Pathogens, vol. 16, no. 1. PLoS, 2020.
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2020 | Research Data Reference | IST-REx-ID: 9723 | OA
R. A. Dick et al., “Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly.” Public Library of Science , 2020.
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2020 | Journal Article | IST-REx-ID: 7490 | OA
M. Narasimhan et al., “Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants,” eLife, vol. 9. eLife Sciences Publications, 2020.
View | Files available | DOI | PubMed | Europe PMC
 
2020 | Preprint | IST-REx-ID: 7800 | OA
J. Morandell et al., “Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development,” bioRxiv. Cold Spring Harbor Laboratory.
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2020 | Journal Article | IST-REx-ID: 7253 | OA
S. Laukoter, R. J. Beattie, F. Pauler, N. Amberg, K. I. Nakayama, and S. Hippenmeyer, “Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex development,” Nature Communications, vol. 11. Springer Nature, 2020.
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2020 | Journal Article | IST-REx-ID: 7252
C. Borges Merjane, O. Kim, and P. M. Jonas, “Functional Electron Microscopy (‘Flash and Freeze’) of Identified Cortical Synapses in Acute Brain Slices,” Neuron. Elsevier BV, 2020.
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2019 | Journal Article | IST-REx-ID: 7197 | OA
P. R. Dos Santos Caldas, M. D. Lopez Pelegrin, D. J. G. Pearce, N. B. Budanur, J. Brugués, and M. Loose, “Cooperative ordering of treadmilling filaments in cytoskeletal networks of FtsZ and its crosslinker ZapA,” Nature Communications, vol. 10. Springer Nature, 2019.
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2019 | Thesis | IST-REx-ID: 7186 | OA
C. Schwayer, “Mechanosensation of tight junctions depends on ZO-1 phase separation and flow,” IST Austria, 2019.
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2019 | Thesis | IST-REx-ID: 7172 | OA
M. K. Vasileva, “Molecular mechanisms of endomembrane trafficking in Arabidopsis thaliana,” IST Austria, 2019.
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2019 | Journal Article | IST-REx-ID: 7026 | OA
M. Lukacisin and M. T. Bollenbach, “Emergent gene expression responses to drug combinations predict higher-order drug interactions,” Cell Systems, vol. 9, no. 5. Cell Press, pp. 423-433.e1-e3, 2019.
View | Files available | DOI
 
2019 | Journal Article | IST-REx-ID: 6486 | OA
J. Kühnen, D. Scarselli, and B. Hof, “Relaminarization of pipe flow by means of 3D-printed shaped honeycombs,” Journal of Fluids Engineering, vol. 141, no. 11. ASME, 2019.
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2019 | Journal Article | IST-REx-ID: 7001 | OA
C. Schwayer et al., “Mechanosensation of tight junctions depends on ZO-1 phase separation and flow,” Cell, vol. 179, no. 4. Cell Press, p. 937–952.e18, 2019.
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2019 | Thesis | IST-REx-ID: 6947 | OA
F. P. Assen, “Lymph node mechanics: Deciphering the interplay between stroma contractility, morphology and lymphocyte trafficking,” IST Austria, 2019.
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2019 | Journal Article | IST-REx-ID: 6978 | OA
N. B. Budanur, A. Dogra, and B. Hof, “Geometry of transient chaos in streamwise-localized pipe flow turbulence,” Physical Review Fluids, vol. 4, no. 10. American Physical Society, p. 102401, 2019.
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2019 | Journal Article | IST-REx-ID: 6848 | OA
D. Kampjut and L. A. Sazanov, “Structure and mechanism of mitochondrial proton-translocating transhydrogenase,” Nature, vol. 573, no. 7773. Springer Nature, pp. 291–295, 2019.
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2019 | Journal Article | IST-REx-ID: 6897 | OA
Q. Zhu, M. Gallemi, J. Pospíšil, P. Žádníková, M. Strnad, and E. Benková, “Root gravity response module guides differential growth determining both root bending and apical hook formation in Arabidopsis,” Development, vol. 146, no. 17. The Company of Biologists, 2019.
