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Anastasiia Heurteur

Roland Gansch

Gabriele Buchner-Kranzl

386 Publications

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2024 | Journal Article | IST-REx-ID: 15301 |

Hörmayer L, Montesinos López JC, Trozzi N, et al. Mechanical forces in plant tissue matrix orient cell divisions via microtubule stabilization. Dev Cell. 2024:S1534-5807(24)00177-1. doi:10.1016/j.devcel.2024.03.009

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2024 | Journal Article | IST-REx-ID: 15323

Vercellino I, Sazanov LA. SCAF1 drives the compositional diversity of mammalian respirasomes. Nature Structural and Molecular Biology. 2024. doi:10.1038/s41594-024-01255-0

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2024 | Journal Article | IST-REx-ID: 15313 |

Agasthya LN, Muller CJ. Dynamics and scaling of internally cooled convection. Communications in Nonlinear Science and Numerical Simulation. 2024;134. doi:10.1016/j.cnsns.2024.108011

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2024 | Journal Article | IST-REx-ID: 15250 |

Boytsov D, Madej GM, Horn G, et al. Orphan lysosomal solute carrier MFSD1 facilitates highly selective dipeptide transport. Proceedings of the National Academy of Sciences of the United States of America. 2024;121(13). doi:10.1073/pnas.2319686121

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2024 | Journal Article | IST-REx-ID: 15146 |

Zens B, Fäßler F, Hansen J, et al. Lift-out cryo-FIBSEM and cryo-ET reveal the ultrastructural landscape of extracellular matrix. Journal of Cell Biology. 2024;223(6). doi:10.1083/jcb.202309125

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2024 | Journal Article | IST-REx-ID: 15182 |

Kleinhanns T, Milillo F, Calcabrini M, et al. A route to high thermoelectric performance: Solution‐based control of microstructure and composition in Ag2Se. Advanced Energy Materials. 2024. doi:10.1002/aenm.202400408

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2024 | Thesis | IST-REx-ID: 15101 |

Chen J. Developmental transformation of nanodomain coupling between Ca2+ channels and release sensors at a central GABAergic synapse. 2024. doi:10.15479/at:ista:15101

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2024 | Journal Article | IST-REx-ID: 15257 |

Kulich I, Schmid J, Teplova A, Qi L, Friml J. Rapid translocation of NGR proteins driving polarization of PIN-activating D6 protein kinase during root gravitropism. eLife. 2024;12. doi:10.7554/elife.91523.3

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2024 | Journal Article | IST-REx-ID: 15118

Nußbaum P, Kureisaite-Ciziene D, Bellini D, et al. Proteins containing photosynthetic reaction centre domains modulate FtsZ-based archaeal cell division. Nature Microbiology. 2024;9(3):698-711. doi:10.1038/s41564-024-01600-5

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2024 | Thesis | IST-REx-ID: 15020 |

Hledik M. Genetic information and biological optimization. 2024. doi:10.15479/at:ista:15020

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2024 | Journal Article | IST-REx-ID: 15084 |

Koppensteiner P, Bhandari P, Önal C, et al. GABAB receptors induce phasic release from medial habenula terminals through activity-dependent recruitment of release-ready vesicles. Proceedings of the National Academy of Sciences. 2024;121(8). doi:10.1073/pnas.2301449121

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2024 | Journal Article | IST-REx-ID: 14979 |

Datler J, Hansen J, Thader A, et al. Multi-modal cryo-EM reveals trimers of protein A10 to form the palisade layer in poxvirus cores. Nature Structural & Molecular Biology. 2024. doi:10.1038/s41594-023-01201-6

2024 | Journal Article | IST-REx-ID: 15048 |

Schauer A, Pranjic-Ferscha K, Hauschild R, Heisenberg C-PJ. Robust axis elongation by Nodal-dependent restriction of BMP signaling. Development. 2024;151(4):1-18. doi:10.1242/dev.202316

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2024 | Thesis | IST-REx-ID: 14711 |

Olusanya OO. Local adaptation, genetic load and extinction in metapopulations. 2024. doi:10.15479/at:ista:14711

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2024 | Journal Article | IST-REx-ID: 12875 |

Cheung GT, Pauler F, Koppensteiner P, et al. Multipotent progenitors instruct ontogeny of the superior colliculus. Neuron. 2024;112(2):230-246.e11. doi:10.1016/j.neuron.2023.11.009

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2024 | Journal Article | IST-REx-ID: 14843

Chen J, Kaufmann W, Chen C, et al. Developmental transformation of Ca2+ channel-vesicle nanotopography at a central GABAergic synapse. Neuron. doi:10.1016/j.neuron.2023.12.002

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2024 | Journal Article | IST-REx-ID: 14846 |

Caballero Mancebo S, Shinde R, Bolger-Munro M, et al. Friction forces determine cytoplasmic reorganization and shape changes of ascidian oocytes upon fertilization. Nature Physics. 2024. doi:10.1038/s41567-023-02302-1

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2024 | Journal Article | IST-REx-ID: 14795 |

Arslan FN, Hannezo EB, Merrin J, Loose M, Heisenberg C-PJ. Adhesion-induced cortical flows pattern E-cadherin-mediated cell contacts. Current Biology. 2024;34(1):171-182.e8. doi:10.1016/j.cub.2023.11.067

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2024 | Journal Article | IST-REx-ID: 14793 |

Valentini M, Sagi O, Baghumyan L, et al. Parity-conserving Cooper-pair transport and ideal superconducting diode in planar germanium. Nature Communications. 2024;15. doi:10.1038/s41467-023-44114-0

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2024 | Journal Article | IST-REx-ID: 14794 |

Hansen AH, Hippenmeyer S. Time-lapse imaging of cortical projection neuron migration in mice using mosaic analysis with double markers. STAR Protocols. 2024;5(1). doi:10.1016/j.xpro.2023.102795

2023 | Thesis | IST-REx-ID: 14697

Stopp JA. Neutrophils on the hunt: Migratory strategies employed by neutrophils to fulfill their effector function. 2023. doi:10.15479/at:ista:14697

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2023 | Thesis | IST-REx-ID: 14651 |

Arathoon LS. Investigating inbreeding depression and the self-incompatibility locus of Antirrhinum majus. 2023. doi:10.15479/at:ista:14651

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2023 | Journal Article | IST-REx-ID: 14683 |

Amberg N, Cheung GT, Hippenmeyer S. Protocol for sorting cells from mouse brains labeled with mosaic analysis with double markers by flow cytometry. STAR Protocols. 2023;5(1). doi:10.1016/j.xpro.2023.102771

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2023 | Preprint | IST-REx-ID: 14644 |

Tluckova K, Testa Salmazo AP, Bernecky C. Mechanism of mammalian transcriptional repression by noncoding RNA. doi:10.15479/AT:ISTA:14644

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2023 | Journal Article | IST-REx-ID: 14719

Mollania H, Zhang C, Du R, et al. Nanostructured Li₂S cathodes for silicon-sulfur batteries. ACS Applied Materials and Interfaces. 2023;15(50):58462–58475. doi:10.1021/acsami.3c14072

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2023 | Journal Article | IST-REx-ID: 14613 |

Lasne C, Elkrewi MN, Toups MA, Layana Franco LA, Macon A, Vicoso B. The scorpionfly (Panorpa cognata) genome highlights conserved and derived features of the peculiar dipteran X chromosome. Molecular Biology and Evolution. 2023;40(12). doi:10.1093/molbev/msad245

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2023 | Journal Article | IST-REx-ID: 13314 |

Dunajova Z, Prats Mateu B, Radler P, et al. Chiral and nematic phases of flexible active filaments. Nature Physics. 2023;19:1916-1926. doi:10.1038/s41567-023-02218-w

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2023 | Thesis | IST-REx-ID: 14641

Hennessey-Wesen M. Adaptive mutation in E. coli modulated by luxS. 2023. doi:10.15479/at:ista:14641

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2023 | Research Data | IST-REx-ID: 14562 |

Schur FK. Research data of the publication “ArpC5 isoforms regulate Arp2/3 complex-dependent protrusion through differential Ena/VASP positioning.” 2023. doi:10.15479/AT:ISTA:14562

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2023 | Thesis | IST-REx-ID: 14530 |

Riedl M. Synchronization in collectively moving active matter. 2023. doi:10.15479/14530

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2023 | Thesis | IST-REx-ID: 14547 |

Phan DT. Resonant microwave spectroscopy of Al-InAs. 2023. doi:10.15479/14547

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2023 | Thesis | IST-REx-ID: 14510

Gnyliukh N. Mechanism of clathrin-coated vesicle formation during endocytosis in plants. 2023. doi:10.15479/at:ista:14510

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2023 | Journal Article | IST-REx-ID: 14032 |

Mukhopadhyay S, Senior JL, Saez Mollejo J, et al. Superconductivity from a melted insulator in Josephson junction arrays. Nature Physics. 2023;19:1630-1635. doi:10.1038/s41567-023-02161-w

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2023 | Journal Article | IST-REx-ID: 14517 |

Zemlicka M, Redchenko E, Peruzzo M, et al. Compact vacuum-gap transmon qubits: Selective and sensitive probes for superconductor surface losses. Physical Review Applied. 2023;20(4). doi:10.1103/PhysRevApplied.20.044054

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2023 | Journal Article | IST-REx-ID: 14363 |

Maes ME, Colombo G, Schoot Uiterkamp FE, et al. Mitochondrial network adaptations of microglia reveal sex-specific stress response after injury and UCP2 knockout. iScience. 2023;26(10). doi:10.1016/j.isci.2023.107780

2023 | Preprint | IST-REx-ID: 14591 |

Gnyliukh N, Johnson AJ, Nagel M-K, et al. Role of dynamin-related proteins 2 and SH3P2 in clathrin-mediated endocytosis in plants. bioRxiv. doi:10.1101/2023.10.09.561523

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2023 | Thesis | IST-REx-ID: 14280

Radler P. Spatiotemporal signaling during assembly of the bacterial divisome. 2023. doi:10.15479/at:ista:14280

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2023 | Journal Article | IST-REx-ID: 13188 |

Hafner C, Bickel B. The design space of Kirchhoff rods. ACM Transactions on Graphics. 2023;42(5). doi:10.1145/3606033

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2023 | Journal Article | IST-REx-ID: 14361 |

Riedl M, Mayer ID, Merrin J, Sixt MK, Hof B. Synchronization in collectively moving inanimate and living active matter. Nature Communications. 2023;14. doi:10.1038/s41467-023-41432-1

2023 | Thesis | IST-REx-ID: 14323

Kuzmicz-Kowalska K. Regulation of neural progenitor survival by Shh and BMP in the developing spinal cord. 2023. doi:10.15479/at:ista:14323

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2023 | Journal Article | IST-REx-ID: 14341

Scarselli D, Lopez Alonso JM, Varshney A, Hof B. Turbulence suppression by cardiac-cycle-inspired driving of pipe flow. Nature. 2023;621(7977):71-74. doi:10.1038/s41586-023-06399-5

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2023 | Journal Article | IST-REx-ID: 14257 |

Michalska JM, Lyudchik J, Velicky P, et al. Imaging brain tissue architecture across millimeter to nanometer scales. Nature Biotechnology. 2023. doi:10.1038/s41587-023-01911-8

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2023 | Journal Article | IST-REx-ID: 14255 |

Koch J, Xin Q, Obr M, et al. The phenuivirus Toscana virus makes an atypical use of vacuolar acidity to enter host cells. PLoS Pathogens. 2023;19(8). doi:10.1371/journal.ppat.1011562

2023 | Thesis | IST-REx-ID: 13984

Franschitz A. Individual and social immunity against viral infections in ants. 2023. doi:10.15479/at:ista:13984

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2023 | Journal Article | IST-REx-ID: 12696 |

Metzler S, Kirchner J, Grasse AV, Cremer S. Trade-offs between immunity and competitive ability in fighting ant males. BMC Ecology and Evolution. 2023;23. doi:10.1186/s12862-023-02137-7

2023 | Journal Article | IST-REx-ID: 14040 |

Zhao Z, Vercellino I, Knoppová J, et al. The Ycf48 accessory factor occupies the site of the oxygen-evolving manganese cluster during photosystem II biogenesis. Nature Communications. 2023;14. doi:10.1038/s41467-023-40388-6

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2023 | Research Data | IST-REx-ID: 13126 |

Danzl JG. Research data for the publication “Imaging brain tissue architecture across millimeter to nanometer scales.” 2023. doi:10.15479/AT:ISTA:13126

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2023 | Journal Article | IST-REx-ID: 14077 |

Puixeu Sala G, Macon A, Vicoso B. Sex-specific estimation of cis and trans regulation of gene expression in heads and gonads of Drosophila melanogaster. G3: Genes, Genomes, Genetics. 2023;13(8). doi:10.1093/g3journal/jkad121

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2023 | Journal Article | IST-REx-ID: 14082

Higashi T, Stephenson RE, Schwayer C, et al. ZnUMBA - a live imaging method to detect local barrier breaches. Journal of Cell Science. 2023;136(15). doi:10.1242/jcs.260668

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2023 | Journal Article | IST-REx-ID: 14240 |

Jeschke S, Wojtan C. Generalizing shallow water simulations with dispersive surface waves. ACM Transactions on Graphics. 2023;42(4). doi:10.1145/3592098

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2023 | Journal Article | IST-REx-ID: 13267 |

Velicky P, Miguel Villalba E, Michalska JM, et al. Dense 4D nanoscale reconstruction of living brain tissue. Nature Methods. 2023;20:1256-1265. doi:10.1038/s41592-023-01936-6

2023 | Conference Abstract | IST-REx-ID: 14748

Chen Y-L, Ly M, Wojtan C. Unified treatment of contact, friction and shock-propagation in rigid body animation. In: Proceedings of the ACM SIGGRAPH/Eurographics Symposium on Computer Animation. Association for Computing Machinery; 2023. doi:10.1145/3606037.3606836

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2023 | Conference Paper | IST-REx-ID: 14461 |

Markov I, Vladu A, Guo Q, Alistarh D-A. Quantized distributed training of large models with convergence guarantees. In: Proceedings of the 40th International Conference on Machine Learning. Vol 202. ML Research Press; 2023:24020-24044.

