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3060 Publications
2013 | Conference Paper | IST-REx-ID: 2305 | 
Trading performance for stability in Markov decision processes
T. Brázdil, K. Chatterjee, V. Forejt, A. Kučera, in:, 28th Annual ACM/IEEE Symposium, IEEE, 2013, pp. 331–340.
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T. Brázdil, K. Chatterjee, V. Forejt, A. Kučera, in:, 28th Annual ACM/IEEE Symposium, IEEE, 2013, pp. 331–340.
2013 | Conference Paper | IST-REx-ID: 2327 |
From model checking to model measuring
T.A. Henzinger, J. Otop, 8052 (2013) 273–287.
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T.A. Henzinger, J. Otop, 8052 (2013) 273–287.
2013 | Conference Paper | IST-REx-ID: 2328 |
Aspect-oriented linearizability proofs
T.A. Henzinger, A. Sezgin, V. Vafeiadis, 8052 (2013) 242–256.
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T.A. Henzinger, A. Sezgin, V. Vafeiadis, 8052 (2013) 242–256.
2013 | Conference Paper | IST-REx-ID: 2329 |
Hyperplane separation technique for multidimensional mean-payoff games
K. Chatterjee, Y. Velner, 8052 (2013) 500–515.
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K. Chatterjee, Y. Velner, 8052 (2013) 500–515.
2013 | Journal Article | IST-REx-ID: 2410 |
Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis
R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements 1 (2013).
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R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements 1 (2013).
2013 | Journal Article | IST-REx-ID: 2412 |
Probabilistic models for CRISPR spacer content evolution
A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
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A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
2013 | Book Chapter | IST-REx-ID: 2413
Neuronal oscillations scale up and scale down the brain dynamics
M. Valderrama, V. Botella Soler, M. Le Van Quyen, in:, M. Meyer, Z. Pesenson (Eds.), Multiscale Analysis and Nonlinear Dynamics: From Genes to the Brain, Wiley-VCH, 2013.
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M. Valderrama, V. Botella Soler, M. Le Van Quyen, in:, M. Meyer, Z. Pesenson (Eds.), Multiscale Analysis and Nonlinear Dynamics: From Genes to the Brain, Wiley-VCH, 2013.
2013 | Journal Article | IST-REx-ID: 2443
Defining the selectivity of processes along the auxin response chain: A study using auxin analogues
S. Simon, M. Kubeš, P. Baster, S. Robert, P. Dobrev, J. Friml, J. Petrášek, E. Zažímalová, New Phytologist 200 (2013) 1034–1048.
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S. Simon, M. Kubeš, P. Baster, S. Robert, P. Dobrev, J. Friml, J. Petrášek, E. Zažímalová, New Phytologist 200 (2013) 1034–1048.
2013 | Conference Paper | IST-REx-ID: 2444 |
Faster algorithms for Markov decision processes with low treewidth
K. Chatterjee, J. Ła̧Cki, 8044 (2013) 543–558.
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K. Chatterjee, J. Ła̧Cki, 8044 (2013) 543–558.
2013 | Conference Paper | IST-REx-ID: 2446 |
Automata with generalized Rabin pairs for probabilistic model checking and LTL synthesis
K. Chatterjee, A. Gaiser, J. Kretinsky, 8044 (2013) 559–575.
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K. Chatterjee, A. Gaiser, J. Kretinsky, 8044 (2013) 559–575.
2013 | Conference Paper | IST-REx-ID: 2447 |
Automating separation logic using SMT
R. Piskac, T. Wies, D. Zufferey, 8044 (2013) 773–789.
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R. Piskac, T. Wies, D. Zufferey, 8044 (2013) 773–789.
2013 | Journal Article | IST-REx-ID: 2448 |
ZIFL1.1 transporter modulates polar auxin transport by stabilizing membrane abundance of multiple PINs in Arabidopsis root tip
E. Remy, P. Baster, J. Friml, P. Duque, Plant Signaling & Behavior 8 (2013).
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E. Remy, P. Baster, J. Friml, P. Duque, Plant Signaling & Behavior 8 (2013).