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2019 | Thesis | IST-REx-ID: 6849 | OA
D. K. Rangel Guerrero, “The role of CCK-interneurons in regulating hippocampal network dynamics,” IST Austria, 2019.
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2019 | Journal Article | IST-REx-ID: 6859
L. Zhou and L. A. Sazanov, “Structure and conformational plasticity of the intact Thermus thermophilus V/A-type ATPase,” Science, vol. 365, no. 6455. AAAS, 2019.
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2019 | Journal Article | IST-REx-ID: 6442 | OA
C. Schreck, C. Hafner, and C. J. Wojtan, “Fundamental solutions for water wave animation,” ACM Transactions on Graphics, vol. 38, no. 4. ACM, 2019.
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2019 | Journal Article | IST-REx-ID: 6755 | OA
M. A. L. Picard et al., “Dosage compensation throughout the Schistosoma mansoni lifecycle: Specific chromatin landscape of the Z chromosome,” Genome biology and evolution, vol. 11, no. 7. Oxford Academic Press, pp. 1909–1922, 2019.
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2019 | Journal Article | IST-REx-ID: 6609 | OA
S. Barzanjeh et al., “Stationary entangled radiation from micromechanical motion,” Nature, vol. 570. Nature Publishing Group, pp. 480–483, 2019.
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2019 | Journal Article | IST-REx-ID: 6611 | OA
M. Glanc, M. Fendrych, and J. Friml, “PIN2 polarity establishment in arabidopsis in the absence of an intact cytoskeleton,” Biomolecules, vol. 9, no. 6. MDPI, 2019.
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2019 | Thesis | IST-REx-ID: 6546 | OA
K. Valosková, “The role of a highly conserved major facilitator superfamily member in Drosophila embryonic macrophage migration,” IST Austria, 2019.
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2019 | Journal Article | IST-REx-ID: 6508 | OA
S. Shamipour, R. Kardos, S. Xue, B. Hof, E. B. Hannezo, and C.-P. J. Heisenberg, “Bulk actin dynamics drive phase segregation in zebrafish oocytes,” Cell, vol. 177, no. 6. Elsevier, p. 1463–1479.e18, 2019.
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2019 | Thesis | IST-REx-ID: 6392 | OA
M. Lukacisin, “Quantitative investigation of gene expression principles through combinatorial drug perturbation and theory,” IST Austria, 2019.
View | Files available | DOI
 
2019 | Thesis | IST-REx-ID: 6435 | OA
B. E. Casillas Perez, “Collective defenses of garden ants against a fungal pathogen,” IST Austria, 2019.
View | Files available | DOI
 
2019 | Journal Article | IST-REx-ID: 6351 | OA
P. Marhavá, L. Hörmayer, S. Yoshida, P. Marhavý, E. Benková, and J. Friml, “Re-activation of stem cell pathways for pattern restoration in plant wound healing,” Cell, vol. 177, no. 4. Elsevier, p. 957–969.e13, 2019.
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2019 | Journal Article | IST-REx-ID: 6603 | OA
P. Marhavá, L. Hörmayer, S. Yoshida, P. Marhavý, E. Benková, and J. Friml, “Re-activation of stem cell pathways for pattern restoration in plant wound healing,” Cell, vol. 177, no. 4, p. 957–969.e13, 2019.
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2019 | Journal Article | IST-REx-ID: 6328 | OA
J. Renkawitz et al., “Nuclear positioning facilitates amoeboid migration along the path of least resistance,” Nature, vol. 568. Springer Nature, pp. 546–550, 2019.
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2019 | Journal Article | IST-REx-ID: 6418 | OA
A. K. Huylmans, M. A. Toups, A. Macon, W. J. Gammerdinger, and B. Vicoso, “Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome,” Genome biology and evolution, vol. 11, no. 4. Oxford University Press, pp. 1033–1044, 2019.
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2019 | Journal Article | IST-REx-ID: 6187 | OA
K. Valosková et al., “A conserved major facilitator superfamily member orchestrates a subset of O-glycosylation to aid macrophage tissue invasion,” eLife, vol. 8. eLife Sciences Publications, 2019.
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2019 | Journal Article | IST-REx-ID: 6087 | OA
P. Xia, D. J. Gütl, V. Zheden, and C.-P. J. Heisenberg, “Lateral inhibition in cell specification mediated by mechanical signals modulating TAZ activity,” Cell, vol. 176, no. 6. Elsevier, p. 1379–1392.e14, 2019.