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2023 | Conference Paper | IST-REx-ID: 14458 |

Frantar E, Alistarh D-A. SparseGPT: Massive language models can be accurately pruned in one-shot. In: Proceedings of the 40th International Conference on Machine Learning. Vol 202. ML Research Press; 2023:10323-10337.

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2023 | Journal Article | IST-REx-ID: 13049 |

Freire M, Bhargava M, Schreck C, Hugron P-A, Bickel B, Lefebvre S. PCBend: Light up your 3D shapes with foldable circuit boards. Transactions on Graphics. 2023;42(4). doi:10.1145/3592411

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2023 | Research Data | IST-REx-ID: 13116 |

Dunajova Z, Prats Mateu B, Radler P, et al. Chiral and nematic phases of flexible active filaments. 2023. doi:10.15479/AT:ISTA:13116

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2023 | Journal Article | IST-REx-ID: 12984 |

Piovarci M, Chapiro A, Bickel B. Skin-Screen: A computational fabrication framework for color tattoos. Transactions on Graphics. 2023;42(4). doi:10.1145/3592432

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2023 | Journal Article | IST-REx-ID: 14434

He R, Yang L, Zhang Y, et al. A 3d‐4d‐5d high entropy alloy as a bifunctional oxygen catalyst for robust aqueous zinc–air batteries. Advanced Materials. 2023. doi:10.1002/adma.202303719

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2023 | Thesis | IST-REx-ID: 13286 |

Valentini M. Mesoscopic phenomena in hybrid semiconductor-superconductor nanodevices : From full-shell nanowires to two-dimensional hole gas in germanium. 2023. doi:10.15479/at:ista:13286

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2023 | Journal Article | IST-REx-ID: 13968 |

Hasler R, Steger-Polt MH, Reiner-Rozman C, et al. Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing. Frontiers in Physics. 2023;11. doi:10.3389/fphy.2023.1202132

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2023 | Journal Article | IST-REx-ID: 13227 |

Hassani F, Peruzzo M, Kapoor L, Trioni A, Zemlicka M, Fink JM. Inductively shunted transmons exhibit noise insensitive plasmon states and a fluxon decay exceeding 3 hours. Nature Communications. 2023;14. doi:10.1038/s41467-023-39656-2

2023 | Journal Article | IST-REx-ID: 13212 |

Chen H, Li L, Zou M, Qi L, Friml J. Distinct functions of TIR1 and AFB1 receptors in auxin signalling. Molecular Plant. 2023;16(7):1117-1119. doi:10.1016/j.molp.2023.06.007

2023 | Journal Article | IST-REx-ID: 13096 |

Degen M, Santos JC, Pluhackova K, et al. Structural basis of NINJ1-mediated plasma membrane rupture in cell death. Nature. 2023;618:1065-1071. doi:10.1038/s41586-023-05991-z

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2023 | Preprint | IST-REx-ID: 13312 |

Valentini M, Sagi O, Baghumyan L, et al. Radio frequency driven superconducting diode and parity conserving Cooper pair transport in a two-dimensional germanium hole gas. arXiv. doi:10.48550/arXiv.2306.07109

[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv

2023 | Journal Article | IST-REx-ID: 13264 |

Phan DT, Falthansl-Scheinecker P, Mishra U, et al. Gate-tunable superconductor-semiconductor parametric amplifier. Physical Review Applied. 2023;19(6). doi:10.1103/PhysRevApplied.19.064032

2023 | Journal Article | IST-REx-ID: 13202 |

Eguchi K, Le Monnier E, Shigemoto R. Nanoscale phosphoinositide distribution on cell membranes of mouse cerebellar neurons. The Journal of Neuroscience. 2023;43(23):4197-4216. doi:10.1523/JNEUROSCI.1514-22.2023

2023 | Journal Article | IST-REx-ID: 13127 |

Casillas Perez BE, Bodova K, Grasse AV, Tkačik G, Cremer S. Dynamic pathogen detection and social feedback shape collective hygiene in ants. Nature Communications. 2023;14. doi:10.1038/s41467-023-38947-y

2023 | Thesis | IST-REx-ID: 13107 |

Knaus L. The metabolism of the developing brain : How large neutral amino acids modulate perinatal neuronal excitability and survival. 2023. doi:10.15479/at:ista:13107

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2023 | Journal Article | IST-REx-ID: 13117 |

Redchenko E, Poshakinskiy AV, Sett R, Zemlicka M, Poddubny AN, Fink JM. Tunable directional photon scattering from a pair of superconducting qubits. Nature Communications. 2023;14. doi:10.1038/s41467-023-38761-6

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2023 | Thesis | IST-REx-ID: 13074 |

Peste E-A. Efficiency and generalization of sparse neural networks. 2023. doi:10.15479/at:ista:13074

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2023 | Thesis | IST-REx-ID: 13081

Bocanegra L. Epithelial dynamics during mouse neural tube development. 2023. doi:10.15479/at:ista:13081

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2023 | Research Data | IST-REx-ID: 12817 |

Danzl JG. Research data for the publication “Dense 4D nanoscale reconstruction of living brain tissue.” 2023. doi:10.15479/AT:ISTA:12817

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2023 | Research Data | IST-REx-ID: 12945 |

Cremer S. Data from: “Dynamic pathogen detection and social feedback shape collective hygiene in ants” . 2023. doi:10.15479/AT:ISTA:12945

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2023 | Thesis | IST-REx-ID: 12891

Schauer A. Mesendoderm formation in zebrafish gastrulation: The role of extraembryonic tissues. 2023. doi:10.15479/at:ista:12891

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2023 | Thesis | IST-REx-ID: 13175 |

Sahu R. Cavity quantum electrooptics. 2023. doi:10.15479/at:ista:13175

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2023 | Thesis | IST-REx-ID: 12900

Sahu R. Cavity quantum electrooptics. 2023. doi:10.15479/at:ista:12900

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2023 | Thesis | IST-REx-ID: 12897 |

Hafner C. Inverse shape design with parametric representations: Kirchhoff Rods and parametric surface models. 2023. doi:10.15479/at:ista:12897

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2023 | Conference Paper | IST-REx-ID: 13053 |

Peste E-A, Vladu A, Kurtic E, Lampert C, Alistarh D-A. CrAM: A Compression-Aware Minimizer. In: 11th International Conference on Learning Representations .

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2023 | Thesis | IST-REx-ID: 12885 |

Calcabrini M. Nanoparticle-based semiconductor solids: From synthesis to consolidation. 2023. doi:10.15479/at:ista:12885

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2023 | Book Chapter | IST-REx-ID: 13052

Leithner AF, Merrin J, Sixt MK. En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses. In: Baldari C, Dustin M, eds. The Immune Synapse. Vol 2654. MIMB. New York, NY: Springer Nature; 2023:137-147. doi:10.1007/978-1-0716-3135-5_9

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2023 | Journal Article | IST-REx-ID: 12802 |

Knaus L, Basilico B, Malzl D, et al. Large neutral amino acid levels tune perinatal neuronal excitability and survival. Cell. 2023;186(9):1950-1967.e25. doi:10.1016/j.cell.2023.02.037

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2023 | Thesis | IST-REx-ID: 12826 |

Pokusaeva V. Neural control of optic flow-based navigation in Drosophila melanogaster. 2023. doi:10.15479/at:ista:12826

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2023 | Journal Article | IST-REx-ID: 12830 |

Huljev K, Shamipour S, Nunes Pinheiro DC, et al. A hydraulic feedback loop between mesendoderm cell migration and interstitial fluid relocalization promotes embryonic axis formation in zebrafish. Developmental Cell. 2023;58(7):582-596.e7. doi:10.1016/j.devcel.2023.02.016

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2023 | Thesis | IST-REx-ID: 12809 |

Alcarva C. Plasticity in the cerebellum: What molecular mechanisms are behind physiological learning. 2023. doi:10.15479/at:ista:12809

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2023 | Journal Article | IST-REx-ID: 12832

He R, Yang L, Zhang Y, et al. A CrMnFeCoNi high entropy alloy boosting oxygen evolution/reduction reactions and zinc-air battery performance. Energy Storage Materials. 2023;58(4):287-298. doi:10.1016/j.ensm.2023.03.022

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2023 | Journal Article | IST-REx-ID: 12349 |

Gupta D, Mlynarski WF, Sumser AL, Symonova O, Svaton J, Jösch MA. Panoramic visual statistics shape retina-wide organization of receptive fields. Nature Neuroscience. 2023;26:606-614. doi:10.1038/s41593-023-01280-0

2023 | Thesis | IST-REx-ID: 12726

Riedl M. Synchronization in collectively moving active matter. 2023. doi:10.15479/at:ista:12726

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2023 | Thesis | IST-REx-ID: 12781 |

Kravchuk V. Structural and mechanistic study of bacterial complex I and its cyanobacterial ortholog. 2023. doi:10.15479/at:ista:12781

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2023 | Journal Article | IST-REx-ID: 12749

Cikes D, Elsayad K, Sezgin E, Koitai E, Ferenc T, Orthofer M, Yarwood R, Heinz LX, Sedlyarov V, Darwish-Miranda N, Taylor A, Grapentine S, al-Murshedi F, Abot A, Weidinger A, Kutchukian C, Sanchez C, Cronin SJF, Novatchkova M, Kavirayani A, Schuetz T, Haubner B, Haas L, Hagelkruys A, Jackowski S, Kozlov A, Jacquemond V, Knauf C, Superti-Furga G, Rullman E, Gustafsson T, McDermot J, Lowe M, Radak Z, Chamberlain JS, Bakovic M, Banka S, Penninger JM. 2023. PCYT2-regulated lipid biosynthesis is critical to muscle health and ageing. Nature Metabolism.

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2023 | Thesis | IST-REx-ID: 12732 |

Brighi P. Ergodicity breaking in disordered and kinetically constrained quantum many-body systems. 2023. doi:10.15479/at:ista:12732

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2023 | Journal Article | IST-REx-ID: 12759 |

Rothman JS, Borges Merjane C, Holderith N, Jonas PM, Angus Silver R. Validation of a stereological method for estimating particle size and density from 2D projections with high accuracy. PLoS ONE. 2023;18(3 March). doi:10.1371/journal.pone.0277148

[Published Version] View | Files available | DOI | WoS

2023 | Thesis | IST-REx-ID: 12716 |

Burnett L. To flee, or not to flee? Using innate defensive behaviours to investigate rapid perceptual decision-making through subcortical circuits in mouse models of autism. 2023. doi:10.15479/at:ista:12716

[Published Version] View | Files available | DOI

2023 | Journal Article | IST-REx-ID: 12543 |

Stock M, Milutinovic B, Hönigsberger M, et al. Pathogen evasion of social immunity. Nature Ecology and Evolution. 2023;7:450-460. doi:10.1038/s41559-023-01981-6

2023 | Journal Article | IST-REx-ID: 12789 |

Mujica N, Waitukaitis SR. Accurate determination of the shapes of granular charge distributions. Physical Review E. 2023;107(3). doi:10.1103/PhysRevE.107.034901

[Published Version] View | Files available | DOI | WoS

2023 | Thesis | IST-REx-ID: 12491 |

Zens B. Ultrastructural characterization of natively preserved extracellular matrix by cryo-electron tomography. 2023. doi:10.15479/at:ista:12491

[Published Version] View | Files available | DOI

2023 | Research Data | IST-REx-ID: 12370 |

Gupta D, Sumser AL, Jösch MA. Research Data for: Panoramic visual statistics shape retina-wide organization of receptive fields. 2023. doi:10.15479/AT:ISTA:12370

[Published Version] View | Files available | DOI

2023 | Journal Article | IST-REx-ID: 12334 |

Fäßler F, Javoor M, Datler J, et al. ArpC5 isoforms regulate Arp2/3 complex–dependent protrusion through differential Ena/VASP positioning. Science Advances. 2023;9(3). doi:10.1126/sciadv.add6495

[Published Version] View | Files available | DOI | WoS

2023 | Thesis | IST-REx-ID: 12470 |

Michalska JM. A versatile toolbox for the comprehensive analysis of nervous tissue organization with light microscopy. 2023. doi:10.15479/at:ista:12470

[Published Version] View | Files available | DOI

2022 | Journal Article | IST-REx-ID: 12109 |

Pertl F, Sobarzo Ponce JCA, Shafeek LB, Cramer T, Waitukaitis SR. Quantifying nanoscale charge density features of contact-charged surfaces with an FEM/KPFM-hybrid approach. Physical Review Materials. 2022;6(12). doi:10.1103/PhysRevMaterials.6.125605

[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv

2022 | Journal Article | IST-REx-ID: 12572 |

Iofinova EB, Konstantinov NH, Lampert C. FLEA: Provably robust fair multisource learning from unreliable training data. fg. 2022.

[Published Version] View | Files available | Download Published Version (ext.)

2022 | Journal Article | IST-REx-ID: 12495 |

Iofinova EB, Konstantinov NH, Lampert C. FLEA: Provably robust fair multisource learning from unreliable training data. Transactions on Machine Learning Research. 2022.