2013 | Journal Article | IST-REx-ID: 2449
Retromer subunits VPS35A and VPS29 mediate prevacuolar compartment (PVC) function in Arabidopsis
T. Nodzyński, M. Feraru, S. Hirsch, R. De Rycke, C. Nicuales, J. Van Leene, G. De Jaeger, S. Vanneste, J. Friml, Molecular Plant 6 (2013) 1849–1862.
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T. Nodzyński, M. Feraru, S. Hirsch, R. De Rycke, C. Nicuales, J. Van Leene, G. De Jaeger, S. Vanneste, J. Friml, Molecular Plant 6 (2013) 1849–1862.
2013 | Journal Article | IST-REx-ID: 2466 |
Highly adaptive liquid simulations on tetrahedral meshes
R. Ando, N. Thuerey, C.J. Wojtan, ACM Transactions on Graphics 32 (2013).
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R. Ando, N. Thuerey, C.J. Wojtan, ACM Transactions on Graphics 32 (2013).
2013 | Journal Article | IST-REx-ID: 2467 |
Putting holes in holey geometry: Topology change for arbitrary surfaces
G. Bernstein, C.J. Wojtan, ACM Transactions on Graphics 32 (2013).
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G. Bernstein, C.J. Wojtan, ACM Transactions on Graphics 32 (2013).
2013 | Journal Article | IST-REx-ID: 2468 |
Liquid surface tracking with error compensation
M. Bojsen-Hansen, C.J. Wojtan, ACM Transactions on Graphics 32 (2013).
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M. Bojsen-Hansen, C.J. Wojtan, ACM Transactions on Graphics 32 (2013).
2013 | Journal Article | IST-REx-ID: 2469 |
Three functions of cadherins in cell adhesion
J.-L. Maître, C.-P.J. Heisenberg, Current Biology 23 (2013) R626–R633.
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J.-L. Maître, C.-P.J. Heisenberg, Current Biology 23 (2013) R626–R633.
2013 | Journal Article | IST-REx-ID: 2470 |
Overexpression of the auxin binding PROTEIN1 modulates PIN-dependent auxin transport in tobacco cells
M. Čovanová, M. Sauer, J. Rychtář, J. Friml, J. Petrášek, E. Zažímalová, PLoS One 8 (2013).
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M. Čovanová, M. Sauer, J. Rychtář, J. Friml, J. Petrášek, E. Zažímalová, PLoS One 8 (2013).
2013 | Journal Article | IST-REx-ID: 2471 |
Mechanism of protein kinetic stabilization by engineered disulfide crosslinks
I. Sanchez-Romero, A. Ariza, K. Wilson, M. Skjøt, J. Vind, L. De Maria, L. Skov, J. Sánchez Ruiz, PLoS One 8 (2013).
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I. Sanchez-Romero, A. Ariza, K. Wilson, M. Skjøt, J. Vind, L. De Maria, L. Skov, J. Sánchez Ruiz, PLoS One 8 (2013).
2013 | Journal Article | IST-REx-ID: 2472 |
Role of the Arabidopsis PIN6 auxin transporter in auxin homeostasis and auxin-mediated development
C. Cazzonelli, M. Vanstraelen, S. Simon, K. Yin, A. Carron Arthur, N. Nisar, G. Tarle, A. Cuttriss, I. Searle, E. Benková, U. Mathesius, J. Masle, J. Friml, B. Pogson, PLoS One 8 (2013).
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C. Cazzonelli, M. Vanstraelen, S. Simon, K. Yin, A. Carron Arthur, N. Nisar, G. Tarle, A. Cuttriss, I. Searle, E. Benková, U. Mathesius, J. Masle, J. Friml, B. Pogson, PLoS One 8 (2013).
2013 | Journal Article | IST-REx-ID: 2473 |
Genetic hitch-hiking in spatially extended populations
N.H. Barton, A. Etheridge, J. Kelleher, A. Véber, Theoretical Population Biology 87 (2013) 75–89.
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N.H. Barton, A. Etheridge, J. Kelleher, A. Véber, Theoretical Population Biology 87 (2013) 75–89.