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2019 | Journal Article | IST-REx-ID: 6046 | OA
K. Mitosch, G. Rieckh, and M. T. Bollenbach, “Temporal order and precision of complex stress responses in individual bacteria,” Molecular systems biology, vol. 15, no. 2. Embo Press, 2019.
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2019 | Journal Article | IST-REx-ID: 6025 | OA
D. Capek, M. Smutny, A. M. Tichy, M. Morri, H. L. Janovjak, and C.-P. J. Heisenberg, “Light-activated Frizzled7 reveals a permissive role of non-canonical wnt signaling in mesendoderm cell migration,” eLife, vol. 8. eLife Sciences Publications, 2019.
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2019 | Thesis | IST-REx-ID: 6269 | OA
M. Narasimhan, “Clathrin-Mediated endocytosis, post-endocytic trafficking and their regulatory controls in plants ,” IST Austria, 2019.
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2019 | Journal Article | IST-REx-ID: 5789 | OA
N. Petridou, S. Grigolon, G. Salbreux, E. B. Hannezo, and C.-P. J. Heisenberg, “Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical Wnt signalling,” Nature Cell Biology, vol. 21. Nature Publishing Group, pp. 169–178, 2019.
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2019 | Journal Article | IST-REx-ID: 7406
C. Mckenzie et al., “Isolation of synaptic vesicles from genetically engineered cultured neurons,” Journal of Neuroscience Methods, vol. 312. Elsevier, pp. 114–121, 2019.
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2018 | Thesis | IST-REx-ID: 6263 | OA
M. Lukacisinova, “Genetic determinants of antibiotic resistance evolution,” IST Austria, 2018.
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2018 | Journal Article | IST-REx-ID: 3 | OA
E. Deliu et al., “Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition,” Nature Neuroscience, vol. 21, no. 12. Nature Publishing Group, pp. 1717–1727, 2018.
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2018 | Journal Article | IST-REx-ID: 23 | OA
L. Vukušić, J. Kukucka, H. Watzinger, J. M. Milem, F. Schäffler, and G. Katsaros, “Single-shot readout of hole spins in Ge,” Nano Letters, vol. 18, no. 11. American Chemical Society, pp. 7141–7145, 2018.
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2018 | Journal Article | IST-REx-ID: 44 | OA
C. J. Turner, A. Michailidis, D. A. Abanin, M. Serbyn, and Z. Papić, “Quantum scarred eigenstates in a Rydberg atom chain: Entanglement, breakdown of thermalization, and stability to perturbations,” Physical Review B, vol. 98, no. 15. American Physiological Society, 2018.
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2018 | Journal Article | IST-REx-ID: 77 | OA
H. Watzinger et al., “A germanium hole spin qubit,” Nature Communications, vol. 9, no. 3902. Nature Publishing Group, 2018.
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2018 | Journal Article | IST-REx-ID: 134 | OA
S. Jeschke, T. Skrivan, M. Mueller Fischer, N. Chentanez, M. Macklin, and C. J. Wojtan, “Water surface wavelets,” ACM Transactions on Graphics, vol. 37, no. 4. ACM, 2018.
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2018 | Journal Article | IST-REx-ID: 15 | OA
M. Hons et al., “Chemokines and integrins independently tune actin flow and substrate friction during intranodal migration of T cells,” Nature Immunology, vol. 19, no. 6. Nature Publishing Group, pp. 606–616, 2018.
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2018 | Journal Article | IST-REx-ID: 308 | OA
A. Ratheesh et al., “Drosophila TNF modulates tissue tension in the embryo to facilitate macrophage invasive migration,” Developmental Cell, vol. 45, no. 3. Elsevier, pp. 331–346, 2018.
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2018 | Thesis | IST-REx-ID: 323 | OA
A. F. Leithner, “Branched actin networks in dendritic cell biology,” IST Austria, 2018.
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2018 | Journal Article | IST-REx-ID: 402 | OA
M. Brown et al., “Lymph node blood vessels provide exit routes for metastatic tumor cell dissemination in mice,” Science, vol. 359, no. 6382. American Association for the Advancement of Science, pp. 1408–1411, 2018.
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2018 | Journal Article | IST-REx-ID: 328 | OA
G. H. Choueiri, J. M. Lopez Alonso, and B. Hof, “Exceeding the asymptotic limit of polymer drag reduction,” Physical Review Letters, vol. 120, no. 12. American Physiological Society, 2018.
