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3854 Publications
2010 | Conference Paper | IST-REx-ID: 3782
Topology noise removal for curve and surface evolution
C. Chen, D. Freedman, in:, Conference Proceedings MCV 2010, Springer, 2010, pp. 31–42.
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C. Chen, D. Freedman, in:, Conference Proceedings MCV 2010, Springer, 2010, pp. 31–42.
2010 | Journal Article | IST-REx-ID: 3783
Microsatelight – Pipeline to expedite microsatellite analysis
F. Palero, F. González Candelas, M. Pascual, Journal of Heredity 102 (2010) 247–249.
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F. Palero, F. González Candelas, M. Pascual, Journal of Heredity 102 (2010) 247–249.
2010 | Journal Article | IST-REx-ID: 3785
Genetic diversity levels in fishery-exploited spiny lobsters of the Genus Palinurus (Decapoda: Achelata)
F. Palero, P. Abello, E. Macpherson, C. Matthee, M. Pascual, Journal of Crustacean Biology 30 (2010) 658–663.
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F. Palero, P. Abello, E. Macpherson, C. Matthee, M. Pascual, Journal of Crustacean Biology 30 (2010) 658–663.
2010 | Journal Article | IST-REx-ID: 3786
Final-stage phyllosoma of Palinustus A. Milne-Edwards, 1880 (Crustacea: Decapoda: Achelata: Palinuridae)-The first complete description
F. Palero, G. Guerao, P. Clark, P. Abello, Zootaxa 2403 (2010) 42–58.
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F. Palero, G. Guerao, P. Clark, P. Abello, Zootaxa 2403 (2010) 42–58.
2010 | Journal Article | IST-REx-ID: 3787 | 
DNA extraction from formalin-fixed tissue: new light from the deep sea
F. Palero, S. Hall, P. Clark, D. Johnston, J. Mackenzie Dodds, S. Thatje, Scientia Marina 74 (2010) 465–470.
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F. Palero, S. Hall, P. Clark, D. Johnston, J. Mackenzie Dodds, S. Thatje, Scientia Marina 74 (2010) 465–470.
2010 | Journal Article | IST-REx-ID: 3788
Finite-size corrections to scaling behavior in sorted cell aggregates
A. Klopper, G. Krens, S. Grill, C.-P.J. Heisenberg, The European Physical Journal E: Soft Matter and Biological Physics 33 (2010) 99–103.
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A. Klopper, G. Krens, S. Grill, C.-P.J. Heisenberg, The European Physical Journal E: Soft Matter and Biological Physics 33 (2010) 99–103.
2010 | Journal Article | IST-REx-ID: 3789
Stereotypical cell division orientation controls neural rod midline formation in zebrafish
E. Quesada-Hernández, L. Caneparo, S. Schneider, S. Winkler, M. Liebling, S. Fraser, C.-P.J. Heisenberg, Current Biology 20 (2010) 1966–1972.
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E. Quesada-Hernández, L. Caneparo, S. Schneider, S. Winkler, M. Liebling, S. Fraser, C.-P.J. Heisenberg, Current Biology 20 (2010) 1966–1972.
2010 | Journal Article | IST-REx-ID: 3790 |
Control of directed cell migration in vivo by membrane-to-cortex attachment
A. Diz Muñoz, M. Krieg, M. Bergert, I. Ibarlucea Benitez, D. Müller, E. Paluch, C.-P.J. Heisenberg, PLoS Biology 8 (2010).
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A. Diz Muñoz, M. Krieg, M. Bergert, I. Ibarlucea Benitez, D. Müller, E. Paluch, C.-P.J. Heisenberg, PLoS Biology 8 (2010).
2010 | Conference Paper | IST-REx-ID: 3793 |
On parameter learning in CRF-based approaches to object class image segmentation
S. Nowozin, P. Gehler, C. Lampert, in:, Springer, 2010, pp. 98–111.
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S. Nowozin, P. Gehler, C. Lampert, in:, Springer, 2010, pp. 98–111.
2010 | Conference Paper | IST-REx-ID: 3794
Weakly-paired maximum covariance analysis for multimodal dimensionality reduction and transfer learning
C. Lampert, O. Krömer, in:, Springer, 2010, pp. 566–579.
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C. Lampert, O. Krömer, in:, Springer, 2010, pp. 566–579.
2010 | Book Chapter | IST-REx-ID: 3795 |
The stability of the apparent contour of an orientable 2-manifold
H. Edelsbrunner, D. Morozov, A. Patel, in:, Topological Data Analysis and Visualization: Theory, Algorithms and Applications, Springer, 2010, pp. 27–42.
