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172 Publications

2019 | Journal Article | IST-REx-ID: 6089 | OA
Fraisse, Christelle, Gemma Puixeu Sala, and Beatriz Vicoso. “Pleiotropy Modulates the Efficacy of Selection in Drosophila Melanogaster.” Molecular Biology and Evolution 36, no. 3 (2019): 500–515. https://doi.org/10.1093/molbev/msy246.
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2019 | Journal Article | IST-REx-ID: 6090 | OA
Carballo-Pacheco, Martín, Jonathan Desponds, Tatyana Gavrilchenko, Andreas Mayer, Roshan Prizak, Gautam Reddy, Ilya Nemenman, and Thierry Mora. “Receptor Crosstalk Improves Concentration Sensing of Multiple Ligands.” Physical Review E 99, no. 2 (2019). https://doi.org/10.1103/PhysRevE.99.022423.
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2019 | Journal Article | IST-REx-ID: 6095 | OA
Faria, Rui, Pragya Chaube, Hernán E. Morales, Tomas Larsson, Alan R. Lemmon, Emily M. Lemmon, Marina Rafajlović, et al. “Multiple Chromosomal Rearrangements in a Hybrid Zone between Littorina Saxatilis Ecotypes.” Molecular Ecology 28, no. 6 (2019): 1375–93. https://doi.org/10.1111/mec.14972.
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2019 | Journal Article | IST-REx-ID: 6230 | OA
Barton, Nicholas H, Joachim Hermisson, and Magnus Nordborg. “Why Structure Matters.” ELife 8 (2019). https://doi.org/10.7554/eLife.45380.
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2019 | Journal Article | IST-REx-ID: 6466 | OA
Field, David, and Christelle Fraisse. “Breaking down Barriers in Morning Glories.” Molecular Ecology 28, no. 7 (2019): 1579–81. https://doi.org/10.1111/mec.15048.
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2019 | Journal Article | IST-REx-ID: 6467
Fraisse, Christelle, and John J. Welch. “The Distribution of Epistasis on Simple Fitness Landscapes.” Biology Letters 15, no. 4 (2019): 0881. https://doi.org/10.1098/rsbl.2018.0881.
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2019 | Journal Article | IST-REx-ID: 6637 | OA
Trubenova, Barbora, Martin Krejca, Per Kristian Lehre, and Timo Kötzing. “Surfing on the Seascape: Adaptation in a Changing Environment.” Evolution 73, no. 7 (2019): 1356–74. https://doi.org/10.1111/evo.13784.
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2019 | Journal Article | IST-REx-ID: 6680 | OA
Sachdeva, Himani. “Effect of Partial Selfing and Polygenic Selection on Establishment in a New Habitat.” Evolution 73, no. 9 (2019): 1729–45. https://doi.org/10.1111/evo.13812.
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2019 | Journal Article | IST-REx-ID: 6713 | OA
Castro, João Pl, Michelle N. Yancoskie, Marta Marchini, Stefanie Belohlavy, Layla Hiramatsu, Marek Kučka, William H. Beluch, et al. “An Integrative Genomic Analysis of the Longshanks Selection Experiment for Longer Limbs in Mice.” ELife 8 (2019). https://doi.org/10.7554/eLife.42014.
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2019 | Journal Article | IST-REx-ID: 6831 | OA
Puixeu Sala, Gemma, Melinda Pickup, David Field, and Spencer C.H. Barrett. “Variation in Sexual Dimorphism in a Wind-Pollinated Plant: The Influence of Geographical Context and Life-Cycle Dynamics.” New Phytologist 224, no. 3 (2019): 1108–20. https://doi.org/10.1111/nph.16050.
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2019 | Journal Article | IST-REx-ID: 6855 | OA
Sella, Guy, and Nicholas H Barton. “Thinking about the Evolution of Complex Traits in the Era of Genome-Wide Association Studies.” Annual Review of Genomics and Human Genetics 20 (2019): 461–93. https://doi.org/10.1146/annurev-genom-083115-022316.
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2019 | Journal Article | IST-REx-ID: 6856 | OA
Pickup, Melinda, Nicholas H Barton, Yaniv Brandvain, Christelle Fraisse, Sarah Yakimowski, Tanmay Dixit, Christian Lexer, Eva Cereghetti, and David Field. “Mating System Variation in Hybrid Zones: Facilitation, Barriers and Asymmetries to Gene Flow.” New Phytologist 224, no. 3 (2019): 1035–47. https://doi.org/10.1111/nph.16180.