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2018 | Journal Article | IST-REx-ID: 326 | OA
K. Sawada, R. Kawakami, R. Shigemoto, and T. Nemoto, “Super resolution structural analysis of dendritic spines using three-dimensional structured illumination microscopy in cleared mouse brain slices,” European Journal of Neuroscience, vol. 47, no. 9. Wiley, pp. 1033–1042, 2018.
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2018 | Thesis | IST-REx-ID: 395 | OA
D.-C. Tarlungeanu, “The branched chain amino acids in autism spectrum disorders ,” IST Austria, 2018.
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2018 | Journal Article | IST-REx-ID: 544 | OA
A. György et al., “Tools allowing independent visualization and genetic manipulation of Drosophila melanogaster macrophages and surrounding tissues,” G3: Genes, Genomes, Genetics, vol. 8, no. 3. Genetics Society of America, pp. 845–857, 2018.
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2018 | Journal Article | IST-REx-ID: 503
K. Tomasek, T. Bergmiller, and C. C. Guet, “Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains,” Journal of Biotechnology, vol. 268. Elsevier, pp. 40–52, 2018.
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2018 | Journal Article | IST-REx-ID: 437 | OA
A. F. Leithner, J. Renkawitz, I. de Vries, R. Hauschild, H. Haecker, and M. K. Sixt, “Fast and efficient genetic engineering of hematopoietic precursor cells for the study of dendritic cell migration,” European Journal of Immunology, vol. 48, no. 6. Wiley-Blackwell, pp. 1074–1077, 2018.
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2017 | Book Chapter | IST-REx-ID: 1213
N. S. Baranova and M. Loose, “Single-molecule measurements to study polymerization dynamics of FtsZ-FtsA copolymers,” in Cytokinesis, vol. 137, A. Echard, Ed. Academic Press, 2017, pp. 355–370.
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2017 | Journal Article | IST-REx-ID: 749 | OA
C. Chen, R. Satterfield, S. Young, and P. M. Jonas, “Triple function of Synaptotagmin 7 ensures efficiency of high-frequency transmission at central GABAergic synapses,” Cell Reports, vol. 21, no. 8. Cell Press, pp. 2082–2089, 2017.
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2017 | Journal Article | IST-REx-ID: 804 | OA
P. S. Schmalhorst, F. Deluweit, R. Scherrers, C.-P. J. Heisenberg, and M. K. Sikora, “Overcoming the limitations of the MARTINI force field in simulations of polysaccharides,” Journal of Chemical Theory and Computation, vol. 13, no. 10. American Chemical Society, pp. 5039–5053, 2017.
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2017 | Journal Article | IST-REx-ID: 727
J. Mueller et al., “Load adaptation of lamellipodial actin networks,” Cell, vol. 171, no. 1. Cell Press, pp. 188–200, 2017.
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2017 | Journal Article | IST-REx-ID: 803 | OA
M. Samwer et al., “DNA cross-bridging shapes a single nucleus from a set of mitotic chromosomes,” Cell, vol. 170, no. 5. Cell Press, pp. 956–972, 2017.
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2017 | Journal Article | IST-REx-ID: 840 | OA
L. Vukušić, J. Kukucka, H. Watzinger, and G. Katsaros, “Fast hole tunneling times in germanium hut wires probed by single-shot reflectometry,” Nano Letters, vol. 17, no. 9. American Chemical Society, pp. 5706–5710, 2017.
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2017 | Journal Article | IST-REx-ID: 470 | OA
S. Jeschke and C. J. Wojtan, “Water wave packets,” ACM Transactions on Graphics, vol. 36, no. 4. ACM, 2017.
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2017 | Journal Article | IST-REx-ID: 946 | OA
D. von Wangenheim, R. Hauschild, M. Fendrych, V. Barone, E. Benková, and J. Friml, “Live tracking of moving samples in confocal microscopy for vertically grown roots,” eLife, vol. 6. eLife Sciences Publications, 2017.
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2017 | Journal Article | IST-REx-ID: 944
R. J. Beattie et al., “Mosaic analysis with double markers reveals distinct sequential functions of Lgl1 in neural stem cells,” Neuron, vol. 94, no. 3. Cell Press, p. 517–533.e3, 2017.