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H. Edelsbrunner, D. Morozov, A. Patel, in:, Topological Data Analysis and Visualization: Theory, Algorithms and Applications, Springer, 2010, pp. 27–42.
2010 | Journal Article | IST-REx-ID: 3832 |
Beyond TARPs: The growing list of auxiliary AMPAR subunits
J. Guzmán, P.M. Jonas, Neuron 66 (2010) 8–10.
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| PubMed | Europe PMC
J. Guzmán, P.M. Jonas, Neuron 66 (2010) 8–10.
2010 | Journal Article | IST-REx-ID: 3833
GABA release at terminals of CCK-interneurons: synchrony, asynchrony and modulation by cannabinoid receptors (commentary on Ali & Todorova)
P.M. Jonas, S. Hefft, The European Journal of Neuroscience 31 (2010) 1194–1195.
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P.M. Jonas, S. Hefft, The European Journal of Neuroscience 31 (2010) 1194–1195.
2010 | Journal Article | IST-REx-ID: 3834 |
Solving the chemical master equation using sliding windows
V. Wolf, R. Goel, M. Mateescu, T.A. Henzinger, BMC Systems Biology 4 (2010) 1–19.
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V. Wolf, R. Goel, M. Mateescu, T.A. Henzinger, BMC Systems Biology 4 (2010) 1–19.
2010 | Conference Paper | IST-REx-ID: 3838 |
Hybrid numerical solution of the chemical master equation
T.A. Henzinger, M. Mateescu, L. Mikeev, V. Wolf, in:, Springer, 2010, pp. 55–65.
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T.A. Henzinger, M. Mateescu, L. Mikeev, V. Wolf, in:, Springer, 2010, pp. 55–65.
2010 | Conference Paper | IST-REx-ID: 3839 |
Invariant and type inference for matrices
T.A. Henzinger, T. Hottelier, L. Kovács, A. Voronkov, in:, Springer, 2010, pp. 163–179.
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T.A. Henzinger, T. Hottelier, L. Kovács, A. Voronkov, in:, Springer, 2010, pp. 163–179.
2010 | Conference Paper | IST-REx-ID: 3840
From boolean to quantitative notions of correctness
T.A. Henzinger, in:, ACM, 2010, pp. 157–158.
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T.A. Henzinger, in:, ACM, 2010, pp. 157–158.
2010 | Journal Article | IST-REx-ID: 3842 |
Fast adaptive uniformization of the chemical master equation
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, IET Systems Biology 4 (2010) 441–452.
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F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, IET Systems Biology 4 (2010) 441–452.
2010 | Conference Paper | IST-REx-ID: 3845 |
Aligators for arrays
T.A. Henzinger, T. Hottelier, L. Kovács, A. Rybalchenko, in:, Springer, 2010, pp. 348–356.
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T.A. Henzinger, T. Hottelier, L. Kovács, A. Rybalchenko, in:, Springer, 2010, pp. 348–356.
2010 | Conference Paper | IST-REx-ID: 3847 |
SABRE: A tool for the stochastic analysis of biochemical reaction networks
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2010, pp. 193–194.
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F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2010, pp. 193–194.
2010 | Conference Paper | IST-REx-ID: 3848
The robustness of level sets
P. Bendich, H. Edelsbrunner, D. Morozov, A. Patel, in:, Springer, 2010, pp. 1–10.
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P. Bendich, H. Edelsbrunner, D. Morozov, A. Patel, in:, Springer, 2010, pp. 1–10.
2010 | Conference Paper | IST-REx-ID: 3849 |
Persistent homology under non-uniform error
P. Bendich, H. Edelsbrunner, M. Kerber, A. Patel, in:, Springer, 2010, pp. 12–23.
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P. Bendich, H. Edelsbrunner, M. Kerber, A. Patel, in:, Springer, 2010, pp. 12–23.
2010 | Conference Paper | IST-REx-ID: 3850
Polygonal reconstruction from approximate offsets
E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, in:, TU Dortmund, 2010, pp. 12–23.
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E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, in:, TU Dortmund, 2010, pp. 12–23.
2010 | Conference Paper | IST-REx-ID: 3851 |
Energy parity games
K. Chatterjee, L. Doyen, in:, Springer, 2010, pp. 599–610.
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| arXiv
K. Chatterjee, L. Doyen, in:, Springer, 2010, pp. 599–610.
2010 | Conference Paper | IST-REx-ID: 3852 |
Discounting in games across time scales
K. Chatterjee, R. Majumdar, in:, EPTCS, 2010, pp. 22–29.
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| arXiv
K. Chatterjee, R. Majumdar, in:, EPTCS, 2010, pp. 22–29.
2010 | Conference Paper | IST-REx-ID: 3853 |
Mean-payoff automaton expressions
K. Chatterjee, L. Doyen, H. Edelsbrunner, T.A. Henzinger, P. Rannou, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 269–283.