2013 | Journal Article | IST-REx-ID: 2516
Attribute-based classification for zero-shot learning of object categories
C. Lampert, H. Nickisch, S. Harmeling, IEEE Transactions on Pattern Analysis and Machine Intelligence 36 (2013) 453–465.
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C. Lampert, H. Nickisch, S. Harmeling, IEEE Transactions on Pattern Analysis and Machine Intelligence 36 (2013) 453–465.
2013 | Conference Paper | IST-REx-ID: 2517 |
Formalizing and reasoning about quality
S. Almagor, U. Boker, O. Kupferman, 7966 (2013) 15–27.
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S. Almagor, U. Boker, O. Kupferman, 7966 (2013) 15–27.
2013 | Conference Paper | IST-REx-ID: 2518 |
The power of linear programming for finite-valued CSPs: A constructive characterization
V. Kolmogorov, in:, Springer, 2013, pp. 625–636.
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V. Kolmogorov, in:, Springer, 2013, pp. 625–636.
2013 | Conference Paper | IST-REx-ID: 2520 |
The supervised IBP: Neighbourhood preserving infinite latent feature models
N. Quadrianto, V. Sharmanska, D. Knowles, Z. Ghahramani, in:, Proceedings of the 29th Conference Uncertainty in Artificial Intelligence, AUAI Press, 2013, pp. 527–536.
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N. Quadrianto, V. Sharmanska, D. Knowles, Z. Ghahramani, in:, Proceedings of the 29th Conference Uncertainty in Artificial Intelligence, AUAI Press, 2013, pp. 527–536.
2013 | Journal Article | IST-REx-ID: 2698 |
Stability and semiclassics in self-generated fields
L. Erdös, S. Fournais, J. Solovej, Journal of the European Mathematical Society 15 (2013) 2093–2113.
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L. Erdös, S. Fournais, J. Solovej, Journal of the European Mathematical Society 15 (2013) 2093–2113.
2013 | Conference Paper | IST-REx-ID: 2718 |
Can quantitative and population genetics help us understand evolutionary computation?
N.H. Barton, T. Paixao, in:, Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, ACM, 2013, pp. 1573–1580.
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N.H. Barton, T. Paixao, in:, Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, ACM, 2013, pp. 1573–1580.
2013 | Conference Paper | IST-REx-ID: 2719
A variance decomposition approach to the analysis of genetic algorithms
T. Paixao, N.H. Barton, in:, Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, ACM, 2013, pp. 845–852.
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T. Paixao, N.H. Barton, in:, Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, ACM, 2013, pp. 845–852.
2013 | Journal Article | IST-REx-ID: 2720 |
Accumulation of spontaneous mutations in the ciliate Tetrahymena thermophila
H. Long, T. Paixao, R. Azevedo, R. Zufall, Genetics 195 (2013) 527–540.
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H. Long, T. Paixao, R. Azevedo, R. Zufall, Genetics 195 (2013) 527–540.
2013 | Journal Article | IST-REx-ID: 2782 |
Local eigenvalue density for general MANOVA matrices
L. Erdös, B. Farrell, Journal of Statistical Physics 152 (2013) 1003–1032.
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L. Erdös, B. Farrell, Journal of Statistical Physics 152 (2013) 1003–1032.
2013 | Journal Article | IST-REx-ID: 2806
High-precision Taylor-Couette experiment to study subcritical transitions and the role of boundary conditions and size effects
K. Avila, B. Hof, Review of Scientific Instruments 84 (2013).
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K. Avila, B. Hof, Review of Scientific Instruments 84 (2013).
2013 | Conference Paper | IST-REx-ID: 2807 |
Extending continuous maps: Polynomiality and undecidability
M. Čadek, M. Krcál, J. Matoušek, L. Vokřínek, U. Wagner, in:, 45th Annual ACM Symposium on Theory of Computing, ACM, 2013, pp. 595–604.
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M. Čadek, M. Krcál, J. Matoušek, L. Vokřínek, U. Wagner, in:, 45th Annual ACM Symposium on Theory of Computing, ACM, 2013, pp. 595–604.