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2019 | Journal Article | IST-REx-ID: 6857 | OA
Giese, B, J L Friess, M F Schetelig, Nicholas H Barton, Philip Messer, Florence Debarre, H Meimberg, N Windbichler, and C Boete. “Gene Drives: Dynamics and Regulatory Matters – A Report from the Workshop ‘Evaluation of Spatial and Temporal Control of Gene Drives’, 4 – 5 April 2019, Vienna.” BioEssays 41, no. 11 (2019). https://doi.org/10.1002/bies.201900151.
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2019 | Journal Article | IST-REx-ID: 6858
Barton, Nicholas H. “Is Speciation Driven by Cycles of Mixing and Isolation?” National Science Review 6, no. 2 (2019): 291–92. https://doi.org/10.1093/nsr/nwy113.
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2019 | Journal Article | IST-REx-ID: 6795 | OA
Trubenova, Barbora, and Reinmar Hager. “Green Beards in the Light of Indirect Genetic Effects.” Ecology and Evolution 9, no. 17 (2019): 9597–9608. https://doi.org/10.1002/ece3.5484.
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2019 | Journal Article | IST-REx-ID: 7205
Johannesson, Kerstin, Zuzanna Zagrodzka, Rui Faria, Anja M Westram, and Roger K. Butlin. “Is Embryo Abortion a Post-Zygotic Barrier to Gene Flow between Littorina Ecotypes?” Journal of Evolutionary Biology, 2019. https://doi.org/10.1111/jeb.13570.
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2019 | Journal Article | IST-REx-ID: 7393 | OA
Morales, Hernán E., Rui Faria, Kerstin Johannesson, Tomas Larsson, Marina Panova, Anja M Westram, and Roger K. Butlin. “Genomic Architecture of Parallel Ecological Divergence: Beyond a Single Environmental Contrast.” Science Advances 5, no. 12 (2019). https://doi.org/10.1126/sciadv.aav9963.
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2019 | Thesis | IST-REx-ID: 6071 | OA
Prizak, Roshan. Coevolution of Transcription Factors and Their Binding Sites in Sequence Space. IST Austria, 2019. https://doi.org/10.15479/at:ista:th6071.
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2018 | Journal Article | IST-REx-ID: 286
Ellis, Thomas, David Field, and Nicholas H Barton. “Efficient Inference of Paternity and Sibship Inference given Known Maternity via Hierarchical Clustering.” Molecular Ecology Resources 18, no. 5 (2018): 988–99. https://doi.org/10.1111/1755-0998.12782.
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2018 | Research Data | IST-REx-ID: 5583 | OA
Ellis, Thomas. Data and Python Scripts Supporting Python Package FAPS. IST Austria, 2018. https://doi.org/10.15479/AT:ISTA:95.
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2018 | Journal Article | IST-REx-ID: 315 | OA
Polechova, Jitka. “Is the Sky the Limit? On the Expansion Threshold of a Species’ Range.” PLoS Biology 16, no. 6 (2018). https://doi.org/10.1371/journal.pbio.2005372.
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2018 | Journal Article | IST-REx-ID: 139 | OA
Fraisse, Christelle, Camille Roux, Pierre Gagnaire, Jonathan Romiguier, Nicolas Faivre, John Welch, and Nicolas Bierne. “The Divergence History of European Blue Mussel Species Reconstructed from Approximate Bayesian Computation: The Effects of Sequencing Techniques and Sampling Strategies.” PeerJ 2018, no. 7 (2018). https://doi.org/10.7717/peerj.5198.
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2018 | Journal Article | IST-REx-ID: 282 | OA
Sachdeva, Himani, and Nicholas H Barton. “Introgression of a Block of Genome under Infinitesimal Selection.” Genetics 209, no. 4 (2018): 1279–1303. https://doi.org/10.1534/genetics.118.301018.
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2018 | Journal Article | IST-REx-ID: 316 | OA
Bod’ová, Katarína, Tadeas Priklopil, David Field, Nicholas H Barton, and Melinda Pickup. “Evolutionary Pathways for the Generation of New Self-Incompatibility Haplotypes in a Non-Self Recognition System.” Genetics 209, no. 3 (2018): 861–83. https://doi.org/10.1534/genetics.118.300748.