[Published Version] View | Files available | Download Published Version (ext.) | arXiv

2022 | Journal Article | IST-REx-ID: 12117 |

Hübschmann V, Korkut M, Siegert S. Assessing human iPSC-derived microglia identity and function by immunostaining, phagocytosis, calcium activity, and inflammation assay. STAR Protocols. 2022;3(4). doi:10.1016/j.xpro.2022.101866

[Published Version] View | Files available | DOI

2022 | Journal Article | IST-REx-ID: 12118 |

Valentini M, Borovkov M, Prada E, et al. Majorana-like Coulomb spectroscopy in the absence of zero-bias peaks. Nature. 2022;612(7940):442-447. doi:10.1038/s41586-022-05382-w

2022 | Journal Article | IST-REx-ID: 12209 |

Nunes Pinheiro DC, Kardos R, Hannezo EB, Heisenberg C-PJ. Morphogen gradient orchestrates pattern-preserving tissue morphogenesis via motility-driven unjamming. Nature Physics. 2022;18(12):1482-1493. doi:10.1038/s41567-022-01787-6

[Published Version] View | Files available | DOI | WoS

2022 | Thesis | IST-REx-ID: 12378 |

Colombo G. MorphOMICs, a tool for mapping microglial morphology, reveals brain region- and sex-dependent phenotypes. 2022. doi:10.15479/at:ista:12378

[Published Version] View | Files available | DOI

2022 | Journal Article | IST-REx-ID: 12143 |

Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell. 82(21), 4064–4079.e13.

2022 | Journal Article | IST-REx-ID: 12142 |

Ojavee SE, Kutalik Z, Robinson MR. Liability-scale heritability estimation for biobank studies of low-prevalence disease. The American Journal of Human Genetics. 2022;109(11):2009-2017. doi:10.1016/j.ajhg.2022.09.011

[Published Version] View | Files available | DOI | WoS

2022 | Journal Article | IST-REx-ID: 12144 |

Qi L, Kwiatkowski M, Chen H, et al. Adenylate cyclase activity of TIR1/AFB auxin receptors in plants. Nature. 2022;611(7934):133-138. doi:10.1038/s41586-022-05369-7

2022 | Journal Article | IST-REx-ID: 11336 |

Amberg N, Pauler F, Streicher C, Hippenmeyer S. Tissue-wide genetic and cellular landscape shapes the execution of sequential PRC2 functions in neural stem cell lineage progression. Science Advances. 2022;8(44). doi:10.1126/sciadv.abq1263

[Published Version] View | Files available | DOI

2022 | Journal Article | IST-REx-ID: 12239 |

Johnson AJ, Kaufmann W, Sommer CM, et al. Three-dimensional visualization of planta clathrin-coated vesicles at ultrastructural resolution. Molecular Plant. 2022;15(10):1533-1542. doi:10.1016/j.molp.2022.09.003

2022 | Journal Article | IST-REx-ID: 12244 |

Colombo G, Cubero RJ, Kanari L, et al. A tool for mapping microglial morphology, morphOMICs, reveals brain-region and sex-dependent phenotypes. Nature Neuroscience. 2022;25(10):1379-1393. doi:10.1038/s41593-022-01167-6

2022 | Journal Article | IST-REx-ID: 12248 |

Elkrewi MN, Khauratovich U, Toups MA, et al. ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp. Genetics. 2022;222(2). doi:10.1093/genetics/iyac123

2022 | Thesis | IST-REx-ID: 12368 |

Arslan FN. Remodeling of E-cadherin-mediated contacts via cortical flows. 2022. doi:10.15479/at:ista:12153

[Published Version] View | Files available | DOI

2022 | Thesis | IST-REx-ID: 12366 |

Redchenko E. Controllable states of superconducting Qubit ensembles. 2022. doi:10.15479/at:ista:12132

[Published Version] View | Files available | DOI

2022 | Thesis | IST-REx-ID: 12358 |

Sperl G. Homogenizing yarn simulations: Large-scale mechanics, small-scale detail, and quantitative fitting. 2022. doi:10.15479/at:ista:12103

[Published Version] View | Files available | DOI

2022 | Journal Article | IST-REx-ID: 12138 |

Kravchuk V, Petrova O, Kampjut D, Wojciechowska-Bason A, Breese Z, Sazanov LA. A universal coupling mechanism of respiratory complex I. Nature. 2022;609(7928):808-814. doi:10.1038/s41586-022-05199-7

2022 | Journal Article | IST-REx-ID: 12288 |

Sumser AL, Jösch MA, Jonas PM, Ben Simon Y. Fast, high-throughput production of improved rabies viral vectors for specific, efficient and versatile transsynaptic retrograde labeling. eLife. 2022;11. doi:10.7554/elife.79848

2022 | Journal Article | IST-REx-ID: 12291 |

Friml J, Gallei MC, Gelová Z, Johnson AJ, Mazur E, Monzer A, Rodriguez Solovey L, Roosjen M, Verstraeten I, Živanović BD, Zou M, Fiedler L, Giannini C, Grones P, Hrtyan M, Kaufmann W, Kuhn A, Narasimhan M, Randuch M, Rýdza N, Takahashi K, Tan S, Teplova A, Kinoshita T, Weijers D, Rakusová H. 2022. ABP1–TMK auxin perception for global phosphorylation and auxin canalization. Nature. 609(7927), 575–581.

2022 | Journal Article | IST-REx-ID: 12262 |

Prattes M, Grishkovskaya I, Hodirnau V-V, et al. Visualizing maturation factor extraction from the nascent ribosome by the AAA-ATPase Drg1. Nature Structural & Molecular Biology. 2022;29(9):942-953. doi:10.1038/s41594-022-00832-5

2022 | Journal Article | IST-REx-ID: 12082 |

Artan M, Hartl M, Chen W, de Bono M. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Journal of Biological Chemistry. 2022;298(9). doi:10.1016/j.jbc.2022.102343

2022 | Journal Article | IST-REx-ID: 12261 |

Angermayr A, Pang TY, Chevereau G, Mitosch K, Lercher MJ, Bollenbach MT. Growth‐mediated negative feedback shapes quantitative antibiotic response. Molecular Systems Biology. 2022;18(9). doi:10.15252/msb.202110490

[Published Version] View | Files available | DOI | WoS

2022 | Journal Article | IST-REx-ID: 12065 |

Prehal C, Mondal S, Lovicar L, Freunberger SA. Exclusive solution discharge in Li-O₂ batteries? ACS Energy Letters. 2022;7(9):3112-3119. doi:10.1021/acsenergylett.2c01711

[Published Version] View | Files available | DOI | WoS

2022 | Journal Article | IST-REx-ID: 11705 |

Chang C, Liu Y, Lee S, et al. Surface functionalization of surfactant-free particles: A strategy to tailor the properties of nanocomposites for enhanced thermoelectric performance. Angewandte Chemie - International Edition. 2022;61(35). doi:10.1002/anie.202207002

[Published Version] View | Files available | DOI | WoS

2022 | Thesis | IST-REx-ID: 11945 |

Schulz R. Chimeric G protein-coupled receptors mimic distinct signaling pathways and modulate microglia function. 2022. doi:10.15479/at:ista:11945

[Published Version] View | Files available | DOI

2022 | Thesis | IST-REx-ID: 11879 |

Artner C. Modulation of auxin transport via ZF proteins adjust plant response to high ambient temperature. 2022. doi:10.15479/at:ista:11879

[Published Version] View | Files available | DOI

2022 | Journal Article | IST-REx-ID: 11951 |

Ben Simon Y, Käfer K, Velicky P, Csicsvari JL, Danzl JG, Jonas PM. A direct excitatory projection from entorhinal layer 6b neurons to the hippocampus contributes to spatial coding and memory. Nature Communications. 2022;13. doi:10.1038/s41467-022-32559-8

[Published Version] View | Files available | DOI | WoS

2022 | Journal Article | IST-REx-ID: 11995 |

Schulz R, Korkut M, Venturino A, Colombo G, Siegert S. Chimeric GPCRs mimic distinct signaling pathways and modulate microglia responses. Nature Communications. 2022;13. doi:10.1038/s41467-022-32390-1

2022 | Journal Article | IST-REx-ID: 12174 |

Guerrini R, Mei D, Szigeti MK, Pepe S, Koenig MK, Von Allmen G, Cho MT, McDonald K, Baker J, Bhambhani V, Powis Z, Rodan L, Nabbout R, Barcia G, Rosenfeld JA, Bacino CA, Mignot C, Power LH, Harris CJ, Marjanovic D, Møller RS, Hammer TB, Keski Filppula R, Vieira P, Hildebrandt C, Sacharow S, Maragliano L, Benfenati F, Lachlan K, Benneche A, Petit F, de Sainte Agathe JM, Hallinan B, Si Y, Wentzensen IM, Zou F, Narayanan V, Matsumoto N, Boncristiano A, la Marca G, Kato M, Anderson K, Barba C, Sturiale L, Garozzo D, Bei R, Masuelli L, Conti V, Novarino G, Fassio A. 2022. Phenotypic and genetic spectrum of ATP6V1A encephalopathy: A disorder of lysosomal homeostasis. Brain. 145(8), 2687–2703.

[Published Version] View | DOI | Download Published Version (ext.) | WoS

2022 | Journal Article | IST-REx-ID: 11843 |

Tomasek K, Leithner AF, Glatzová I, Lukesch MS, Guet CC, Sixt MK. Type 1 piliated uropathogenic Escherichia coli hijack the host immune response by binding to CD14. eLife. 2022;11. doi:10.7554/eLife.78995

[Published Version] View | Files available | DOI | WoS

2022 | Journal Article | IST-REx-ID: 11734 |

Abualia R, Ötvös K, Novák O, et al. Molecular framework integrating nitrate sensing in root and auxin-guided shoot adaptive responses. Proceedings of the National Academy of Sciences of the United States of America. 2022;119(31). doi:10.1073/pnas.2122460119

2022 | Journal Article | IST-REx-ID: 11736 |

Sperl G, Sánchez-Banderas RM, Li M, Wojtan C, Otaduy MA. Estimation of yarn-level simulation models for production fabrics. ACM Transactions on Graphics. 2022;41(4). doi:10.1145/3528223.3530167

[Published Version] View | Files available | DOI | Download Published Version (ext.) | WoS

2022 | Journal Article | IST-REx-ID: 11478 |

Bartalska K, Hübschmann V, Korkut M, et al. A systematic characterization of microglia-like cell occurrence during retinal organoid differentiation. iScience. 2022;25(7). doi:10.1016/j.isci.2022.104580

[Published Version] View | Files available | DOI | WoS

2022 | Journal Article | IST-REx-ID: 9794 |

Assen FP, Abe J, Hons M, et al. Multitier mechanics control stromal adaptations in swelling lymph nodes. Nature Immunology. 2022;23:1246-1255. doi:10.1038/s41590-022-01257-4

[Published Version] View | Files available | DOI | WoS

2022 | Journal Article | IST-REx-ID: 10791 |

Hansen AH, Pauler F, Riedl M, et al. Tissue-wide effects override cell-intrinsic gene function in radial neuron migration. Oxford Open Neuroscience. 2022;1(1). doi:10.1093/oons/kvac009

[Published Version] View | Files available | DOI

2022 | Thesis | IST-REx-ID: 11473 |

Mysliwy K. Polarons in Bose gases and polar crystals: Some rigorous energy estimates. 2022. doi:10.15479/at:ista:11473

[Published Version] View | Files available | DOI

2022 | Journal Article | IST-REx-ID: 11411 |

Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. Effects of fine-scale population structure on the distribution of heterozygosity in a long-term study of Antirrhinum majus. Genetics. 2022;221(3). doi:10.1093/genetics/iyac083

2022 | Journal Article | IST-REx-ID: 11470 |

Brighi P, Michailidis AA, Abanin DA, Serbyn M. Propagation of many-body localization in an Anderson insulator. Physical Review B. 2022;105(22). doi:10.1103/physrevb.105.l220203

2022 | Journal Article | IST-REx-ID: 11469 |

Brighi P, Michailidis A, Kirova K, Abanin DA, Serbyn M. Localization of a mobile impurity interacting with an Anderson insulator. Physical Review B. 2022;105(22). doi:10.1103/physrevb.105.224208

2022 | Journal Article | IST-REx-ID: 10841 |

Dahhan D, Reynolds G, Cárdenas J, et al. Proteomic characterization of isolated Arabidopsis clathrin-coated vesicles reveals evolutionarily conserved and plant-specific components. Plant Cell. 2022;34(6):2150-2173. doi:10.1093/plcell/koac071

2022 | Journal Article | IST-REx-ID: 11155 |

Obr M, Hagen WJH, Dick RA, Yu L, Kotecha A, Schur FK. Exploring high-resolution cryo-ET and subtomogram averaging capabilities of contemporary DEDs. Journal of Structural Biology. 2022;214(2). doi:10.1016/j.jsb.2022.107852

2022 | Thesis | IST-REx-ID: 11393 |

Jevtic M. Contextual fear learning induced changes in AMPA receptor subtypes along the proximodistal axis in dorsal hippocampus. 2022. doi:10.15479/at:ista:11393

[Published Version] View | Files available | DOI

2022 | Journal Article | IST-REx-ID: 11373 |

Radler P, Baranova NS, Dos Santos Caldas PR, et al. In vitro reconstitution of Escherichia coli divisome activation. Nature Communications. 2022;13. doi:10.1038/s41467-022-30301-y

[Published Version] View | Files available | DOI | WoS

2022 | Journal Article | IST-REx-ID: 11341 |

Lukacisin M, Espinosa-Cantú A, Bollenbach MT. Intron-mediated induction of phenotypic heterogeneity. Nature. 2022;605:113-118. doi:10.1038/s41586-022-04633-0

2022 | Journal Article | IST-REx-ID: 11448 |

Gonzalez Somermeyer L, Fleiss A, Mishin AS, et al. Heterogeneity of the GFP fitness landscape and data-driven protein design. eLife. 2022;11. doi:10.7554/elife.75842

[Published Version] View | Files available | DOI | WoS

2022 | Journal Article | IST-REx-ID: 11432 |

Schreck C, Wojtan C. Coupling 3D liquid simulation with 2D wave propagation for large scale water surface animation using the equivalent sources method. Computer Graphics Forum. 2022;41(2):343-353. doi:10.1111/cgf.14478

[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS

2022 | Journal Article | IST-REx-ID: 10922 |

Liu Z, Hu J, Xu H, et al. Worst-case rigidity analysis and optimization for assemblies with mechanical joints. Computer Graphics Forum. 2022;41(2):507-519. doi:10.1111/cgf.14490