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K. Chatterjee, L. Doyen, H. Edelsbrunner, T.A. Henzinger, P. Rannou, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 269–283.
2010 | Conference Paper | IST-REx-ID: 3854
Obliging games
K. Chatterjee, F. Horn, C. Löding, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 284–296.
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K. Chatterjee, F. Horn, C. Löding, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 284–296.
2010 | Conference Paper | IST-REx-ID: 3855 |
Qualitative analysis of partially-observable Markov Decision Processes
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2010, pp. 258–269.
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K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2010, pp. 258–269.
2010 | Conference Paper | IST-REx-ID: 3856 |
Randomness for free
K. Chatterjee, L. Doyen, H. Gimbert, T.A. Henzinger, in:, Springer, 2010, pp. 246–257.
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K. Chatterjee, L. Doyen, H. Gimbert, T.A. Henzinger, in:, Springer, 2010, pp. 246–257.
2010 | Conference Paper | IST-REx-ID: 3857
Probabilistic Automata on infinite words: decidability and undecidability results
K. Chatterjee, T.A. Henzinger, in:, Springer, 2010, pp. 1–16.
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K. Chatterjee, T.A. Henzinger, in:, Springer, 2010, pp. 1–16.
2010 | Conference Paper | IST-REx-ID: 3858 |
The complexity of partial-observation parity games
K. Chatterjee, L. Doyen, in:, Springer, 2010, pp. 1–14.
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K. Chatterjee, L. Doyen, in:, Springer, 2010, pp. 1–14.
2010 | Conference (Editor) | IST-REx-ID: 3859
Formal modeling and analysis of timed systems
K. Chatterjee, T.A. Henzinger, eds., Formal Modeling and Analysis of Timed Systems, Springer, 2010.
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K. Chatterjee, T.A. Henzinger, eds., Formal Modeling and Analysis of Timed Systems, Springer, 2010.
2010 | Conference Paper | IST-REx-ID: 3860 |
Generalized mean-payoff and energy games
K. Chatterjee, L. Doyen, T.A. Henzinger, J. Raskin, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 505–516.
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K. Chatterjee, L. Doyen, T.A. Henzinger, J. Raskin, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 505–516.
2010 | Journal Article | IST-REx-ID: 3861 |
Strategy logic
K. Chatterjee, T.A. Henzinger, N. Piterman, Information and Computation 208 (2010) 677–693.
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K. Chatterjee, T.A. Henzinger, N. Piterman, Information and Computation 208 (2010) 677–693.
2010 | Journal Article | IST-REx-ID: 3863 |
Strategy construction for parity games with imperfect information
D. Berwanger, K. Chatterjee, M. De Wulf, L. Doyen, T.A. Henzinger, Information and Computation 208 (2010) 1206–1220.
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D. Berwanger, K. Chatterjee, M. De Wulf, L. Doyen, T.A. Henzinger, Information and Computation 208 (2010) 1206–1220.
2010 | Conference Paper | IST-REx-ID: 3864 |
Measuring and synthesizing systems in probabilistic environments
K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, in:, Springer, 2010, pp. 380–395.
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K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, in:, Springer, 2010, pp. 380–395.
2010 | Conference Paper | IST-REx-ID: 3865
Analyzing the impact of change in multi-threaded programs
K. Chatterjee, L. De Alfaro, V. Raman, C. Sánchez, in:, D. Rosenblum, G. Taenzer (Eds.), Springer, 2010, pp. 293–307.
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K. Chatterjee, L. De Alfaro, V. Raman, C. Sánchez, in:, D. Rosenblum, G. Taenzer (Eds.), Springer, 2010, pp. 293–307.
2010 | Conference Paper | IST-REx-ID: 3866 |
Robustness in the presence of liveness
R. Bloem, K. Chatterjee, K. Greimel, T.A. Henzinger, B. Jobstmann, in:, T. Touili, B. Cook, P. Jackson (Eds.), Springer, 2010, pp. 410–424.
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R. Bloem, K. Chatterjee, K. Greimel, T.A. Henzinger, B. Jobstmann, in:, T. Touili, B. Cook, P. Jackson (Eds.), Springer, 2010, pp. 410–424.