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2017 | Journal Article | IST-REx-ID: 661 | OA
M. Smutny et al., “Friction forces position the neural anlage,” Nature Cell Biology, vol. 19. Nature Publishing Group, pp. 306–317, 2017.
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2017 | Journal Article | IST-REx-ID: 1067 | OA
H. Morita, S. Grigolon, M. Bock, G. Krens, G. Salbreux, and C.-P. J. Heisenberg, “The physical basis of coordinated tissue spreading in zebrafish gastrulation,” Developmental Cell, vol. 40, no. 4. Cell Press, pp. 354–366, 2017.
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2017 | Journal Article | IST-REx-ID: 1087 | OA
B. Song, D. Barkley, B. Hof, and M. Avila, “Speed and structure of turbulent fronts in pipe flow,” Journal of Fluid Mechanics, vol. 813. Cambridge University Press, pp. 1045–1059, 2017.
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2017 | Journal Article | IST-REx-ID: 1078 | OA
D. von Wangenheim, R. Hauschild, and J. Friml, “Light sheet fluorescence microscopy of plant roots growing on the surface of a gel,” Journal of visualized experiments JoVE, vol. 2017, no. 119. Journal of Visualized Experiments, 2017.
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2017 | Journal Article | IST-REx-ID: 1118 | OA
J. Gan, S.-M. Weng, A. Pernia-Andrade, J. L. Csicsvari, and P. M. Jonas, “Phase-locked inhibition, but not excitation, underlies hippocampal ripple oscillations in awake mice in vivo,” Neuron, vol. 93, no. 2. Elsevier, pp. 308–314, 2017.
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2017 | Journal Article | IST-REx-ID: 1117 | OA
C. Chen, itaru Arai, R. Satterield, S. Young, and P. M. Jonas, “Synaptotagmin 2 is the fast Ca2+ sensor at a central inhibitory synapse,” Cell Reports, vol. 18, no. 3. Cell Press, pp. 723–736, 2017.
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2016 | Journal Article | IST-REx-ID: 1323 | OA
N. Vyleta, C. Borges Merjane, and P. M. Jonas, “Plasticity-dependent, full detonation at hippocampal mossy fiber–CA3 pyramidal neuron synapses,” eLife, vol. 5. eLife Sciences Publications, 2016.
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2016 | Journal Article | IST-REx-ID: 1321 | OA
A. F. Leithner et al., “Diversified actin protrusions promote environmental exploration but are dispensable for locomotion of leukocytes,” Nature Cell Biology, vol. 18. Nature Publishing Group, pp. 1253–1259, 2016.
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2016 | Journal Article | IST-REx-ID: 1350 | OA
J. Guzmán, A. Schlögl, M. Frotscher, and P. M. Jonas, “Synaptic mechanisms of pattern completion in the hippocampal CA3 network,” Science, vol. 353, no. 6304. American Association for the Advancement of Science, pp. 1117–1123, 2016.
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2016 | Journal Article | IST-REx-ID: 1271 | OA
A. Diz Muñoz et al., “Steering cell migration by alternating blebs and actin-rich protrusions,” BMC Biology, vol. 14, no. 1. BioMed Central, 2016.
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2016 | Book Chapter | IST-REx-ID: 1094
H. Harada and R. Shigemoto, “Immunogold protein localization on grid-glued freeze-fracture replicas,” in High-Resolution Imaging of Cellular Proteins, vol. 1474, Springer, 2016, pp. 203–216.
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2016 | Journal Article | IST-REx-ID: 1100 | OA
K. Sako et al., “Optogenetic control of nodal signaling reveals a temporal pattern of nodal signaling regulating cell fate specification during gastrulation,” Cell Reports, vol. 16, no. 3. Cell Press, pp. 866–877, 2016.
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2016 | Conference Paper | IST-REx-ID: 1363 | OA
M. Bojsen-Hansen and C. J. Wojtan, “Generalized non-reflecting boundaries for fluid re-simulation,” presented at the ACM SIGGRAPH, Anaheim, CA, USA, 2016, vol. 35, no. 4.