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2018 | Journal Article | IST-REx-ID: 33 | OA
Bertl, Johanna, Harald Ringbauer, and Michaël Blum. “Can Secondary Contact Following Range Expansion Be Distinguished from Barriers to Gene Flow?” PeerJ 2018, no. 10 (2018). https://doi.org/10.7717/peerj.5325.
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2018 | Journal Article | IST-REx-ID: 38 | OA
Tavares, Hugo, Annabel Whitley, David Field, Desmond Bradley, Matthew Couchman, Lucy Copsey, Joane Elleouet, et al. “Selection and Gene Flow Shape Genomic Islands That Control Floral Guides.” PNAS 115, no. 43 (2018): 11006–11. https://doi.org/10.1073/pnas.1801832115.
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2018 | Journal Article | IST-REx-ID: 39 | OA
Sachdeva, Himani, and Nicholas H Barton. “Replicability of Introgression under Linked, Polygenic Selection.” Genetics 210, no. 4 (2018): 1411–27. https://doi.org/10.1534/genetics.118.301429.
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2018 | Journal Article | IST-REx-ID: 40 | OA
Barton, Nicholas H. “The Consequences of an Introgression Event.” Molecular Ecology 27, no. 24 (2018): 4973–75. https://doi.org/10.1111/mec.14950.
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2018 | Journal Article | IST-REx-ID: 430 | OA
Novembre, John, and Nicholas H Barton. “Tread Lightly Interpreting Polygenic Tests of Selection.” Genetics 208, no. 4 (2018): 1351–55. https://doi.org/10.1534/genetics.118.300786.
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2018 | Journal Article | IST-REx-ID: 423 | OA
Payne, Pavel, Lukas Geyrhofer, Nicholas H Barton, and Jonathan P Bollback. “CRISPR-Based Herd Immunity Can Limit Phage Epidemics in Bacterial Populations.” ELife 7 (2018). https://doi.org/10.7554/eLife.32035.
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2018 | Journal Article | IST-REx-ID: 563 | OA
Ringbauer, Harald, Alexander Kolesnikov, David Field, and Nicholas H Barton. “Estimating Barriers to Gene Flow from Distorted Isolation-by-Distance Patterns.” Genetics 208, no. 3 (2018): 1231–45. https://doi.org/10.1534/genetics.117.300638.
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2018 | Journal Article | IST-REx-ID: 564 | OA
Barton, Nicholas H, and Alison Etheridge. “Establishment in a New Habitat by Polygenic Adaptation.” Theoretical Population Biology 122, no. 7 (2018): 110–27. https://doi.org/10.1016/j.tpb.2017.11.007.
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2018 | Journal Article | IST-REx-ID: 565 | OA
Charlesworth, Brian, and Nicholas H Barton. “The Spread of an Inversion with Migration and Selection.” Genetics 208, no. 1 (2018): 377–82. https://doi.org/10.1534/genetics.117.300426.
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2018 | Thesis | IST-REx-ID: 200 | OA
Ringbauer, Harald. Inferring Recent Demography from Spatial Genetic Structure. IST Austria, 2018. https://doi.org/10.15479/AT:ISTA:th_963.
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2018 | Journal Article | IST-REx-ID: 607 | OA
Bodova, Katarina, Jan Haskovec, and Peter Markowich. “Well Posedness and Maximum Entropy Approximation for the Dynamics of Quantitative Traits.” Physica D: Nonlinear Phenomena 376–377 (2018): 108–20. https://doi.org/10.1016/j.physd.2017.10.015.
View | DOI | Download Submitted Version (ext.) | arXiv
 
2018 | Research Data | IST-REx-ID: 5757 | OA
Fraisse, Christelle. Supplementary Files for “Pleiotropy Modulates the Efficacy of Selection in Drosophila Melanogaster.” IST Austria, 2018. https://doi.org/10.15479/at:ista:/5757.
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2018 | Journal Article | IST-REx-ID: 723 | OA
Oliveto, Pietro, Tiago Paixao, Jorge Pérez Heredia, Dirk Sudholt, and Barbora Trubenova. “How to Escape Local Optima in Black Box Optimisation When Non Elitism Outperforms Elitism.” Algorithmica 80, no. 5 (2018): 1604–33. https://doi.org/10.1007/s00453-017-0369-2.