2010 | Journal Article | IST-REx-ID: 3867 |
Expressiveness and closure properties for quantitative languages
K. Chatterjee, L. Doyen, T.A. Henzinger, Logical Methods in Computer Science 6 (2010) 1–23.
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K. Chatterjee, L. Doyen, T.A. Henzinger, Logical Methods in Computer Science 6 (2010) 1–23.
2010 | Journal Article | IST-REx-ID: 3868 |
Algorithms for game metrics
K. Chatterjee, L. De Alfaro, R. Majumdar, V. Raman, Logical Methods in Computer Science 6 (2010) 1–27.
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K. Chatterjee, L. De Alfaro, R. Majumdar, V. Raman, Logical Methods in Computer Science 6 (2010) 1–27.
2010 | Journal Article | IST-REx-ID: 3901 |
Computing robustness and persistence for images
P. Bendich, H. Edelsbrunner, M. Kerber, IEEE Transactions of Visualization and Computer Graphics 16 (2010) 1251–1260.
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P. Bendich, H. Edelsbrunner, M. Kerber, IEEE Transactions of Visualization and Computer Graphics 16 (2010) 1251–1260.
2010 | Thesis | IST-REx-ID: 3962
Dendritic cell migration across basement membranes in the skin
H. Pflicke, Dendritic Cell Migration across Basement Membranes in the Skin, IST Austria, 2010.
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H. Pflicke, Dendritic Cell Migration across Basement Membranes in the Skin, IST Austria, 2010.
2010 | Journal Article | IST-REx-ID: 4134
Why is adaptation prevented at ecological margins? New insights from individual-based simulations
J. Bridle, J. Polechova, M. Kawata, R. Butlin, Ecology Letters 13 (2010) 485–494.
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J. Bridle, J. Polechova, M. Kawata, R. Butlin, Ecology Letters 13 (2010) 485–494.
2010 | Journal Article | IST-REx-ID: 4157 |
Spatial organization of adhesion: force-dependent regulation and function in tissue morphogenesis
E. Papusheva, C.-P.J. Heisenberg, EMBO Journal 29 (2010) 2753–2768.
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| PubMed | Europe PMC
E. Papusheva, C.-P.J. Heisenberg, EMBO Journal 29 (2010) 2753–2768.
2010 | Journal Article | IST-REx-ID: 4243 |
A new model for evolution in a spatial continuum
N.H. Barton, A. Etheridge, A. Véber, Electronic Journal of Probability 15 (2010) 162–216.
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N.H. Barton, A. Etheridge, A. Véber, Electronic Journal of Probability 15 (2010) 162–216.
2010 | Conference Paper | IST-REx-ID: 4361 |
Forward analysis of depth-bounded processes
T. Wies, D. Zufferey, T.A. Henzinger, in:, L. Ong (Ed.), Springer, 2010, pp. 94–108.
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T. Wies, D. Zufferey, T.A. Henzinger, in:, L. Ong (Ed.), Springer, 2010, pp. 94–108.
2010 | Conference Paper | IST-REx-ID: 4362
Runtime verification for software transactional memories
V. Singh, in:, O. Sokolsky, G. Rosu, N. Tilmann, H. Barringer, Y. Falcone, B. Finkbeiner, K. Havelund, I. Lee, G. Pace (Eds.), Springer, 2010, pp. 421–435.
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V. Singh, in:, O. Sokolsky, G. Rosu, N. Tilmann, H. Barringer, Y. Falcone, B. Finkbeiner, K. Havelund, I. Lee, G. Pace (Eds.), Springer, 2010, pp. 421–435.
2010 | Conference Paper | IST-REx-ID: 4369 |
From MTL to deterministic timed automata
D. Nickovic, N. Piterman, in:, T.A. Henzinger, K. Chatterjee (Eds.), Springer, 2010, pp. 152–167.
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D. Nickovic, N. Piterman, in:, T.A. Henzinger, K. Chatterjee (Eds.), Springer, 2010, pp. 152–167.
2010 | Conference Paper | IST-REx-ID: 4378 |
Building a calculus of data structures
V. Kuncak, R. Piskac, P. Suter, T. Wies, in:, G. Barthe, M. Hermenegildo (Eds.), Springer, 2010, pp. 26–44.
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V. Kuncak, R. Piskac, P. Suter, T. Wies, in:, G. Barthe, M. Hermenegildo (Eds.), Springer, 2010, pp. 26–44.
2010 | Conference Paper | IST-REx-ID: 4380 |
A marketplace for cloud resources
T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, ACM, 2010, pp. 1–8.