2013 | Journal Article | IST-REx-ID: 2808 |
The moss physcomitrella patens reproductive organ development is highly organized, affected by the two SHI/STY genes and by the level of active auxin in the SHI/STY expression domain
K. Landberg, E. Pederson, T. Viaene, B. Bozorg, J. Friml, H. Jönsson, M. Thelander, E. Sundberg, Plant Physiology 162 (2013) 1406–1419.
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K. Landberg, E. Pederson, T. Viaene, B. Bozorg, J. Friml, H. Jönsson, M. Thelander, E. Sundberg, Plant Physiology 162 (2013) 1406–1419.
2013 | Journal Article | IST-REx-ID: 2810 |
Environmental dependence of genetic constraint
M. de Vos, F. Poelwijk, N. Battich, J. Ndika, S. Tans, PLoS Genetics 9 (2013).
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M. de Vos, F. Poelwijk, N. Battich, J. Ndika, S. Tans, PLoS Genetics 9 (2013).
2013 | Journal Article | IST-REx-ID: 2811 |
Nature of laminar-turbulence intermittency in shear flows
M. Avila, B. Hof, Physical Review E 87 (2013).
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M. Avila, B. Hof, Physical Review E 87 (2013).
2013 | Conference Paper | IST-REx-ID: 2812 |
Homological reconstruction and simplification in R3
D. Attali, U. Bauer, O. Devillers, M. Glisse, A. Lieutier, in:, Proceedings of the 29th Annual Symposium on Computational Geometry, ACM, 2013, pp. 117–125.
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D. Attali, U. Bauer, O. Devillers, M. Glisse, A. Lieutier, in:, Proceedings of the 29th Annual Symposium on Computational Geometry, ACM, 2013, pp. 117–125.
2013 | Journal Article | IST-REx-ID: 2813 |
Elasto-inertial turbulence
D. Samanta, Y. Dubief, M. Holzner, C. Schäfer, A. Morozov, C. Wagner, B. Hof, PNAS 110 (2013) 10557–10562.
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D. Samanta, Y. Dubief, M. Holzner, C. Schäfer, A. Morozov, C. Wagner, B. Hof, PNAS 110 (2013) 10557–10562.
2013 | Journal Article | IST-REx-ID: 2814 |
The complexity of coverage
K. Chatterjee, L. Alfaro, R. Majumdar, International Journal of Foundations of Computer Science 24 (2013) 165–185.
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K. Chatterjee, L. Alfaro, R. Majumdar, International Journal of Foundations of Computer Science 24 (2013) 165–185.
2013 | Journal Article | IST-REx-ID: 2815
Add isotropic Gaussian kernels at own risk: More and more resilient modes in higher dimensions
H. Edelsbrunner, B.T. Fasy, G. Rote, Discrete & Computational Geometry 49 (2013) 797–822.
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H. Edelsbrunner, B.T. Fasy, G. Rote, Discrete & Computational Geometry 49 (2013) 797–822.
2013 | Journal Article | IST-REx-ID: 2816 |
Evolutionary dynamics of cancer in response to targeted combination therapy
I. Božić, J. Reiter, B. Allen, T. Antal, K. Chatterjee, P. Shah, Y. Moon, A. Yaqubie, N. Kelly, D. Le, E. Lipson, P. Chapman, L. Diaz, B. Vogelstein, M. Nowak, ELife 2 (2013).
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I. Božić, J. Reiter, B. Allen, T. Antal, K. Chatterjee, P. Shah, Y. Moon, A. Yaqubie, N. Kelly, D. Le, E. Lipson, P. Chapman, L. Diaz, B. Vogelstein, M. Nowak, ELife 2 (2013).
2013 | Journal Article | IST-REx-ID: 2817 |
Density games
S. Novak, K. Chatterjee, M. Nowak, Journal of Theoretical Biology 334 (2013) 26–34.
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S. Novak, K. Chatterjee, M. Nowak, Journal of Theoretical Biology 334 (2013) 26–34.
2013 | Journal Article | IST-REx-ID: 2818 |
Learning quadratic receptive fields from neural responses to natural stimuli
K. Rajan, O. Marre, G. Tkačik, Neural Computation 25 (2013) 1661–1692.
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K. Rajan, O. Marre, G. Tkačik, Neural Computation 25 (2013) 1661–1692.