[Submitted Version] View | Files available | DOI | WoS

2022 | Journal Article | IST-REx-ID: 10713 |

Akhmanova M, Emtenani S, Krueger D, et al. Cell division in tissues enables macrophage infiltration. Science. 2022;376(6591):394-396. doi:10.1126/science.abj0425

2022 | Thesis | IST-REx-ID: 11196 |

Kim O. Nanoarchitecture of hippocampal mossy fiber-CA3 pyramidal neuron synapses. 2022. doi:10.15479/at:ista:11196

[Published Version] View | Files available | DOI

2022 | Thesis | IST-REx-ID: 11193 |

Wachner S. Transcriptional regulation by Dfos and BMP-signaling support tissue invasion of Drosophila immune cells. 2022. doi:10.15479/at:ista:11193

[Published Version] View | Files available | DOI

2022 | Thesis | IST-REx-ID: 11128 |

Matejovicova L. Genetic basis of flower colour as a model for adaptive evolution. 2022. doi:10.15479/at:ista:11128

[Published Version] View | Files available | DOI

2022 | Research Data | IST-REx-ID: 10934 |

Radler P. In vitro reconstitution of Escherichia coli divisome activation. 2022. doi:10.15479/AT:ISTA:10934

[Submitted Version] View | Files available | DOI

2022 | Journal Article | IST-REx-ID: 11160 |

Villa CE, Cheroni C, Dotter C, et al. CHD8 haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories. Cell Reports. 2022;39(1). doi:10.1016/j.celrep.2022.110615

2022 | Journal Article | IST-REx-ID: 10920 |

Jirovec D, Mutter PM, Hofmann AC, et al. Dynamics of hole singlet-triplet qubits with large g-factor differences. Physical Review Letters. 2022;128(12). doi:10.1103/PhysRevLett.128.126803

[Published Version] View | Files available | DOI | WoS | arXiv

2022 | Journal Article | IST-REx-ID: 10918 |

Emtenani S, Martin ET, György A, et al. Macrophage mitochondrial bioenergetics and tissue invasion are boosted by an Atossa-Porthos axis in Drosophila. The Embo Journal. 2022;41. doi:10.15252/embj.2021109049

[Published Version] View | Files available | DOI | WoS

2022 | Journal Article | IST-REx-ID: 10924 |

Sahu R, Hease WJ, Rueda Sanchez AR, Arnold GM, Qiu L, Fink JM. Quantum-enabled operation of a microwave-optical interface. Nature Communications. 2022;13. doi:10.1038/s41467-022-28924-2

[Published Version] View | Files available | DOI | WoS | arXiv

2022 | Journal Article | IST-REx-ID: 10851 |

Phan DT, Senior JL, Ghazaryan A, et al. Detecting induced p±ip pairing at the Al-InAs interface with a quantum microwave circuit. Physical Review Letters. 2022;128(10). doi:10.1103/physrevlett.128.107701

2022 | Journal Article | IST-REx-ID: 10639 |

Windhaber S, Xin Q, Uckeley ZM, et al. The Orthobunyavirus Germiston enters host cells from late endosomes. Journal of Virology. 2022;96(5). doi:10.1128/jvi.02146-21

2022 | Journal Article | IST-REx-ID: 10826 |

Valperga G, de Bono M. Impairing one sensory modality enhances another by reconfiguring peptidergic signalling in Caenorhabditis elegans. eLife. 2022;11. doi:10.7554/eLife.68040

2022 | Journal Article | IST-REx-ID: 10766 |

Slovakova J, Sikora MK, Arslan FN, et al. Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion in zebrafish germ-layer progenitor cells. Proceedings of the National Academy of Sciences of the United States of America. 2022;119(8). doi:10.1073/pnas.2122030119

[Published Version] View | Files available | DOI | WoS

2022 | Journal Article | IST-REx-ID: 10712 |

Roblek M, Bicher J, van Gogh M, et al. The solute carrier MFSD1 decreases β1 integrin’s activation status and thus tumor metastasis. Frontiers in Oncology. 2022;12. doi:10.3389/fonc.2022.777634

[Published Version] View | Files available | DOI | WoS

2022 | Thesis | IST-REx-ID: 10727 |

Metzler S. Pathogen-mediated sexual selection and immunization in ant colonies. 2022. doi:10.15479/AT:ISTA:10727

[Published Version] View | Files available | DOI

2022 | Journal Article | IST-REx-ID: 10703 |

Gaertner F, Reis-Rodrigues P, de Vries I, et al. WASp triggers mechanosensitive actin patches to facilitate immune cell migration in dense tissues. Developmental Cell. 2022;57(1):47-62.e9. doi:10.1016/j.devcel.2021.11.024

2022 | Journal Article | IST-REx-ID: 10709 |

Belyaeva V, Wachner S, György A, et al. Fos regulates macrophage infiltration against surrounding tissue resistance by a cortical actin-based mechanism in Drosophila. PLoS Biology. 2022;20(1):e3001494. doi:10.1371/journal.pbio.3001494

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2022 | Journal Article | IST-REx-ID: 10614 |

2022 | Journal Article | IST-REx-ID: 10654 |

Klotz L, Lemoult GM, Avila K, Hof B. Phase transition to turbulence in spatially extended shear flows. Physical Review Letters. 2022;128(1). doi:10.1103/PhysRevLett.128.014502

2022 | Journal Article | IST-REx-ID: 10284 |

Casillas Perez BE, Pull C, Naiser F, Naderlinger E, Matas J, Cremer S. Early queen infection shapes developmental dynamics and induces long-term disease protection in incipient ant colonies. Ecology Letters. 2022;25(1):89-100. doi:10.1111/ele.13907

2021 | Journal Article | IST-REx-ID: 10123 |

Liu Y, Calcabrini M, Yu Y, et al. The importance of surface adsorbates in solution‐processed thermoelectric materials: The case of SnSe. Advanced Materials. 2021;33(52). doi:10.1002/adma.202106858

2021 | Journal Article | IST-REx-ID: 10606 |

Godard BG, Dumollard R, Heisenberg C-PJ, Mcdougall A. Combined effect of cell geometry and polarity domains determines the orientation of unequal division. eLife. 2021;10. doi:10.7554/eLife.75639

[Published Version] View | Files available | DOI | WoS

2021 | Journal Article | IST-REx-ID: 10565 |

Venturino A, Siegert S. Minimally invasive protocols and quantification for microglia-mediated perineuronal net disassembly in mouse brain. STAR Protocols. 2021;2(4). doi:10.1016/j.xpro.2021.101012

[Published Version] View | Files available | DOI

2021 | Journal Article | IST-REx-ID: 10816 |

Guzmán J, Schlögl A, Espinoza Martinez C, Zhang X, Suter B, Jonas PM. How connectivity rules and synaptic properties shape the efficacy of pattern separation in the entorhinal cortex–dentate gyrus–CA3 network. Nature Computational Science. 2021;1(12):830-842. doi:10.1038/s43588-021-00157-1

[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.)

2021 | Journal Article | IST-REx-ID: 9887 |

Johnson AJ, Dahhan DA, Gnyliukh N, et al. The TPLATE complex mediates membrane bending during plant clathrin-mediated endocytosis. Proceedings of the National Academy of Sciences. 2021;118(51). doi:10.1073/pnas.2113046118

2021 | Journal Article | IST-REx-ID: 10655 |

Maes ME, Wögenstein GM, Colombo G, Casado Polanco R, Siegert S. Optimizing AAV2/6 microglial targeting identified enhanced efficiency in the photoreceptor degenerative environment. Molecular Therapy - Methods and Clinical Development. 2021;23:210-224. doi:10.1016/j.omtm.2021.09.006

[Published Version] View | Files available | DOI | WoS

2021 | Conference Paper | IST-REx-ID: 11458 |

Peste E-A, Iofinova EB, Vladu A, Alistarh D-A. AC/DC: Alternating Compressed/DeCompressed training of deep neural networks. In: 35th Conference on Neural Information Processing Systems. Vol 34. Curran Associates; 2021:8557-8570.

[Published Version] View | Files available | Download Published Version (ext.) | arXiv

2021 | Journal Article | IST-REx-ID: 10535 |

Bodova K, Szep E, Barton NH. Dynamic maximum entropy provides accurate approximation of structured population dynamics. PLoS Computational Biology. 2021;17(12). doi:10.1371/journal.pcbi.1009661

2021 | Journal Article | IST-REx-ID: 9928 |

Peruzzo M, Hassani F, Szep G, et al. Geometric superinductance qubits: Controlling phase delocalization across a single Josephson junction. PRX Quantum. 2021;2(4):040341. doi:10.1103/PRXQuantum.2.040341

[Published Version] View | Files available | DOI | WoS | arXiv

2021 | Thesis | IST-REx-ID: 10303 |

Abualia R. Role of hormones in nitrate regulated growth. 2021. doi:10.15479/at:ista:10303

[Published Version] View | Files available | DOI

2021 | Thesis | IST-REx-ID: 10307 |

Tomasek K. Pathogenic Escherichia coli hijack the host immune response. 2021. doi:10.15479/at:ista:10307

[Published Version] View | Files available | DOI

2021 | Journal Article | IST-REx-ID: 10223 |

Li L, Verstraeten I, Roosjen M, et al. Cell surface and intracellular auxin signalling for H⁺ fluxes in root growth. Nature. 2021;599(7884):273-277. doi:10.1038/s41586-021-04037-6

2021 | Journal Article | IST-REx-ID: 10321 |

Amberg N, Hippenmeyer S. Genetic mosaic dissection of candidate genes in mice using mosaic analysis with double markers. STAR Protocols. 2021;2(4). doi:10.1016/j.xpro.2021.100939

[Published Version] View | Files available | DOI

2021 | Journal Article | IST-REx-ID: 10290 |

Dimchev GA, Amiri B, Fäßler F, Falcke M, Schur FK. Computational toolbox for ultrastructural quantitative analysis of filament networks in cryo-ET data. Journal of Structural Biology. 2021;213(4). doi:10.1016/j.jsb.2021.107808

[Published Version] View | Files available | DOI | WoS

2021 | Thesis | IST-REx-ID: 10199 |

Toman V. Improved verification techniques for concurrent systems. 2021. doi:10.15479/at:ista:10199

[Published Version] View | Files available | DOI

2021 | Book Chapter | IST-REx-ID: 10268

Hörmayer L, Friml J, Glanc M. Automated time-lapse imaging and manipulation of cell divisions in Arabidopsis roots by vertical-stage confocal microscopy. In: Plant Cell Division. Vol 2382. MIMB. Humana Press; 2021:105-114. doi:10.1007/978-1-0716-1744-1_6

View | DOI | PubMed | Europe PMC

2021 | Preprint | IST-REx-ID: 10316 |

Tomasek K, Leithner AF, Glatzová I, Lukesch MS, Guet CC, Sixt MK. Type 1 piliated uropathogenic Escherichia coli hijack the host immune response by binding to CD14. bioRxiv. doi:10.1101/2021.10.18.464770

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2021 | Journal Article | IST-REx-ID: 10146

Vercellino I, Sazanov LA. Structure and assembly of the mammalian mitochondrial supercomplex CIII₂CIV. Nature. 2021;598(7880):364-367. doi:10.1038/s41586-021-03927-z

2021 | Journal Article | IST-REx-ID: 9376 |

Zhang R, Auzinger T, Bickel B. Computational design of planar multistable compliant structures. ACM Transactions on Graphics. 2021;40(5). doi:10.1145/3453477

[Published Version] View | Files available | DOI | WoS

2021 | Thesis | IST-REx-ID: 10058 |

Jirovec D. Singlet-Triplet qubits and spin-orbit interaction in 2-dimensional Ge hole gases. 2021. doi:10.15479/at:ista:10058

[Published Version] View | Files available | DOI

2021 | Thesis | IST-REx-ID: 10030 |

Portinale L. Discrete-to-continuum limits of transport problems and gradient flows in the space of measures. 2021. doi:10.15479/at:ista:10030

[Published Version] View | Files available | DOI

2021 | Journal Article | IST-REx-ID: 10166 |

Huylmans AK, Macon A, Hontoria F, Vicoso B. Transitions to asexuality and evolution of gene expression in Artemia brine shrimp. Proceedings of the Royal Society B: Biological Sciences. 2021;288(1959). doi:10.1098/rspb.2021.1720

2021 | Journal Article | IST-REx-ID: 10073 |

Chang C, Ibáñez M. Enhanced thermoelectric performance by surface engineering in SnTe-PbS nanocomposites. Materials. 2021;14(18). doi:10.3390/ma14185416

2021 | Thesis | IST-REx-ID: 9992 |

Hörmayer L. Wound healing in the Arabidopsis root meristem. 2021. doi:10.15479/at:ista:9992

[Published Version] View | Files available | DOI

2021 | Preprint | IST-REx-ID: 10095 |

Li L, Verstraeten I, Roosjen M, et al. Cell surface and intracellular auxin signalling for H+-fluxes in root growth. Research Square. doi:10.21203/rs.3.rs-266395/v3

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2021 | Thesis | IST-REx-ID: 9920 |

Peruzzo M. Geometric superinductors and their applications in circuit quantum electrodynamics. 2021. doi:10.15479/at:ista:9920

[Published Version] View | Files available | DOI

2021 | Journal Article | IST-REx-ID: 9818 |

Sperl G, Narain R, Wojtan C. Mechanics-aware deformation of yarn pattern geometry. ACM Transactions on Graphics. 2021;40(4). doi:10.1145/3450626.3459816

[Published Version] View | Files available | DOI | Download Published Version (ext.) | WoS

2021 | Journal Article | IST-REx-ID: 9907 |

Labajová N, Baranova NS, Jurásek M, Vácha R, Loose M, Barák I. Cardiolipin-containing lipid membranes attract the bacterial cell division protein diviva. International Journal of Molecular Sciences. 2021;22(15). doi:10.3390/ijms22158350

2021 | Journal Article | IST-REx-ID: 8909 |

Jirovec D, Hofmann AC, Ballabio A, et al. A singlet triplet hole spin qubit in planar Ge. Nature Materials. 2021;20(8):1106–1112. doi:10.1038/s41563-021-01022-2

2021 | Thesis | IST-REx-ID: 9728 |

Agrawal N. Transition to turbulence and drag reduction in particle-laden pipe flows. 2021. doi:10.15479/at:ista:9728

[Published Version] View | Files available | DOI

2021 | Preprint | IST-REx-ID: 10066 |

Severin B, Lennon DT, Camenzind LC, Vigneau F, Fedele F, Jirovec D, Ballabio A, Chrastina D, Isella G, Kruijf M de, Carballido MJ, Svab S, Kuhlmann AV, Braakman FR, Geyer S, Froning FNM, Moon H, Osborne MA, Sejdinovic D, Katsaros G, Zumbühl DM, Briggs GAD, Ares N. Cross-architecture tuning of silicon and SiGe-based quantum devices using machine learning. arXiv, 2107.12975.