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T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, ACM, 2010, pp. 1–8.
2010 | Conference Paper | IST-REx-ID: 4381 |
FlexPRICE: Flexible provisioning of resources in a cloud environment
T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, IEEE, 2010, pp. 83–90.
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T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, IEEE, 2010, pp. 83–90.
2010 | Conference Paper | IST-REx-ID: 4382 |
Transactions in the jungle
R. Guerraoui, T.A. Henzinger, M. Kapalka, V. Singh, in:, ACM, 2010, pp. 263–272.
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R. Guerraoui, T.A. Henzinger, M. Kapalka, V. Singh, in:, ACM, 2010, pp. 263–272.
2010 | Conference Paper | IST-REx-ID: 4388 |
GIST: A solver for probabilistic games
K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, in:, Springer, 2010, pp. 665–669.
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| arXiv
K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, in:, Springer, 2010, pp. 665–669.
2010 | Conference Paper | IST-REx-ID: 4389 |
Robustness of sequential circuits
L. Doyen, T.A. Henzinger, A. Legay, D. Nickovic, in:, IEEE, 2010, pp. 77–84.
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L. Doyen, T.A. Henzinger, A. Legay, D. Nickovic, in:, IEEE, 2010, pp. 77–84.
2010 | Conference Paper | IST-REx-ID: 4390 |
Model checking of linearizability of concurrent list implementations
P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, R. Alur, in:, Springer, 2010, pp. 465–479.
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P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, R. Alur, in:, Springer, 2010, pp. 465–479.
2010 | Book Chapter | IST-REx-ID: 4392
Quantitative Simulation Games
P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Z. Manna, D. Peled (Eds.), Time For Verification: Essays in Memory of Amir Pnueli, Springer, 2010, pp. 42–60.
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P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Z. Manna, D. Peled (Eds.), Time For Verification: Essays in Memory of Amir Pnueli, Springer, 2010, pp. 42–60.
2010 | Conference Paper | IST-REx-ID: 4393 |
Simulation distances
P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 235–268.
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P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 235–268.
2010 | Conference Paper | IST-REx-ID: 4396 |
Shape refinement through explicit heap analysis
D. Beyer, T.A. Henzinger, G. Théoduloz, D. Zufferey, in:, D. Rosenblum, G. Taenzer (Eds.), Springer, 2010, pp. 263–277.
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D. Beyer, T.A. Henzinger, G. Théoduloz, D. Zufferey, in:, D. Rosenblum, G. Taenzer (Eds.), Springer, 2010, pp. 263–277.
2010 | Conference Paper | IST-REx-ID: 10909
Hardness results for homology localization
C. Chen, D. Freedman, in:, Proceedings of the 2010 Annual ACM-SIAM Symposium on Discrete Algorithms, Society for Industrial and Applied Mathematics, 2010, pp. 1594–1604.
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C. Chen, D. Freedman, in:, Proceedings of the 2010 Annual ACM-SIAM Symposium on Discrete Algorithms, Society for Industrial and Applied Mathematics, 2010, pp. 1594–1604.
2010 | Conference Paper | IST-REx-ID: 10908 |
ABC: Algebraic Bound Computation for loops
R. Blanc, T.A. Henzinger, T. Hottelier, L. Kovács, in:, E.M. Clarke, A. Voronkov (Eds.), Logic for Programming, Artificial Intelligence, and Reasoning, Springer Nature, Berlin, Heidelberg, 2010, pp. 103–118.
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R. Blanc, T.A. Henzinger, T. Hottelier, L. Kovács, in:, E.M. Clarke, A. Voronkov (Eds.), Logic for Programming, Artificial Intelligence, and Reasoning, Springer Nature, Berlin, Heidelberg, 2010, pp. 103–118.
2009 | Conference Paper | IST-REx-ID: 4542 |
Alternating weighted automata
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 3–13.
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K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 3–13.
2009 | Conference Paper | IST-REx-ID: 4543
Stochastic games with finitary objectives
K. Chatterjee, T.A. Henzinger, F. Horn, in:, Springer, 2009, pp. 34–54.
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K. Chatterjee, T.A. Henzinger, F. Horn, in:, Springer, 2009, pp. 34–54.
2009 | Conference Paper | IST-REx-ID: 4545 |
A survey of stochastic games with limsup and liminf objectives
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 1–15.
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K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 1–15.