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2017 | Thesis | IST-REx-ID: 6291
Payne, Pavel. Bacterial Herd and Social Immunity to Phages. IST Austria, 2017.
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2017 | Journal Article | IST-REx-ID: 1199 | OA
Barton, Nicholas H. “How Does Epistasis Influence the Response to Selection?” Heredity 118 (2017): 96–109. https://doi.org/10.1038/hdy.2016.109.
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2017 | Journal Article | IST-REx-ID: 1336 | OA
Paixao, Tiago, Jorge Pérez Heredia, Dirk Sudholt, and Barbora Trubenova. “Towards a Runtime Comparison of Natural and Artificial Evolution.” Algorithmica 78, no. 2 (2017): 681–713. https://doi.org/10.1007/s00453-016-0212-1.
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2017 | Journal Article | IST-REx-ID: 1351 | OA
Giacobbe, Mirco, Calin C Guet, Ashutosh Gupta, Thomas A Henzinger, Tiago Paixao, and Tatjana Petrov. “Model Checking the Evolution of Gene Regulatory Networks.” Acta Informatica 54, no. 8 (2017): 765–87. https://doi.org/10.1007/s00236-016-0278-x.
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2017 | Journal Article | IST-REx-ID: 1063 | OA
Uecker, Hildegard. “Evolutionary Rescue in Randomly Mating, Selfing, and Clonal Populations.” Evolution 71, no. 4 (2017): 845–58. https://doi.org/10.1111/evo.13191.
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2017 | Journal Article | IST-REx-ID: 1074 | OA
Ringbauer, Harald, Graham Coop, and Nicholas H Barton. “Inferring Recent Demography from Isolation by Distance of Long Shared Sequence Blocks.” Genetics 205, no. 3 (2017): 1335–51. https://doi.org/10.1534/genetics.116.196220.
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2017 | Journal Article | IST-REx-ID: 1077 | OA
Fernandes Redondo, Rodrigo A, Harold Vladar, Tomasz Włodarski, and Jonathan P Bollback. “Evolutionary Interplay between Structure, Energy and Epistasis in the Coat Protein of the FX174 Phage Family.” Journal of the Royal Society Interface 14, no. 126 (2017). https://doi.org/10.1098/rsif.2016.0139.
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2017 | Journal Article | IST-REx-ID: 1111 | OA
Heredia, Jorge, Barbora Trubenova, Dirk Sudholt, and Tiago Paixao. “Selection Limits to Adaptive Walks on Correlated Landscapes.” Genetics 205, no. 2 (2017): 803–25. https://doi.org/10.1534/genetics.116.189340.
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2017 | Conference Paper | IST-REx-ID: 1112
Paixao, Tiago, and Jorge Pérez Heredia. “An Application of Stochastic Differential Equations to Evolutionary Algorithms.” In Proceedings of the 14th ACM/SIGEVO Conference on Foundations of Genetic Algorithms, 3–11. ACM, 2017. https://doi.org/10.1145/3040718.3040729.
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2017 | Journal Article | IST-REx-ID: 1169 | OA
Novak, Sebastian, and Richard Kollár. “Spatial Gene Frequency Waves under Genotype Dependent Dispersal.” Genetics 205, no. 1 (2017): 367–74. https://doi.org/10.1534/genetics.116.193946.
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2017 | Journal Article | IST-REx-ID: 1191 | OA
Kollár, Richard, and Sebastian Novak. “Existence of Traveling Waves for the Generalized F–KPP Equation.” Bulletin of Mathematical Biology 79, no. 3 (2017): 525–59. https://doi.org/10.1007/s11538-016-0244-3.
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2017 | Journal Article | IST-REx-ID: 570 | OA
Lagator, Mato, Srdjan Sarikas, Hande Acar, Jonathan P Bollback, and Calin C Guet. “Regulatory Network Structure Determines Patterns of Intermolecular Epistasis.” ELife 6 (2017). https://doi.org/10.7554/eLife.28921.
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2017 | Journal Article | IST-REx-ID: 611
Bradley, Desmond, Ping Xu, Irina Mohorianu, Annabel Whibley, David Field, Hugo Tavares, Matthew Couchman, et al. “Evolution of Flower Color Pattern through Selection on Regulatory Small RNAs.” Science 358, no. 6365 (2017): 925–28. https://doi.org/10.1126/science.aao3526.
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