[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv

2021 | Preprint | IST-REx-ID: 10029 |

Phan DT, Senior JL, Ghazaryan A, et al. Breakdown of induced p±ip pairing in a superconductor-semiconductor hybrid. arXiv.

[Preprint] View | Files available | Download Preprint (ext.) | arXiv

2021 | Journal Article | IST-REx-ID: 9642 |

Venturino A, Schulz R, De Jesús-Cortés H, et al. Microglia enable mature perineuronal nets disassembly upon anesthetic ketamine exposure or 60-Hz light entrainment in the healthy brain. Cell Reports. 2021;36(1). doi:10.1016/j.celrep.2021.109313

2021 | Journal Article | IST-REx-ID: 8910 |

Valentini M, Peñaranda F, Hofmann AC, et al. Nontopological zero-bias peaks in full-shell nanowires induced by flux-tunable Andreev states. Science. 2021;373(6550). doi:10.1126/science.abf1513

2021 | Thesis | IST-REx-ID: 9623 |

Caballero Mancebo S. Fertilization-induced deformations are controlled by the actin cortex and a mitochondria-rich subcortical layer in ascidian oocytes. 2021. doi:10.15479/at:ista:9623

[Published Version] View | Files available | DOI

2021 | Journal Article | IST-REx-ID: 9603 |

Contreras X, Amberg N, Davaatseren A, et al. A genome-wide library of MADM mice for single-cell genetic mosaic analysis. Cell Reports. 2021;35(12). doi:10.1016/j.celrep.2021.109274

[Published Version] View | Files available | DOI | WoS

2021 | Journal Article | IST-REx-ID: 10167 |

Elkrewi MN, Moldovan MA, Picard MAL, Vicoso B. Schistosome W-Linked genes inform temporal dynamics of sex chromosome evolution and suggest candidate for sex determination. Molecular Biology and Evolution. 2021. doi:10.1093/molbev/msab178

2021 | Journal Article | IST-REx-ID: 9558 |

Yalniz G, Hof B, Budanur NB. Coarse graining the state space of a turbulent flow using periodic orbits. Physical Review Letters. 2021;126(24). doi:10.1103/PhysRevLett.126.244502

2021 | Journal Article | IST-REx-ID: 9540 |

Prattes M, Grishkovskaya I, Hodirnau V-V, et al. Structural basis for inhibition of the AAA-ATPase Drg1 by diazaborine. Nature Communications. 2021;12(1). doi:10.1038/s41467-021-23854-x

2021 | Journal Article | IST-REx-ID: 9449 |

Jirovec D, Hofmann AC, Ballabio A, et al. A singlet-triplet hole spin qubit in planar Ge. Nature Materials. 2021. doi:10.1038/s41563-021-01022-2

[Submitted Version] View | DOI | Download Submitted Version (ext.) | arXiv

2021 | Journal Article | IST-REx-ID: 9438 |

Vandael DH, Okamoto Y, Borges Merjane C, Vargas Barroso VM, Suter B, Jonas PM. Subcellular patch-clamp techniques for single-bouton stimulation and simultaneous pre- and postsynaptic recording at cortical synapses. Nature Protocols. 2021;16(6):2947–2967. doi:10.1038/s41596-021-00526-0

2021 | Thesis | IST-REx-ID: 9562 |

Kleindienst D. 2B or not 2B: Hippocampal asymmetries mediated by NMDA receptor subunit GluN2B C-terminus and high-throughput image analysis by Deep-Learning. 2021. doi:10.15479/at:ista:9562

[Published Version] View | Files available | DOI

2021 | Journal Article | IST-REx-ID: 9287 |

Narasimhan M, Gallei MC, Tan S, et al. Systematic analysis of specific and nonspecific auxin effects on endocytosis and trafficking. Plant Physiology. 2021;186(2):1122–1142. doi:10.1093/plphys/kiab134

2021 | Thesis | IST-REx-ID: 9418 |

Phuong M. Underspecification in deep learning. 2021. doi:10.15479/AT:ISTA:9418

[Published Version] View | Files available | DOI

2021 | Journal Article | IST-REx-ID: 9431 |

Obr M, Ricana CL, Nikulin N, et al. Structure of the mature Rous sarcoma virus lattice reveals a role for IP6 in the formation of the capsid hexamer. Nature Communications. 2021;12(1). doi:10.1038/s41467-021-23506-0

[Published Version] View | Files available | DOI | WoS

2021 | Journal Article | IST-REx-ID: 9429 |

Morandell J, Schwarz LA, Basilico B, et al. Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. Nature Communications. 2021;12(1). doi:10.1038/s41467-021-23123-x

[Published Version] View | Files available | DOI | WoS

2021 | Journal Article | IST-REx-ID: 9778 |

Vandael DH, Okamoto Y, Jonas PM. Transsynaptic modulation of presynaptic short-term plasticity in hippocampal mossy fiber synapses. Nature Communications. 2021;12(1). doi:10.1038/s41467-021-23153-5

[Published Version] View | Files available | DOI | WoS

2021 | Journal Article | IST-REx-ID: 10559 |

Aggarwal K, Hofmann AC, Jirovec D, et al. Enhancement of proximity-induced superconductivity in a planar Ge hole gas. Physical Review Research. 2021;3(2). doi:10.1103/physrevresearch.3.l022005

[Published Version] View | Files available | DOI | arXiv

2021 | Journal Article | IST-REx-ID: 9330 |

Schöpf CL, Ablinger C, Geisler SM, et al. Presynaptic α2δ subunits are key organizers of glutamatergic synapses. PNAS. 2021;118(14). doi:10.1073/pnas.1920827118

[Published Version] View | Files available | DOI | WoS

2021 | Journal Article | IST-REx-ID: 9301 |

Prehal C, Samojlov A, Nachtnebel M, et al. In situ small-angle X-ray scattering reveals solution phase discharge of Li–O2 batteries with weakly solvating electrolytes. Proceedings of the National Academy of Sciences. 2021;118(14). doi:10.1073/pnas.2021893118

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2021 | Journal Article | IST-REx-ID: 9316 |

Petridou N, Corominas-Murtra B, Heisenberg C-PJ, Hannezo EB. Rigidity percolation uncovers a structural basis for embryonic tissue phase transitions. Cell. 2021;184(7):1914-1928.e19. doi:10.1016/j.cell.2021.02.017

2021 | Journal Article | IST-REx-ID: 9205 |

Kampjut D, Steiner J, Sazanov LA. Cryo-EM grid optimization for membrane proteins. iScience. 2021;24(3). doi:10.1016/j.isci.2021.102139

2021 | Journal Article | IST-REx-ID: 9250 |

Petit YK, Mourad E, Prehal C, et al. Mechanism of mediated alkali peroxide oxidation and triplet versus singlet oxygen formation. Nature Chemistry. 2021;13(5):465-471. doi:10.1038/s41557-021-00643-z

2021 | Journal Article | IST-REx-ID: 9290 |

Glanc M, Van Gelderen K, Hörmayer L, et al. AGC kinases and MAB4/MEL proteins maintain PIN polarity by limiting lateral diffusion in plant cells. Current Biology. 2021;31(9):1918-1930. doi:10.1016/j.cub.2021.02.028

2021 | Journal Article | IST-REx-ID: 9329 |

Zhang X, Schlögl A, Vandael DH, Jonas PM. MOD: A novel machine-learning optimal-filtering method for accurate and efficient detection of subthreshold synaptic events in vivo. Journal of Neuroscience Methods. 2021;357(6). doi:10.1016/j.jneumeth.2021.109125

[Published Version] View | Files available | DOI | WoS

2021 | Book Chapter | IST-REx-ID: 9245

Xia P, Heisenberg C-PJ. Quantifying tissue tension in the granulosa layer after laser surgery. In: Dosch R, ed. Germline Development in the Zebrafish. Vol 2218. Humana; 2021:117-128. doi:10.1007/978-1-0716-0970-5_10

View | DOI | PubMed | Europe PMC

2021 | Preprint | IST-REx-ID: 9238 |

Emtenani S, Martin ET, György A, et al. A genetic program boosts mitochondrial function to power macrophage tissue invasion. bioRxiv. doi:10.1101/2021.02.18.431643

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2021 | Journal Article | IST-REx-ID: 9168 |

Fraisse C, Sachdeva H. The rates of introgression and barriers to genetic exchange between hybridizing species: Sex chromosomes vs autosomes. Genetics. 2021;217(2). doi:10.1093/genetics/iyaa025

[Published Version] View | DOI | Download Published Version (ext.) | WoS

2021 | Journal Article | IST-REx-ID: 9010 |

Ötvös K, Marconi M, Vega A, et al. Modulation of plant root growth by nitrogen source-defined regulation of polar auxin transport. EMBO Journal. 2021;40(3). doi:10.15252/embj.2020106862

2021 | Journal Article | IST-REx-ID: 8931 |

Gelová Z, Gallei MC, Pernisová M, et al. Developmental roles of auxin binding protein 1 in Arabidopsis thaliana. Plant Science. 2021;303. doi:10.1016/j.plantsci.2020.110750

2021 | Journal Article | IST-REx-ID: 8988 |

Düllberg CF, Auer A, Canigova N, Loibl K, Loose M. In vitro reconstitution reveals phosphoinositides as cargo-release factors and activators of the ARF6 GAP ADAP1. PNAS. 2021;118(1). doi:10.1073/pnas.2010054118

2021 | Journal Article | IST-REx-ID: 8582 |

Li H, von Wangenheim D, Zhang X, et al. Cellular requirements for PIN polar cargo clustering in Arabidopsis thaliana. New Phytologist. 2021;229(1):351-369. doi:10.1111/nph.16887

[Published Version] View | Files available | DOI | WoS

2021 | Research Data | IST-REx-ID: 9389 |

Valentini M. Research data for “Non-topological zero bias peaks in full-shell nanowires induced by flux tunable Andreev states.” 2021. doi:10.15479/AT:ISTA:9389

[Published Version] View | Files available | DOI

2020 | Thesis | IST-REx-ID: 8983 |

Emtenani S. Metabolic regulation of Drosophila macrophage tissue invasion. 2020. doi:10.15479/AT:ISTA:8983

[Published Version] View | Files available | DOI

2020 | Journal Article | IST-REx-ID: 8971 |

Fäßler F, Dimchev GA, Hodirnau V-V, Wan W, Schur FK. Cryo-electron tomography structure of Arp2/3 complex in cells reveals new insights into the branch junction. Nature Communications. 2020;11. doi:10.1038/s41467-020-20286-x

[Published Version] View | Files available | DOI | WoS

2020 | Journal Article | IST-REx-ID: 8957

Godard BG, Dumollard R, Munro E, et al. Apical relaxation during mitotic rounding promotes tension-oriented cell division. Developmental Cell. 2020;55(6):695-706. doi:10.1016/j.devcel.2020.10.016

2020 | Journal Article | IST-REx-ID: 8978 |

Laukoter S, Amberg N, Pauler F, Hippenmeyer S. Generation and isolation of single cells from mouse brain with mosaic analysis with double markers-induced uniparental chromosome disomy. STAR Protocols. 2020;1(3). doi:10.1016/j.xpro.2020.100215

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2020 | Preprint | IST-REx-ID: 8831 |

Aggarwal K, Hofmann AC, Jirovec D, et al. Enhancement of proximity induced superconductivity in planar Germanium. arXiv.