2009 | Conference Paper | IST-REx-ID: 4569 |
Better quality in synthesis through quantitative objectives
R. Bloem, K. Chatterjee, T.A. Henzinger, B. Jobstmann, in:, Springer, 2009, pp. 140–156.
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| arXiv
R. Bloem, K. Chatterjee, T.A. Henzinger, B. Jobstmann, in:, Springer, 2009, pp. 140–156.
2009 | Technical Report | IST-REx-ID: 5392 |
Probabilistic automata on infinite words: Decidability and undecidability results
K. Chatterjee, Probabilistic Automata on Infinite Words: Decidability and Undecidability Results, IST Austria, 2009.
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| DOI
K. Chatterjee, Probabilistic Automata on Infinite Words: Decidability and Undecidability Results, IST Austria, 2009.
2009 | Technical Report | IST-REx-ID: 5393 |
Gist: A solver for probabilistic games
K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, Gist: A Solver for Probabilistic Games, IST Austria, 2009.
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K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, Gist: A Solver for Probabilistic Games, IST Austria, 2009.
2009 | Technical Report | IST-REx-ID: 5394 |
Improved lower bounds for request-response and finitary Streett games
K. Chatterjee, T.A. Henzinger, F. Horn, Improved Lower Bounds for Request-Response and Finitary Streett Games, IST Austria, 2009.
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K. Chatterjee, T.A. Henzinger, F. Horn, Improved Lower Bounds for Request-Response and Finitary Streett Games, IST Austria, 2009.
2009 | Technical Report | IST-REx-ID: 5395 |
Qualitative analysis of partially-observable Markov decision processes
K. Chatterjee, L. Doyen, T.A. Henzinger, Qualitative Analysis of Partially-Observable Markov Decision Processes, IST Austria, 2009.
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| Files available
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K. Chatterjee, L. Doyen, T.A. Henzinger, Qualitative Analysis of Partially-Observable Markov Decision Processes, IST Austria, 2009.
2009 | Journal Article | IST-REx-ID: 9453 |
Genome-wide demethylation of Arabidopsis endosperm
T.-F. Hsieh, C.A. Ibarra, P. Silva, A. Zemach, L. Eshed-Williams, R.L. Fischer, D. Zilberman, Science 324 (2009) 1451–1454.
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T.-F. Hsieh, C.A. Ibarra, P. Silva, A. Zemach, L. Eshed-Williams, R.L. Fischer, D. Zilberman, Science 324 (2009) 1451–1454.
2009 | Book Chapter | IST-REx-ID: 3675
Why sex and recombination?
N.H. Barton, in:, Cold Spring Harbor Symposia on Quantitative Biology, Cold Spring Harbor Laboratory Press, 2009, pp. 187–195.
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| DOI
N.H. Barton, in:, Cold Spring Harbor Symposia on Quantitative Biology, Cold Spring Harbor Laboratory Press, 2009, pp. 187–195.
2009 | Journal Article | IST-REx-ID: 3775 |
On the application of statistical physics to evolutionary biology
N.H. Barton, J. Coe, Journal of Theoretical Biology 259 (2009) 317–324.
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N.H. Barton, J. Coe, Journal of Theoretical Biology 259 (2009) 317–324.
2009 | Journal Article | IST-REx-ID: 3780 |
The effect of chirality phenotype and genotype on the fecundity and viability of Partula suturalis and Lymnaea stagnalis: Implications for the evolution of sinistral snails
A. Davison, N.H. Barton, B. Clarke, Journal of Evolutionary Biology 22 (2009) 1624–1635.
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A. Davison, N.H. Barton, B. Clarke, Journal of Evolutionary Biology 22 (2009) 1624–1635.
2009 | Conference Paper | IST-REx-ID: 3837 |
On relational interfaces
S. Tripakis, B. Lickly, T.A. Henzinger, E. Lee, in:, EMSOFT ’09 Proceedings of the Seventh ACM International Conference on Embedded Software, ACM, 2009, pp. 67–76.
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S. Tripakis, B. Lickly, T.A. Henzinger, E. Lee, in:, EMSOFT ’09 Proceedings of the Seventh ACM International Conference on Embedded Software, ACM, 2009, pp. 67–76.
2009 | Conference Paper | IST-REx-ID: 3841 |
Formalisms for specifying Markovian population models
T.A. Henzinger, B. Jobstmann, V. Wolf, in:, Springer, 2009, pp. 3–23.
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T.A. Henzinger, B. Jobstmann, V. Wolf, in:, Springer, 2009, pp. 3–23.
2009 | Conference Paper | IST-REx-ID: 3843 |
Fast adaptive uniformization of the chemical master equation
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2009, pp. 118–127.
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F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2009, pp. 118–127.