2013 | Conference Paper | IST-REx-ID: 2819 |
Quantitative timed simulation functions and refinement metrics for real-time systems
K. Chatterjee, V. Prabhu, in:, Proceedings of the 16th International Conference on Hybrid Systems: Computation and Control, Springer, 2013, pp. 273–282.
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K. Chatterjee, V. Prabhu, in:, Proceedings of the 16th International Conference on Hybrid Systems: Computation and Control, Springer, 2013, pp. 273–282.
2013 | Conference Paper | IST-REx-ID: 2820
Automated analysis of real-time scheduling using graph games
K. Chatterjee, A. Kößler, U. Schmid, in:, Proceedings of the 16th International Conference on Hybrid Systems: Computation and Control, ACM, 2013, pp. 163–172.
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K. Chatterjee, A. Kößler, U. Schmid, in:, Proceedings of the 16th International Conference on Hybrid Systems: Computation and Control, ACM, 2013, pp. 163–172.
2013 | Journal Article | IST-REx-ID: 2821 |
A major facilitator superfamily transporter plays a dual role in polar auxin transport and drought stress tolerance in Arabidopsis
E. Remy, T. Cabrito, P. Baster, R. Batista, M. Teixeira, J. Friml, I. Sá Correia, P. Duque, Plant Cell 25 (2013) 901–926.
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E. Remy, T. Cabrito, P. Baster, R. Batista, M. Teixeira, J. Friml, I. Sá Correia, P. Duque, Plant Cell 25 (2013) 901–926.
2013 | Journal Article | IST-REx-ID: 2822 |
3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture
C. Topp, A. Iyer Pascuzzi, J. Anderson, C. Lee, P. Zurek, O. Symonova, Y. Zheng, A. Bucksch, Y. Mileyko, T. Galkovskyi, B. Moore, J. Harer, H. Edelsbrunner, T. Mitchell Olds, J. Weitz, P. Benfey, PNAS 110 (2013) E1695–E1704.
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C. Topp, A. Iyer Pascuzzi, J. Anderson, C. Lee, P. Zurek, O. Symonova, Y. Zheng, A. Bucksch, Y. Mileyko, T. Galkovskyi, B. Moore, J. Harer, H. Edelsbrunner, T. Mitchell Olds, J. Weitz, P. Benfey, PNAS 110 (2013) E1695–E1704.
2013 | Journal Article | IST-REx-ID: 2823
Post-fire recovery of revegetated woodland communities in south-eastern Australia
M. Pickup, S. Wilson, D. Freudenberger, N. Nicholls, L. Gould, S. Hnatiuk, J. Delandre, Austral Ecology 38 (2013) 300–312.
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M. Pickup, S. Wilson, D. Freudenberger, N. Nicholls, L. Gould, S. Hnatiuk, J. Delandre, Austral Ecology 38 (2013) 300–312.
2013 | Journal Article | IST-REx-ID: 2824
Synthesis of memory-efficient, clock-memory free, and non-Zeno safety controllers for timed systems
K. Chatterjee, V. Prabhu, Information and Computation 228–229 (2013) 83–119.
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K. Chatterjee, V. Prabhu, Information and Computation 228–229 (2013) 83–119.
2013 | Journal Article | IST-REx-ID: 2827 |
Salicylic acid interferes with clathrin-mediated endocytic protein trafficking
Y. Du, R. Tejos, M. Beck, E. Himschoot, H. Li, S. Robatzek, S. Vanneste, J. Friml, PNAS 110 (2013) 7946–7951.
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Y. Du, R. Tejos, M. Beck, E. Himschoot, H. Li, S. Robatzek, S. Vanneste, J. Friml, PNAS 110 (2013) 7946–7951.
2013 | Journal Article | IST-REx-ID: 2828 |
The complexity of conservative valued CSPs
V. Kolmogorov, S. Živný, Journal of the ACM 60 (2013).
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V. Kolmogorov, S. Živný, Journal of the ACM 60 (2013).