[Submitted Version] View | Files available | arXiv

2020 | Journal Article | IST-REx-ID: 8943 |

Tan S, Di Donato M, Glanc M, et al. Non-steroidal anti-inflammatory drugs target TWISTED DWARF1-regulated actin dynamics and auxin transport-mediated plant development. Cell Reports. 2020;33(9). doi:10.1016/j.celrep.2020.108463

2020 | Journal Article | IST-REx-ID: 8586 |

Fäßler F, Zens B, Hauschild R, Schur FK. 3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy. Journal of Structural Biology. 2020;212(3). doi:10.1016/j.jsb.2020.107633

[Published Version] View | Files available | DOI | WoS

2020 | Journal Article | IST-REx-ID: 8562 |

Gavriil K, Guseinov R, Perez Rodriguez J, et al. Computational design of cold bent glass façades. ACM Transactions on Graphics. 2020;39(6). doi:10.1145/3414685.3417843

[Submitted Version] View | Files available | DOI | WoS | arXiv

2020 | Journal Article | IST-REx-ID: 9114 |

Hease WJ, Rueda Sanchez AR, Sahu R, et al. Bidirectional electro-optic wavelength conversion in the quantum ground state. PRX Quantum. 2020;1(2). doi:10.1103/prxquantum.1.020315

[Published Version] View | Files available | DOI | WoS

2020 | Research Data | IST-REx-ID: 8761 |

Guseinov R. Supplementary data for “Computational design of cold bent glass façades.” 2020. doi:10.15479/AT:ISTA:8761

[Published Version] View | Files available | DOI

2020 | Preprint | IST-REx-ID: 9750 |

Slovakova J, Sikora MK, Caballero Mancebo S, et al. Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion. bioRxiv. 2020. doi:10.1101/2020.11.20.391284

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2020 | Journal Article | IST-REx-ID: 8581

Pinke G, Zhou L, Sazanov LA. Cryo-EM structure of the entire mammalian F-type ATP synthase. Nature Structural and Molecular Biology. 2020;27(11):1077-1085. doi:10.1038/s41594-020-0503-8

2020 | Journal Article | IST-REx-ID: 8737 |

Kampjut D, Sazanov LA. The coupling mechanism of mammalian respiratory complex I. Science. 2020;370(6516). doi:10.1126/science.abc4209

2020 | Journal Article | IST-REx-ID: 8721 |

Hajny J, Prat T, Rydza N, et al. Receptor kinase module targets PIN-dependent auxin transport during canalization. Science. 2020;370(6516):550-557. doi:10.1126/science.aba3178

2020 | Journal Article | IST-REx-ID: 8755 |

Peruzzo M, Trioni A, Hassani F, Zemlicka M, Fink JM. Surpassing the resistance quantum with a geometric superinductor. Physical Review Applied. 2020;14(4). doi:10.1103/PhysRevApplied.14.044055

[Published Version] View | Files available | DOI | WoS | arXiv

2020 | Thesis | IST-REx-ID: 8657 |

Kavcic B. Perturbations of protein synthesis: from antibiotics to genetics and physiology. 2020. doi:10.15479/AT:ISTA:8657

[Published Version] View | Files available | DOI

2020 | Thesis | IST-REx-ID: 8620 |

Morandell J. Illuminating the role of Cul3 in autism spectrum disorder pathogenesis. 2020. doi:10.15479/AT:ISTA:8620

[Published Version] View | Files available | DOI

2020 | Thesis | IST-REx-ID: 8589 |

Han H. Novel insights into PIN polarity regulation during Arabidopsis development. 2020. doi:10.15479/AT:ISTA:8589

[Published Version] View | Files available | DOI

2020 | Journal Article | IST-REx-ID: 8162 |

Laukoter S, Pauler F, Beattie RJ, et al. Cell-type specificity of genomic imprinting in cerebral cortex. Neuron. 2020;107(6):1160-1179.e9. doi:10.1016/j.neuron.2020.06.031

[Published Version] View | Files available | DOI | WoS

2020 | Journal Article | IST-REx-ID: 8261 |

Zhang X, Schlögl A, Jonas PM. Selective routing of spatial information flow from input to output in hippocampal granule cells. Neuron. 2020;107(6):1212-1225. doi:10.1016/j.neuron.2020.07.006

2020 | Thesis | IST-REx-ID: 8366 |

Guseinov R. Computational design of curved thin shells: From glass façades to programmable matter. 2020. doi:10.15479/AT:ISTA:8366

[Published Version] View | Files available | DOI

2020 | Preprint | IST-REx-ID: 8557 |

Belyaeva V, Wachner S, Gridchyn I, et al. Cortical actin properties controlled by Drosophila Fos aid macrophage infiltration against surrounding tissue resistance. bioRxiv. doi:10.1101/2020.09.18.301481

[Preprint] View | Files available | DOI | Download Preprint (ext.)

2020 | Thesis | IST-REx-ID: 8386 |

Zhang R. Structure-aware computational design and its application to 3D printable volume scattering, mechanism, and multistability. 2020. doi:10.15479/AT:ISTA:8386

[Published Version] View | Files available | DOI

2020 | Thesis | IST-REx-ID: 8390 |

Royer A. Leveraging structure in Computer Vision tasks for flexible Deep Learning models. 2020. doi:10.15479/AT:ISTA:8390

[Published Version] View | Files available | DOI

2020 | Thesis | IST-REx-ID: 8358 |

Dos Santos Caldas PR. Organization and dynamics of treadmilling filaments in cytoskeletal networks of FtsZ and its crosslinkers. 2020. doi:10.15479/AT:ISTA:8358

[Published Version] View | Files available | DOI

2020 | Thesis | IST-REx-ID: 8353 |

Steiner J. Biochemical and structural investigation of the Mrp antiporter, an ancestor of complex I. 2020. doi:10.15479/AT:ISTA:8353

View | Files available | DOI

2020 | Thesis | IST-REx-ID: 8340 |

Kampjut D. Molecular mechanisms of mitochondrial redox-coupled proton pumping enzymes. 2020. doi:10.15479/AT:ISTA:8340

View | Files available | DOI

2020 | Thesis | IST-REx-ID: 8350 |

Shamipour S. Bulk actin dynamics drive phase segregation in zebrafish oocytes . 2020. doi:10.15479/AT:ISTA:8350

View | Files available | DOI

2020 | Journal Article | IST-REx-ID: 8529 |

Arnold GM, Wulf M, Barzanjeh S, et al. Converting microwave and telecom photons with a silicon photonic nanomechanical interface. Nature Communications. 2020;11. doi:10.1038/s41467-020-18269-z

[Published Version] View | Files available | DOI | WoS

2020 | Thesis | IST-REx-ID: 8341 |

Bezeljak U. In vitro reconstitution of a Rab activation switch. 2020. doi:10.15479/AT:ISTA:8341

[Published Version] View | Files available | DOI

2020 | Journal Article | IST-REx-ID: 15061 |

Pinotsis N, Zielinska K, Babuta M, et al. Calcium modulates the domain flexibility and function of an α-actinin similar to the ancestral α-actinin. Proceedings of the National Academy of Sciences. 2020;117(36):22101-22112. doi:10.1073/pnas.1917269117

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

2020 | Journal Article | IST-REx-ID: 8142 |

Montesinos López JC, Abuzeineh A, Kopf A, et al. Phytohormone cytokinin guides microtubule dynamics during cell progression from proliferative to differentiated stage. The Embo Journal. 2020;39(17). doi:10.15252/embj.2019104238

2020 | Journal Article | IST-REx-ID: 8336 |

Kubiasova K, Montesinos López JC, Šamajová O, et al. Cytokinin fluoroprobe reveals multiple sites of cytokinin perception at plasma membrane and endoplasmic reticulum. Nature Communications. 2020;11. doi:10.1038/s41467-020-17949-0

2020 | Journal Article | IST-REx-ID: 8337 |

Antoniadi I, Novák O, Gelová Z, et al. Cell-surface receptors enable perception of extracellular cytokinins. Nature Communications. 2020;11. doi:10.1038/s41467-020-17700-9

[Published Version] View | Files available | DOI | WoS

2020 | Journal Article | IST-REx-ID: 8139 |

Johnson AJ, Gnyliukh N, Kaufmann W, et al. Experimental toolbox for quantitative evaluation of clathrin-mediated endocytosis in the plant model Arabidopsis. Journal of Cell Science. 2020;133(15). doi:10.1242/jcs.248062

2020 | Journal Article | IST-REx-ID: 8001 |

Vandael DH, Borges Merjane C, Zhang X, Jonas PM. Short-term plasticity at hippocampal mossy fiber synapses is induced by natural activity patterns and associated with vesicle pool engram formation. Neuron. 2020;107(3):509-521. doi:10.1016/j.neuron.2020.05.013

2020 | Journal Article | IST-REx-ID: 8284 |

Steiner J, Sazanov LA. Structure and mechanism of the Mrp complex, an ancient cation/proton antiporter. eLife. 2020;9. doi:10.7554/eLife.59407

2020 | Research Data | IST-REx-ID: 8097 |

Kavcic B. Analysis scripts and research data for the paper “Mechanisms of drug interactions between translation-inhibiting antibiotics.” 2020. doi:10.15479/AT:ISTA:8097

[Published Version] View | Files available | DOI

2020 | Conference Paper | IST-REx-ID: 8724 |

Konstantinov NH, Frantar E, Alistarh D-A, Lampert C. On the sample complexity of adversarial multi-source PAC learning. In: Proceedings of the 37th International Conference on Machine Learning. Vol 119. ML Research Press; 2020:5416-5425.

[Published Version] View | Files available | arXiv

2020 | Journal Article | IST-REx-ID: 8535 |

Skrivan T, Soderstrom A, Johansson J, Sprenger C, Museth K, Wojtan C. Wave curves: Simulating Lagrangian water waves on dynamically deforming surfaces. ACM Transactions on Graphics. 2020;39(4). doi:10.1145/3386569.3392466

[Published Version] View | Files available | DOI | WoS

2020 | Journal Article | IST-REx-ID: 8384 |

Ishida S, Synak P, Narita F, Hachisuka T, Wojtan C. A model for soap film dynamics with evolving thickness. ACM Transactions on Graphics. 2020;39(4). doi:10.1145/3386569.3392405

[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.) | WoS

2020 | Journal Article | IST-REx-ID: 8385 |

Sperl G, Narain R, Wojtan C. Homogenized yarn-level cloth. ACM Transactions on Graphics. 2020;39(4). doi:10.1145/3386569.3392412

[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.) | WoS

2020 | Conference Paper | IST-REx-ID: 8188 |

Henderson PM, Lampert C. Unsupervised object-centric video generation and decomposition in 3D. In: 34th Conference on Neural Information Processing Systems. Vol 33. Curran Associates; 2020:3106–3117.

[Preprint] View | Download Preprint (ext.) | arXiv

2020 | Journal Article | IST-REx-ID: 8002 |

Hörmayer L, Montesinos López JC, Marhavá P, Benková E, Yoshida S, Friml J. Wounding-induced changes in cellular pressure and localized auxin signalling spatially coordinate restorative divisions in roots. Proceedings of the National Academy of Sciences. 2020;117(26). doi:10.1073/pnas.2003346117

2020 | Thesis | IST-REx-ID: 8032 |

Huszár K. Combinatorial width parameters for 3-dimensional manifolds. 2020. doi:10.15479/AT:ISTA:8032

[Published Version] View | Files available | DOI

2020 | Journal Article | IST-REx-ID: 7885

Reversat A, Gärtner FR, Merrin J, et al. Cellular locomotion using environmental topography. Nature. 2020;582:582–585. doi:10.1038/s41586-020-2283-z

View | Files available | DOI | WoS

2020 | Preprint | IST-REx-ID: 8545 |

Contreras X, Davaatseren A, Amberg N, et al. A genome-wide library of MADM mice for single-cell genetic mosaic analysis. bioRxiv. 2020. doi:10.1101/2020.06.05.136192

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2020 | Thesis | IST-REx-ID: 7902 |

Contreras X. Genetic dissection of neural development in health and disease at single cell resolution. 2020. doi:10.15479/AT:ISTA:7902

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2020 | Journal Article | IST-REx-ID: 7875 |

Kopf A, Renkawitz J, Hauschild R, et al. Microtubules control cellular shape and coherence in amoeboid migrating cells. The Journal of Cell Biology. 2020;219(6). doi:10.1083/jcb.201907154

2020 | Journal Article | IST-REx-ID: 5681 |

Hikaru I, Wojtan C, Thuerey N, Igarashi T, Ando R. Simulating liquids on dynamically warping grids. IEEE Transactions on Visualization and Computer Graphics. 2020;26(6):2288-2302. doi:10.1109/TVCG.2018.2883628

2020 | Journal Article | IST-REx-ID: 8203 |

Katsaros G, Kukucka J, Vukušić L, et al. Zero field splitting of heavy-hole states in quantum dots. Nano Letters. 2020;20(7):5201-5206. doi:10.1021/acs.nanolett.0c01466

2020 | Journal Article | IST-REx-ID: 7814 |

Beattie RJ, Hippenmeyer S, Pauler F. SCOPES: Sparking curiosity through Open-Source platforms in education and science. Frontiers in Education. 2020;5. doi:10.3389/feduc.2020.00048

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2020 | Journal Article | IST-REx-ID: 7815 |

Beattie RJ, Streicher C, Amberg N, et al. Lineage tracing and clonal analysis in developing cerebral cortex using mosaic analysis with double markers (MADM). Journal of Visual Experiments. 2020;(159). doi:10.3791/61147

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2020 | Journal Article | IST-REx-ID: 7600 |

Tan S, Zhang X, Kong W, et al. The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin efflux in Arabidopsis. Nature Plants. 2020;6:556-569. doi:10.1038/s41477-020-0648-9

2020 | Journal Article | IST-REx-ID: 7805 |

Hurny A, Cuesta C, Cavallari N, Ötvös K, Duclercq J, Dokládal L, Montesinos López JC, Gallemi M, Semerádová H, Rauter T, Stenzel I, Persiau G, Benade F, Bhalearo R, Sýkorová E, Gorzsás A, Sechet J, Mouille G, Heilmann I, De Jaeger G, Ludwig-Müller J, Benková E. 2020. Synergistic on Auxin and Cytokinin 1 positively regulates growth and attenuates soil pathogen resistance. Nature Communications. 11, 2170.