2009 | Conference Paper | IST-REx-ID: 3844 |
Distributed, modular HTL
T.A. Henzinger, C. Kirsch, E. Marques, A. Sokolova, in:, IEEE, 2009, pp. 171–180.
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T.A. Henzinger, C. Kirsch, E. Marques, A. Sokolova, in:, IEEE, 2009, pp. 171–180.
2009 | Journal Article | IST-REx-ID: 3870 |
Finitary winning in omega-regular games
K. Chatterjee, T.A. Henzinger, F. Horn, ACM Transactions on Computational Logic (TOCL) 11 (2009).
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K. Chatterjee, T.A. Henzinger, F. Horn, ACM Transactions on Computational Logic (TOCL) 11 (2009).
2009 | Conference Paper | IST-REx-ID: 3871 |
Probabilistic weighted automata
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 244–258.
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K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 244–258.
2009 | Conference Paper | IST-REx-ID: 3968 |
The persistent Morse complex segmentation of a 3-manifold
H. Edelsbrunner, J. Harer, in:, Springer, 2009, pp. 36–50.
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H. Edelsbrunner, J. Harer, in:, Springer, 2009, pp. 36–50.
2009 | Journal Article | IST-REx-ID: 4136 |
Species' range: Adaptation in space and time
J. Polechova, N.H. Barton, G. Marion, American Naturalist 174 (2009) E186–E204.
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J. Polechova, N.H. Barton, G. Marion, American Naturalist 174 (2009) E186–E204.
2009 | Journal Article | IST-REx-ID: 4231
Statistical mechanics and the evolution of polygenic quantitative traits
N.H. Barton, H. De Vladar, Genetics 181 (2009) 997–1011.
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N.H. Barton, H. De Vladar, Genetics 181 (2009) 997–1011.
2009 | Journal Article | IST-REx-ID: 4242 |
The evolution of strong reproductive isolation
N.H. Barton, M. De Cara, Evolution; International Journal of Organic Evolution 63 (2009) 1171–1190.
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| DOI
N.H. Barton, M. De Cara, Evolution; International Journal of Organic Evolution 63 (2009) 1171–1190.
2008 | Journal Article | IST-REx-ID: 517
Identity and coalescence in structured populations: A commentary on 'Inbreeding coefficients and coalescence times' by Montgomery Slatkin
N.H. Barton, Genetical Research 89 (2008) 475–477.
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N.H. Barton, Genetical Research 89 (2008) 475–477.
2008 | Journal Article | IST-REx-ID: 9457 |
Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
D. Zilberman, D. Coleman-Derr, T. Ballinger, S. Henikoff, Nature 456 (2008) 125–129.
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D. Zilberman, D. Coleman-Derr, T. Ballinger, S. Henikoff, Nature 456 (2008) 125–129.
2008 | Journal Article | IST-REx-ID: 9537
The evolving functions of DNA methylation
D. Zilberman, Current Opinion in Plant Biology 11 (2008) 554–559.
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| DOI
| PubMed | Europe PMC
D. Zilberman, Current Opinion in Plant Biology 11 (2008) 554–559.
2007 | Journal Article | IST-REx-ID: 9487 |
DNA demethylation in the Arabidopsis genome
J. Penterman, D. Zilberman, J.H. Huh, T. Ballinger, S. Henikoff, R.L. Fischer, Proceedings of the National Academy of Sciences 104 (2007) 6752–6757.
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J. Penterman, D. Zilberman, J.H. Huh, T. Ballinger, S. Henikoff, R.L. Fischer, Proceedings of the National Academy of Sciences 104 (2007) 6752–6757.
2007 | Other Publication | IST-REx-ID: 9504
The human promoter methylome
D. Zilberman, The Human Promoter Methylome, Nature Publishing Group, 2007.
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| PubMed | Europe PMC
D. Zilberman, The Human Promoter Methylome, Nature Publishing Group, 2007.
2007 | Journal Article | IST-REx-ID: 9524 |
Genome-wide analysis of DNA methylation patterns
D. Zilberman, S. Henikoff, Development 134 (2007) 3959–3965.
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D. Zilberman, S. Henikoff, Development 134 (2007) 3959–3965.
2006 | Journal Article | IST-REx-ID: 9505
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
D. Zilberman, M. Gehring, R.K. Tran, T. Ballinger, S. Henikoff, Nature Genetics 39 (2006) 61–69.
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| PubMed | Europe PMC
D. Zilberman, M. Gehring, R.K. Tran, T. Ballinger, S. Henikoff, Nature Genetics 39 (2006) 61–69.
2005 | Journal Article | IST-REx-ID: 9491 |
DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes
R.K. Tran, J.G. Henikoff, D. Zilberman, R.F. Ditt, S.E. Jacobsen, S. Henikoff, Current Biology 15 (2005) 154–159.