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2016 | Thesis | IST-REx-ID: 1129 | OA
J. Schwarz, “Quantitative analysis of haptotactic cell migration,” IST Austria, 2016.
View | Files available
 
2016 | Journal Article | IST-REx-ID: 1492 | OA
P. Marhavý et al., “Targeted cell elimination reveals an auxin-guided biphasic mode of lateral root initiation,” Genes and Development, vol. 30, no. 4. Cold Spring Harbor Laboratory Press, pp. 471–483, 2016.
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2016 | Journal Article | IST-REx-ID: 1599 | OA
E. Kiermaier et al., “Polysialylation controls dendritic cell trafficking by regulating chemokine recognition,” Science, vol. 351, no. 6269. American Association for the Advancement of Science, pp. 186–190, 2016.
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2016 | Journal Article | IST-REx-ID: 1597
J. Schwarz and M. K. Sixt, “Quantitative analysis of dendritic cell haptotaxis,” Methods in Enzymology, vol. 570. Elsevier, pp. 567–581, 2016.
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2015 | Journal Article | IST-REx-ID: 1537 | OA
V. Ruprecht et al., “Cortical contractility triggers a stochastic switch to fast amoeboid cell motility,” Cell, vol. 160, no. 4. Cell Press, pp. 673–685, 2015.
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2015 | Journal Article | IST-REx-ID: 1993 | OA
M. Konrad, A. V. Grasse, S. Tragust, and S. Cremer, “Anti-pathogen protection versus survival costs mediated by an ectosymbiont in an ant host,” Proceedings of the Royal Society of London Series B Biological Sciences, vol. 282, no. 1799. Royal Society, 2015.
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2015 | Journal Article | IST-REx-ID: 1640 | OA
M. Šimášková et al., “Cytokinin response factors regulate PIN-FORMED auxin transporters,” Nature Communications, vol. 6. Nature Publishing Group, 2015.
View | Files available | DOI
 
2014 | Thesis | IST-REx-ID: 1403
M. Behrndt, “Forces driving epithelial spreading in zebrafish epiboly,” IST Austria, 2014.
View | Files available
 
2013 | Journal Article | IST-REx-ID: 2282 | OA
P. Campinho, M. Behrndt, J. Ranft, T. Risler, N. Minc, and C.-P. J. Heisenberg, “Tension-oriented cell divisions limit anisotropic tissue tension in epithelial spreading during zebrafish epiboly,” Nature Cell Biology, vol. 15. Nature Publishing Group, pp. 1405–1414, 2013.
View | Files available | DOI | Download Submitted Version (ext.)
 
2013 | Thesis | IST-REx-ID: 1406
P. Campinho, “Mechanics of zebrafish epiboly: Tension-oriented cell divisions limit anisotropic tissue tension in epithelial spreading,” IST Austria, 2013.
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2013 | Journal Article | IST-REx-ID: 2944
S. Aeschbacher, A. Futschik, and M. Beaumont, “Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates. ,” Molecular Ecology, vol. 22, no. 4. Wiley-Blackwell, pp. 987–1002, 2013.
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2012 | Journal Article | IST-REx-ID: 2962 | OA
S. Aeschbacher, M. Beaumont, and A. Futschik, “A novel approach for choosing summary statistics in approximate Bayesian computation,” Genetics, vol. 192, no. 3. Genetics Society of America, pp. 1027–1047, 2012.
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2012 | Journal Article | IST-REx-ID: 2950
M. Behrndt et al., “Forces driving epithelial spreading in zebrafish gastrulation,” Science, vol. 338, no. 6104. American Association for the Advancement of Science, pp. 257–260, 2012.
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2012 | Journal Article | IST-REx-ID: 2951
J.-L. Maître et al., “Adhesion functions in cell sorting by mechanically coupling the cortices of adhering cells,” Science, vol. 338, no. 6104. American Association for the Advancement of Science, pp. 253–256, 2012.
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2011 | Journal Article | IST-REx-ID: 3396 | OA
P. Stockinger, C.-P. J. Heisenberg, and J.-L. Maître, “Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube,” Development, vol. 138, no. 21. Company of Biologists, pp. 4673–4683, 2011.
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2010 | Journal Article | IST-REx-ID: 4157 | OA
E. Papusheva and C.-P. J. Heisenberg, “Spatial organization of adhesion: force-dependent regulation and function in tissue morphogenesis,” EMBO Journal, vol. 29, no. 16. Wiley-Blackwell, pp. 2753–2768, 2010.
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