2020 | Journal Article | IST-REx-ID: 7619 |

Zhang X, Adamowski M, Marhavá P, et al. Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin transporters. The Plant Cell. 2020;32(5):1644-1664. doi:10.1105/tpc.19.00869

2020 | Journal Article | IST-REx-ID: 8765 |

Schreck C, Wojtan C. A practical method for animating anisotropic elastoplastic materials. Computer Graphics Forum. 2020;39(2):89-99. doi:10.1111/cgf.13914

[Submitted Version] View | Files available | DOI | WoS

2020 | Journal Article | IST-REx-ID: 7541 |

Gao F, Wang J-H, Watzinger H, et al. Site-controlled uniform Ge/Si hut wires with electrically tunable spin-orbit coupling. Advanced Materials. 2020;32(16). doi:10.1002/adma.201906523

[Published Version] View | Files available | DOI | WoS

2020 | Journal Article | IST-REx-ID: 7472 |

Käfer K, Nardin M, Blahna K, Csicsvari JL. Replay of behavioral sequences in the medial prefrontal cortex during rule switching. Neuron. 2020;106(1):P154-165.e6. doi:10.1016/j.neuron.2020.01.015

2020 | Journal Article | IST-REx-ID: 7580 |

Bezeljak U, Loya H, Kaczmarek BM, Saunders TE, Loose M. Stochastic activation and bistability in a Rab GTPase regulatory network. Proceedings of the National Academy of Sciences. 2020;117(12):6504-6549. doi:10.1073/pnas.1921027117

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2020 | Journal Article | IST-REx-ID: 7343 |

Milutinovic B, Stock M, Grasse AV, Naderlinger E, Hilbe C, Cremer S. Social immunity modulates competition between coinfecting pathogens. Ecology Letters. 2020;23(3):565-574. doi:10.1111/ele.13458

[Published Version] View | Files available | DOI | WoS

2020 | Thesis | IST-REx-ID: 7525 |

Bhandari P. Localization and functional role of Cav2.3 in the medial habenula to interpeduncular nucleus pathway. 2020. doi:10.15479/AT:ISTA:7525

[Published Version] View | Files available | DOI

2020 | Journal Article | IST-REx-ID: 7427 |

Tan S, Abas MF, Verstraeten I, et al. Salicylic acid targets protein phosphatase 2A to attenuate growth in plants. Current Biology. 2020;30(3):381-395.e8. doi:10.1016/j.cub.2019.11.058

2020 | Journal Article | IST-REx-ID: 7464 |

Dick RA, Xu C, Morado DR, et al. Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly. PLOS Pathogens. 2020;16(1). doi:10.1371/journal.ppat.1008277

2020 | Research Data Reference | IST-REx-ID: 9723 |

Dick RA, Xu C, Morado DR, et al. Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly. 2020. doi:10.1371/journal.ppat.1008277

[Published Version] View | Files available | DOI | Download Published Version (ext.)

2020 | Journal Article | IST-REx-ID: 7490 |

Narasimhan M, Johnson AJ, Prizak R, et al. Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants. eLife. 2020;9. doi:10.7554/eLife.52067

2020 | Preprint | IST-REx-ID: 7800 |

Morandell J, Schwarz LA, Basilico B, et al. Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. bioRxiv. doi:10.1101/2020.01.10.902064

[Preprint] View | Files available | DOI

2020 | Journal Article | IST-REx-ID: 7253 |

Laukoter S, Beattie RJ, Pauler F, Amberg N, Nakayama KI, Hippenmeyer S. Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex development. Nature Communications. 2020;11. doi:10.1038/s41467-019-14077-2

[Published Version] View | Files available | DOI | WoS

2020 | Journal Article | IST-REx-ID: 7252

Borges Merjane C, Kim O, Jonas PM. Functional Electron Microscopy (“Flash and Freeze”) of Identified Cortical Synapses in Acute Brain Slices. Neuron. 2020. doi:10.1016/j.neuron.2019.12.022

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2019 | Journal Article | IST-REx-ID: 7197 |

Dos Santos Caldas PR, Lopez Pelegrin MD, Pearce DJG, Budanur NB, Brugués J, Loose M. Cooperative ordering of treadmilling filaments in cytoskeletal networks of FtsZ and its crosslinker ZapA. Nature Communications. 2019;10. doi:10.1038/s41467-019-13702-4

[Published Version] View | Files available | DOI | WoS

2019 | Thesis | IST-REx-ID: 7186 |

Schwayer C. Mechanosensation of tight junctions depends on ZO-1 phase separation and flow. 2019. doi:10.15479/AT:ISTA:7186

[Published Version] View | Files available | DOI

2019 | Thesis | IST-REx-ID: 7172 |

Vasileva MK. Molecular mechanisms of endomembrane trafficking in Arabidopsis thaliana. 2019. doi:10.15479/AT:ISTA:7172

[Published Version] View | Files available | DOI

2019 | Journal Article | IST-REx-ID: 7026 |

Lukacisin M, Bollenbach MT. Emergent gene expression responses to drug combinations predict higher-order drug interactions. Cell Systems. 2019;9(5):423-433.e1-e3. doi:10.1016/j.cels.2019.10.004

[Published Version] View | Files available | DOI | WoS

2019 | Journal Article | IST-REx-ID: 6486 |

Kühnen J, Scarselli D, Hof B. Relaminarization of pipe flow by means of 3D-printed shaped honeycombs. Journal of Fluids Engineering. 2019;141(11). doi:10.1115/1.4043494

2019 | Journal Article | IST-REx-ID: 7001 |

Schwayer C, Shamipour S, Pranjic-Ferscha K, et al. Mechanosensation of tight junctions depends on ZO-1 phase separation and flow. Cell. 2019;179(4):937-952.e18. doi:10.1016/j.cell.2019.10.006

2019 | Preprint | IST-REx-ID: 10065 |

Hofmann AC, Jirovec D, Borovkov M, et al. Assessing the potential of Ge/SiGe quantum dots as hosts for singlet-triplet qubits. arXiv. doi:10.48550/arXiv.1910.05841

[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv

2019 | Thesis | IST-REx-ID: 6947 |

Assen FP. Lymph node mechanics: Deciphering the interplay between stroma contractility, morphology and lymphocyte trafficking. 2019. doi:10.15479/AT:ISTA:6947

[Published Version] View | Files available | DOI

2019 | Journal Article | IST-REx-ID: 6978 |

Budanur NB, Dogra A, Hof B. Geometry of transient chaos in streamwise-localized pipe flow turbulence. Physical Review Fluids. 2019;4(10):102401. doi:10.1103/PhysRevFluids.4.102401

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2019 | Journal Article | IST-REx-ID: 6897 |

Zhu Q, Gallemi M, Pospíšil J, Žádníková P, Strnad M, Benková E. Root gravity response module guides differential growth determining both root bending and apical hook formation in Arabidopsis. Development. 2019;146(17). doi:10.1242/dev.175919

2019 | Journal Article | IST-REx-ID: 6848 |

Kampjut D, Sazanov LA. Structure and mechanism of mitochondrial proton-translocating transhydrogenase. Nature. 2019;573(7773):291–295. doi:10.1038/s41586-019-1519-2

2019 | Thesis | IST-REx-ID: 6849 |

Rangel Guerrero DK. The role of CCK-interneurons in regulating hippocampal network dynamics. 2019. doi:10.15479/AT:ISTA:6849

[Published Version] View | Files available | DOI

2019 | Journal Article | IST-REx-ID: 6859

Zhou L, Sazanov LA. Structure and conformational plasticity of the intact Thermus thermophilus V/A-type ATPase. Science. 2019;365(6455). doi:10.1126/science.aaw9144

2019 | Journal Article | IST-REx-ID: 6442 |

Schreck C, Hafner C, Wojtan C. Fundamental solutions for water wave animation. ACM Transactions on Graphics. 2019;38(4). doi:10.1145/3306346.3323002

[Submitted Version] View | Files available | DOI | WoS

2019 | Journal Article | IST-REx-ID: 6755 |

Picard MAL, Vicoso B, Roquis D, et al. Dosage compensation throughout the Schistosoma mansoni lifecycle: Specific chromatin landscape of the Z chromosome. Genome biology and evolution. 2019;11(7):1909-1922. doi:10.1093/gbe/evz133

2019 | Journal Article | IST-REx-ID: 6609 |

Barzanjeh S, Redchenko E, Peruzzo M, et al. Stationary entangled radiation from micromechanical motion. Nature. 2019;570:480-483. doi:10.1038/s41586-019-1320-2

[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv

2019 | Journal Article | IST-REx-ID: 6611 |

Glanc M, Fendrych M, Friml J. PIN2 polarity establishment in arabidopsis in the absence of an intact cytoskeleton. Biomolecules. 2019;9(6). doi:10.3390/biom9060222

2019 | Thesis | IST-REx-ID: 6546 |

Valosková K. The role of a highly conserved major facilitator superfamily member in Drosophila embryonic macrophage migration. 2019. doi:10.15479/AT:ISTA:6546

[Published Version] View | Files available | DOI

2019 | Journal Article | IST-REx-ID: 6508 |

Shamipour S, Kardos R, Xue S, Hof B, Hannezo EB, Heisenberg C-PJ. Bulk actin dynamics drive phase segregation in zebrafish oocytes. Cell. 2019;177(6):1463-1479.e18. doi:10.1016/j.cell.2019.04.030

2019 | Thesis | IST-REx-ID: 6392 |

Lukacisin M. Quantitative investigation of gene expression principles through combinatorial drug perturbation and theory. 2019. doi:10.15479/AT:ISTA:6392

[Published Version] View | Files available | DOI

2019 | Thesis | IST-REx-ID: 6435 |

Casillas Perez BE. Collective defenses of garden ants against a fungal pathogen. 2019. doi:10.15479/AT:ISTA:6435

[Published Version] View | Files available | DOI

2019 | Journal Article | IST-REx-ID: 6603 |

Marhavá P, Hörmayer L, Yoshida S, Marhavý P, Benková E, Friml J. Re-activation of stem cell pathways for pattern restoration in plant wound healing. Cell. 2019;177(4):957-969.e13. doi:10.1016/j.cell.2019.04.015

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2019 | Journal Article | IST-REx-ID: 6351 |

2019 | Journal Article | IST-REx-ID: 6328 |

Renkawitz J, Kopf A, Stopp JA, et al. Nuclear positioning facilitates amoeboid migration along the path of least resistance. Nature. 2019;568:546-550. doi:10.1038/s41586-019-1087-5

2019 | Journal Article | IST-REx-ID: 6418 |

Huylmans AK, Toups MA, Macon A, Gammerdinger WJ, Vicoso B. Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome. Genome biology and evolution. 2019;11(4):1033-1044. doi:10.1093/gbe/evz053

[Published Version] View | Files available | DOI | WoS

2019 | Journal Article | IST-REx-ID: 6187 |

Valosková K, Bicher J, Roblek M, et al. A conserved major facilitator superfamily member orchestrates a subset of O-glycosylation to aid macrophage tissue invasion. eLife. 2019;8. doi:10.7554/elife.41801

[Published Version] View | Files available | DOI | WoS

2019 | Journal Article | IST-REx-ID: 6087 |

Xia P, Gütl DJ, Zheden V, Heisenberg C-PJ. Lateral inhibition in cell specification mediated by mechanical signals modulating TAZ activity. Cell. 2019;176(6):1379-1392.e14. doi:10.1016/j.cell.2019.01.019

2019 | Journal Article | IST-REx-ID: 6046 |

Mitosch K, Rieckh G, Bollenbach MT. Temporal order and precision of complex stress responses in individual bacteria. Molecular systems biology. 2019;15(2). doi:10.15252/msb.20188470

2019 | Journal Article | IST-REx-ID: 6025 |

Capek D, Smutny M, Tichy AM, Morri M, Janovjak HL, Heisenberg C-PJ. Light-activated Frizzled7 reveals a permissive role of non-canonical wnt signaling in mesendoderm cell migration. eLife. 2019;8. doi:10.7554/eLife.42093

[Published Version] View | Files available | DOI | WoS

2019 | Thesis | IST-REx-ID: 6269 |

Narasimhan M. Clathrin-Mediated endocytosis, post-endocytic trafficking and their regulatory controls in plants . 2019. doi:10.15479/at:ista:th1075

[Published Version] View | Files available | DOI

2019 | Journal Article | IST-REx-ID: 5789 |

Petridou N, Grigolon S, Salbreux G, Hannezo EB, Heisenberg C-PJ. Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical Wnt signalling. Nature Cell Biology. 2019;21:169–178. doi:10.1038/s41556-018-0247-4

2019 | Journal Article | IST-REx-ID: 7406

Mckenzie C, Spanova M, Johnson AJ, et al. Isolation of synaptic vesicles from genetically engineered cultured neurons. Journal of Neuroscience Methods. 2019;312:114-121. doi:10.1016/j.jneumeth.2018.11.018

View | DOI | WoS | PubMed | Europe PMC

2018 | Thesis | IST-REx-ID: 6263 |

Lukacisinova M. Genetic determinants of antibiotic resistance evolution. 2018. doi:10.15479/AT:ISTA:th1072

[Published Version] View | Files available | DOI

2018 | Journal Article | IST-REx-ID: 3 |

Deliu E, Arecco N, Morandell J, et al. Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition. Nature Neuroscience. 2018;21(12):1717-1727. doi:10.1038/s41593-018-0266-2

[Submitted Version] View | Files available | DOI | WoS

2018 | Journal Article | IST-REx-ID: 23 |

Vukušić L, Kukucka J, Watzinger H, Milem JM, Schäffler F, Katsaros G. Single-shot readout of hole spins in Ge. Nano Letters. 2018;18(11):7141-7145. doi:10.1021/acs.nanolett.8b03217

2018 | Journal Article | IST-REx-ID: 44 |

Turner CJ, Michailidis A, Abanin DA, Serbyn M, Papić Z. Quantum scarred eigenstates in a Rydberg atom chain: Entanglement, breakdown of thermalization, and stability to perturbations. Physical Review B. 2018;98(15). doi:10.1103/PhysRevB.98.155134

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2018 | Journal Article | IST-REx-ID: 77 |

Watzinger H, Kukucka J, Vukušić L, et al. A germanium hole spin qubit. Nature Communications. 2018;9(3902). doi:10.1038/s41467-018-06418-4

[Published Version] View | Files available | DOI | WoS

2018 | Journal Article | IST-REx-ID: 134 |

Jeschke S, Skrivan T, Mueller Fischer M, Chentanez N, Macklin M, Wojtan C. Water surface wavelets. ACM Transactions on Graphics. 2018;37(4). doi:10.1145/3197517.3201336

[Published Version] View | Files available | DOI | WoS

2018 | Journal Article | IST-REx-ID: 15 |

Hons M, Kopf A, Hauschild R, et al. Chemokines and integrins independently tune actin flow and substrate friction during intranodal migration of T cells. Nature Immunology. 2018;19(6):606-616. doi:10.1038/s41590-018-0109-z