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R.K. Tran, J.G. Henikoff, D. Zilberman, R.F. Ditt, S.E. Jacobsen, S. Henikoff, Current Biology 15 (2005) 154–159.
2005 | Journal Article | IST-REx-ID: 9514 |
Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis
R.K. Tran, D. Zilberman, C. de Bustos, R.F. Ditt, J.G. Henikoff, A.M. Lindroth, J. Delrow, T. Boyle, S. Kwong, T.D. Bryson, S.E. Jacobsen, S. Henikoff, Genome Biology 6 (2005).
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R.K. Tran, D. Zilberman, C. de Bustos, R.F. Ditt, J.G. Henikoff, A.M. Lindroth, J. Delrow, T. Boyle, S. Kwong, T.D. Bryson, S.E. Jacobsen, S. Henikoff, Genome Biology 6 (2005).
2005 | Journal Article | IST-REx-ID: 9529
Epigenetic inheritance in Arabidopsis: Selective silence
D. Zilberman, S. Henikoff, Current Opinion in Genetics and Development 15 (2005) 557–562.
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| PubMed | Europe PMC
D. Zilberman, S. Henikoff, Current Opinion in Genetics and Development 15 (2005) 557–562.
2004 | Journal Article | IST-REx-ID: 9454
RNA silencing genes control de novo DNA methylation
S.W.-L. Chan, D. Zilberman, Zhixin Xie, Lisa K. Johansen, J.C. Carrington, S.E. Jacobsen, Science 303 (2004) 1336.
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S.W.-L. Chan, D. Zilberman, Zhixin Xie, Lisa K. Johansen, J.C. Carrington, S.E. Jacobsen, Science 303 (2004) 1336.
2004 | Journal Article | IST-REx-ID: 9493 |
Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats
D. Zilberman, X. Cao, L.K. Johansen, Z. Xie, J.C. Carrington, S.E. Jacobsen, Current Biology 14 (2004) 1214–1220.
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D. Zilberman, X. Cao, L.K. Johansen, Z. Xie, J.C. Carrington, S.E. Jacobsen, Current Biology 14 (2004) 1214–1220.
2004 | Journal Article | IST-REx-ID: 9511 |
Silencing of transposons in plant genomes: kick them when they're down
D. Zilberman, S. Henikoff, Genome Biology 5 (2004).
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D. Zilberman, S. Henikoff, Genome Biology 5 (2004).
2004 | Journal Article | IST-REx-ID: 9517 |
Genetic and functional diversification of small RNA pathways in plants
Z. Xie, L.K. Johansen, A.M. Gustafson, K.D. Kasschau, A.D. Lellis, D. Zilberman, S.E. Jacobsen, J.C. Carrington, PLoS Biology 2 (2004) 0642–0652.
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Z. Xie, L.K. Johansen, A.M. Gustafson, K.D. Kasschau, A.D. Lellis, D. Zilberman, S.E. Jacobsen, J.C. Carrington, PLoS Biology 2 (2004) 0642–0652.
2003 | Journal Article | IST-REx-ID: 9455
ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation
D. Zilberman, Xiaofeng Cao, S.E. Jacobsen, Science 299 (2003) 716–719.
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| PubMed | Europe PMC
D. Zilberman, Xiaofeng Cao, S.E. Jacobsen, Science 299 (2003) 716–719.
2003 | Journal Article | IST-REx-ID: 9495 |
Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation
X. Cao, W. Aufsatz, D. Zilberman, M.F. Mette, M.S. Huang, M. Matzke, S.E. Jacobsen, Current Biology 13 (2003) 2212–2217.
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X. Cao, W. Aufsatz, D. Zilberman, M.F. Mette, M.S. Huang, M. Matzke, S.E. Jacobsen, Current Biology 13 (2003) 2212–2217.
2001 | Journal Article | IST-REx-ID: 9444
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation
A.M. Lindroth, X. Cao, J.P. Jackson, D. Zilberman, C.M. McCallum, S. Henikoff, S.E. Jacobsen, Science 292 (2001) 2077–2080.
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| PubMed | Europe PMC
A.M. Lindroth, X. Cao, J.P. Jackson, D. Zilberman, C.M. McCallum, S. Henikoff, S.E. Jacobsen, Science 292 (2001) 2077–2080.