2018 | Journal Article | IST-REx-ID: 308 |

Ratheesh A, Bicher J, Smutny M, et al. Drosophila TNF modulates tissue tension in the embryo to facilitate macrophage invasive migration. Developmental Cell. 2018;45(3):331-346. doi:10.1016/j.devcel.2018.04.002

2018 | Thesis | IST-REx-ID: 323 |

Leithner AF. Branched actin networks in dendritic cell biology. 2018. doi:10.15479/AT:ISTA:th_998

[Published Version] View | Files available | DOI

2018 | Journal Article | IST-REx-ID: 402 |

Brown M, Assen FP, Leithner AF, et al. Lymph node blood vessels provide exit routes for metastatic tumor cell dissemination in mice. Science. 2018;359(6382):1408-1411. doi:10.1126/science.aal3662

2018 | Journal Article | IST-REx-ID: 328 |

Choueiri GH, Lopez Alonso JM, Hof B. Exceeding the asymptotic limit of polymer drag reduction. Physical Review Letters. 2018;120(12). doi:10.1103/PhysRevLett.120.124501

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2018 | Journal Article | IST-REx-ID: 326 |

Sawada K, Kawakami R, Shigemoto R, Nemoto T. Super resolution structural analysis of dendritic spines using three-dimensional structured illumination microscopy in cleared mouse brain slices. European Journal of Neuroscience. 2018;47(9):1033-1042. doi:10.1111/ejn.13901

[Published Version] View | Files available | DOI | WoS

2018 | Thesis | IST-REx-ID: 395 |

Tarlungeanu D-C. The branched chain amino acids in autism spectrum disorders . 2018. doi:10.15479/AT:ISTA:th_992

[Published Version] View | Files available | DOI

2018 | Journal Article | IST-REx-ID: 544 |

György A, Roblek M, Ratheesh A, et al. Tools allowing independent visualization and genetic manipulation of Drosophila melanogaster macrophages and surrounding tissues. G3: Genes, Genomes, Genetics. 2018;8(3):845-857. doi:10.1534/g3.117.300452

[Published Version] View | Files available | DOI | WoS

2018 | Journal Article | IST-REx-ID: 503

Tomasek K, Bergmiller T, Guet CC. Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains. Journal of Biotechnology. 2018;268:40-52. doi:10.1016/j.jbiotec.2018.01.008

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2018 | Journal Article | IST-REx-ID: 437 |

Leithner AF, Renkawitz J, de Vries I, Hauschild R, Haecker H, Sixt MK. Fast and efficient genetic engineering of hematopoietic precursor cells for the study of dendritic cell migration. European Journal of Immunology. 2018;48(6):1074-1077. doi:10.1002/eji.201747358

[Published Version] View | Files available | DOI | WoS

2017 | Book Chapter | IST-REx-ID: 1213

Baranova NS, Loose M. Single-molecule measurements to study polymerization dynamics of FtsZ-FtsA copolymers. In: Echard A, ed. Cytokinesis. Vol 137. Academic Press; 2017:355-370. doi:10.1016/bs.mcb.2016.03.036

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2017 | Journal Article | IST-REx-ID: 749 |

Chen C, Satterfield R, Young S, Jonas PM. Triple function of Synaptotagmin 7 ensures efficiency of high-frequency transmission at central GABAergic synapses. Cell Reports. 2017;21(8):2082-2089. doi:10.1016/j.celrep.2017.10.122

[Published Version] View | Files available | DOI | WoS

2017 | Journal Article | IST-REx-ID: 804 |

Schmalhorst PS, Deluweit F, Scherrers R, Heisenberg C-PJ, Sikora MK. Overcoming the limitations of the MARTINI force field in simulations of polysaccharides. Journal of Chemical Theory and Computation. 2017;13(10):5039-5053. doi:10.1021/acs.jctc.7b00374

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2017 | Journal Article | IST-REx-ID: 727

Mueller J, Szep G, Nemethova M, et al. Load adaptation of lamellipodial actin networks. Cell. 2017;171(1):188-200. doi:10.1016/j.cell.2017.07.051

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2017 | Journal Article | IST-REx-ID: 803 |

Samwer M, Schneider M, Hoefler R, et al. DNA cross-bridging shapes a single nucleus from a set of mitotic chromosomes. Cell. 2017;170(5):956-972. doi:10.1016/j.cell.2017.07.038

[Published Version] View | Files available | DOI | WoS

2017 | Journal Article | IST-REx-ID: 840 |

Vukušić L, Kukucka J, Watzinger H, Katsaros G. Fast hole tunneling times in germanium hut wires probed by single-shot reflectometry. Nano Letters. 2017;17(9):5706-5710. doi:10.1021/acs.nanolett.7b02627

[Published Version] View | Files available | DOI | WoS

2017 | Journal Article | IST-REx-ID: 470 |

Jeschke S, Wojtan C. Water wave packets. ACM Transactions on Graphics. 2017;36(4). doi:10.1145/3072959.3073678

[Published Version] View | Files available | DOI

2017 | Journal Article | IST-REx-ID: 946 |

von Wangenheim D, Hauschild R, Fendrych M, Barone V, Benková E, Friml J. Live tracking of moving samples in confocal microscopy for vertically grown roots. eLife. 2017;6. doi:10.7554/eLife.26792

[Published Version] View | Files available | DOI | WoS

2017 | Journal Article | IST-REx-ID: 944

Beattie RJ, Postiglione MP, Burnett L, et al. Mosaic analysis with double markers reveals distinct sequential functions of Lgl1 in neural stem cells. Neuron. 2017;94(3):517-533.e3. doi:10.1016/j.neuron.2017.04.012

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2017 | Journal Article | IST-REx-ID: 661 |

Smutny M, Ákos Z, Grigolon S, et al. Friction forces position the neural anlage. Nature Cell Biology. 2017;19:306-317. doi:10.1038/ncb3492

2017 | Journal Article | IST-REx-ID: 1067 |

Morita H, Grigolon S, Bock M, Krens G, Salbreux G, Heisenberg C-PJ. The physical basis of coordinated tissue spreading in zebrafish gastrulation. Developmental Cell. 2017;40(4):354-366. doi:10.1016/j.devcel.2017.01.010

[Published Version] View | Files available | DOI | WoS

2017 | Journal Article | IST-REx-ID: 1087 |

Song B, Barkley D, Hof B, Avila M. Speed and structure of turbulent fronts in pipe flow. Journal of Fluid Mechanics. 2017;813:1045-1059. doi:10.1017/jfm.2017.14

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2017 | Journal Article | IST-REx-ID: 1118 |

Gan J, Weng S-M, Pernia-Andrade A, Csicsvari JL, Jonas PM. Phase-locked inhibition, but not excitation, underlies hippocampal ripple oscillations in awake mice in vivo. Neuron. 2017;93(2):308-314. doi:10.1016/j.neuron.2016.12.018

[Published Version] View | Files available | DOI | WoS

2017 | Journal Article | IST-REx-ID: 1078 |

von Wangenheim D, Hauschild R, Friml J. Light sheet fluorescence microscopy of plant roots growing on the surface of a gel. Journal of visualized experiments JoVE. 2017;2017(119). doi:10.3791/55044

[Published Version] View | Files available | DOI | WoS

2017 | Journal Article | IST-REx-ID: 1117 |

Chen C, Arai itaru, Satterield R, Young S, Jonas PM. Synaptotagmin 2 is the fast Ca2+ sensor at a central inhibitory synapse. Cell Reports. 2017;18(3):723-736. doi:10.1016/j.celrep.2016.12.067

[Published Version] View | Files available | DOI | WoS

2016 | Journal Article | IST-REx-ID: 1323 |

Vyleta N, Borges Merjane C, Jonas PM. Plasticity-dependent, full detonation at hippocampal mossy fiber–CA3 pyramidal neuron synapses. eLife. 2016;5. doi:10.7554/eLife.17977

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2016 | Journal Article | IST-REx-ID: 1321 |

Leithner AF, Eichner A, Müller J, et al. Diversified actin protrusions promote environmental exploration but are dispensable for locomotion of leukocytes. Nature Cell Biology. 2016;18:1253-1259. doi:10.1038/ncb3426

[Submitted Version] View | Files available | DOI

2016 | Journal Article | IST-REx-ID: 1350 |

Guzmán J, Schlögl A, Frotscher M, Jonas PM. Synaptic mechanisms of pattern completion in the hippocampal CA3 network. Science. 2016;353(6304):1117-1123. doi:10.1126/science.aaf1836

[Preprint] View | Files available | DOI

2016 | Journal Article | IST-REx-ID: 1271 |

Diz Muñoz A, Romanczuk P, Yu W, et al. Steering cell migration by alternating blebs and actin-rich protrusions. BMC Biology. 2016;14(1). doi:10.1186/s12915-016-0294-x

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2016 | Book Chapter | IST-REx-ID: 1094

Harada H, Shigemoto R. Immunogold protein localization on grid-glued freeze-fracture replicas. In: High-Resolution Imaging of Cellular Proteins. Vol 1474. Springer; 2016:203-216. doi:10.1007/978-1-4939-6352-2_12

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2016 | Journal Article | IST-REx-ID: 1100 |

Sako K, Pradhan S, Barone V, et al. Optogenetic control of nodal signaling reveals a temporal pattern of nodal signaling regulating cell fate specification during gastrulation. Cell Reports. 2016;16(3):866-877. doi:10.1016/j.celrep.2016.06.036

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2016 | Conference Paper | IST-REx-ID: 1363 |

Bojsen-Hansen M, Wojtan C. Generalized non-reflecting boundaries for fluid re-simulation. In: Vol 35. ACM; 2016. doi:10.1145/2897824.2925963

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2016 | Thesis | IST-REx-ID: 1129 |

Schwarz J. Quantitative analysis of haptotactic cell migration. 2016.

[Published Version] View | Files available

2016 | Journal Article | IST-REx-ID: 1492 |

Marhavý P, Montesinos López JC, Abuzeineh A, et al. Targeted cell elimination reveals an auxin-guided biphasic mode of lateral root initiation. Genes and Development. 2016;30(4):471-483. doi:10.1101/gad.276964.115

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2016 | Journal Article | IST-REx-ID: 1599 |

Kiermaier E, Moussion C, Veldkamp C, et al. Polysialylation controls dendritic cell trafficking by regulating chemokine recognition. Science. 2016;351(6269):186-190. doi:10.1126/science.aad0512

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2016 | Journal Article | IST-REx-ID: 1597

Schwarz J, Sixt MK. Quantitative analysis of dendritic cell haptotaxis. Methods in Enzymology. 2016;570:567-581. doi:10.1016/bs.mie.2015.11.004

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2015 | Journal Article | IST-REx-ID: 1537 |

Ruprecht V, Wieser S, Callan Jones A, et al. Cortical contractility triggers a stochastic switch to fast amoeboid cell motility. Cell. 2015;160(4):673-685. doi:10.1016/j.cell.2015.01.008

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2015 | Journal Article | IST-REx-ID: 1993 |

Konrad M, Grasse AV, Tragust S, Cremer S. Anti-pathogen protection versus survival costs mediated by an ectosymbiont in an ant host. Proceedings of the Royal Society of London Series B Biological Sciences. 2015;282(1799). doi:10.1098/rspb.2014.1976

2015 | Journal Article | IST-REx-ID: 1640 |

Šimášková M, O’Brien J, Khan-Djamei M, et al. Cytokinin response factors regulate PIN-FORMED auxin transporters. Nature Communications. 2015;6. doi:10.1038/ncomms9717

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2014 | Thesis | IST-REx-ID: 1403

Behrndt M. Forces driving epithelial spreading in zebrafish epiboly. 2014.

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2013 | Journal Article | IST-REx-ID: 2282 |

Campinho P, Behrndt M, Ranft J, Risler T, Minc N, Heisenberg C-PJ. Tension-oriented cell divisions limit anisotropic tissue tension in epithelial spreading during zebrafish epiboly. Nature Cell Biology. 2013;15:1405-1414. doi:10.1038/ncb2869

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2013 | Thesis | IST-REx-ID: 1406

Campinho P. Mechanics of zebrafish epiboly: Tension-oriented cell divisions limit anisotropic tissue tension in epithelial spreading. 2013.

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2013 | Journal Article | IST-REx-ID: 2944

Aeschbacher S, Futschik A, Beaumont M. Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates. . Molecular Ecology. 2013;22(4):987-1002. doi:10.1111/mec.12165

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2012 | Journal Article | IST-REx-ID: 2962 |

Aeschbacher S, Beaumont M, Futschik A. A novel approach for choosing summary statistics in approximate Bayesian computation. Genetics. 2012;192(3):1027-1047. doi:10.1534/genetics.112.143164

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2012 | Journal Article | IST-REx-ID: 2950

Behrndt M, Salbreux G, Campinho P, et al. Forces driving epithelial spreading in zebrafish gastrulation. Science. 2012;338(6104):257-260. doi:10.1126/science.1224143

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2012 | Journal Article | IST-REx-ID: 2951

Maître J-L, Berthoumieux H, Krens G, et al. Adhesion functions in cell sorting by mechanically coupling the cortices of adhering cells. Science. 2012;338(6104):253-256. doi:10.1126/science.1225399

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2011 | Journal Article | IST-REx-ID: 3396 |

Stockinger P, Heisenberg C-PJ, Maître J-L. Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube. Development. 2011;138(21):4673-4683. doi:10.1242/dev.071233

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2010 | Journal Article | IST-REx-ID: 4157 |

Papusheva E, Heisenberg C-PJ. Spatial organization of adhesion: force-dependent regulation and function in tissue morphogenesis. EMBO Journal. 2010;29(16):2753-2768. doi:10.1038/emboj.2010.182

[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC

2022 | Thesis | IST-REx-ID: 11896

Artner C. Modulation of auxin transport via ZF proteins adjust plant response to high ambient temperature. 2022.

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2023 | Research Data | IST-REx-ID: 12373 |

Gupta D, Sumser AL, Jösch MA. Research Data for: Panoramic visual statistics shape retina-wide organization of receptive fields. 2023.

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