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168 Publications

2020 | Journal Article | IST-REx-ID: 7236   OA
C. Baskett, L. Schroeder, M. G. Weber, and D. W. Schemske, “Multiple metrics of latitudinal patterns in insect pollination and herbivory for a tropical‐temperate congener pair,” Ecological Monographs, vol. 90, no. 1, p. e01397, 2020.
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2019 | Journal Article | IST-REx-ID: 5911   OA
R. Faria, K. Johannesson, R. K. Butlin, and A. M. Westram, “Evolving inversions,” Trends in Ecology and Evolution, vol. 34, no. 3, pp. 239–248, 2019.
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2019 | Journal Article | IST-REx-ID: 6022   OA
R. M. Merrill et al., “Genetic dissection of assortative mating behavior,” PLoS Biology, vol. 17, no. 2, 2019.
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2019 | Journal Article | IST-REx-ID: 6680   OA
H. Sachdeva, “Effect of partial selfing and polygenic selection on establishment in a new habitat,” Evolution, vol. 73, no. 9, pp. 1729–1745, 2019.
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2019 | Journal Article | IST-REx-ID: 6856   OA
M. Pickup et al., “Mating system variation in hybrid zones: Facilitation, barriers and asymmetries to gene flow,” New Phytologist, vol. 224, no. 3, pp. 1035–1047, 2019.
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2019 | Journal Article | IST-REx-ID: 6089   OA
C. Fraisse, G. Puixeu Sala, and B. Vicoso, “Pleiotropy modulates the efficacy of selection in drosophila melanogaster,” Molecular biology and evolution, vol. 36, no. 3, pp. 500–515, 2019.
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2019 | Journal Article | IST-REx-ID: 7393   OA
H. E. Morales et al., “Genomic architecture of parallel ecological divergence: Beyond a single environmental contrast,” Science Advances, vol. 5, no. 12, p. eaav9963, 2019.
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2019 | Journal Article | IST-REx-ID: 6857   OA
B. Giese et al., “Gene Drives: Dynamics and regulatory matters – A report from the workshop ‘Evaluation of spatial and temporal control of Gene Drives’, 4 – 5 April 2019, Vienna,” BioEssays, vol. 41, no. 11, p. 1900151, 2019.
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2019 | Journal Article | IST-REx-ID: 6713   OA
J. P. Castro et al., “An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice,” eLife, vol. 8, p. e42014, 2019.
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2019 | Journal Article | IST-REx-ID: 6466   OA
D. Field and C. Fraisse, “Breaking down barriers in morning glories,” Molecular ecology, vol. 28, no. 7, pp. 1579–1581, 2019.
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2019 | Journal Article | IST-REx-ID: 6637   OA
B. Trubenova, M. Krejca, P. K. Lehre, and T. Kötzing, “Surfing on the seascape: Adaptation in a changing environment,” Evolution, vol. 73, no. 7, pp. 1356–1374, 2019.
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2019 | Journal Article | IST-REx-ID: 6795   OA
B. Trubenova and R. Hager, “Green beards in the light of indirect genetic effects,” Ecology and Evolution, vol. 9, no. 17, pp. 9597–9608, 2019.
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2019 | Journal Article | IST-REx-ID: 6858
N. H. Barton, “Is speciation driven by cycles of mixing and isolation?,” National Science Review, vol. 6, no. 2, pp. 291–292, 2019.
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2019 | Journal Article | IST-REx-ID: 7205
K. Johannesson, Z. Zagrodzka, R. Faria, A. M. Westram, and R. K. Butlin, “Is embryo abortion a post-zygotic barrier to gene flow between Littorina ecotypes?,” Journal of Evolutionary Biology, 2019.
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2019 | Journal Article | IST-REx-ID: 5680
C. Andalo, M. Burrus, S. Paute, C. Lauzeral, and D. Field, “Prevalence of legitimate pollinators and nectar robbers and the consequences for fruit set in an Antirrhinum majus hybrid zone,” Botany Letters, vol. 166, no. 1, pp. 80–92, 2019.
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2019 | Journal Article | IST-REx-ID: 6467
C. Fraisse and J. J. Welch, “The distribution of epistasis on simple fitness landscapes,” Biology Letters, vol. 15, no. 4, p. 0881, 2019.
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2019 | Journal Article | IST-REx-ID: 6090   OA
M. Carballo-Pacheco et al., “Receptor crosstalk improves concentration sensing of multiple ligands,” Physical Review E, vol. 99, no. 2, 2019.
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2019 | Journal Article | IST-REx-ID: 6095   OA
R. Faria et al., “Multiple chromosomal rearrangements in a hybrid zone between Littorina saxatilis ecotypes,” Molecular Ecology, vol. 28, no. 6, pp. 1375–1393, 2019.
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2019 | Journal Article | IST-REx-ID: 6230   OA
N. H. Barton, J. Hermisson, and M. Nordborg, “Why structure matters,” eLife, vol. 8, 2019.
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2019 | Journal Article | IST-REx-ID: 6831   OA
G. Puixeu Sala, M. Pickup, D. Field, and S. C. H. Barrett, “Variation in sexual dimorphism in a wind-pollinated plant: The influence of geographical context and life-cycle dynamics,” New Phytologist, vol. 224, no. 3, pp. 1108–1120, 2019.
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2019 | Journal Article | IST-REx-ID: 6855   OA
G. Sella and N. H. Barton, “Thinking about the evolution of complex traits in the era of genome-wide association studies,” Annual Review of Genomics and Human Genetics, vol. 20, pp. 461–493, 2019.
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2019 | Thesis | IST-REx-ID: 6071
R. Prizak, Coevolution of transcription factors and their binding sites in sequence space. IST Austria, 2019.
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2018 | Journal Article | IST-REx-ID: 282   OA
H. Sachdeva and N. H. Barton, “Introgression of a block of genome under infinitesimal selection,” Genetics, vol. 209, no. 4, pp. 1279–1303, 2018.
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2018 | Research Data | IST-REx-ID: 5757
C. Fraisse, Supplementary Files for “Pleiotropy modulates the efficacy of selection in Drosophila melanogaster.” IST Austria, 2018.
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2018 | Journal Article | IST-REx-ID: 315   OA
J. Polechova, “Is the sky the limit? On the expansion threshold of a species’ range,” PLoS Biology, vol. 16, no. 6, 2018.
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2018 | Journal Article | IST-REx-ID: 396
T. Ellis, D. Field, and N. H. Barton, “Inference from paternity and sibships accounting for uncertainty in genealogy,” Molecular Ecology Resources, vol. 18, no. 5, pp. 988–999, 2018.
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2018 | Journal Article | IST-REx-ID: 423   OA
P. Payne, L. Geyrhofer, N. H. Barton, and J. P. Bollback, “CRISPR-based herd immunity can limit phage epidemics in bacterial populations,” eLife, vol. 7, 2018.
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2018 | Journal Article | IST-REx-ID: 430   OA
J. Novembre and N. H. Barton, “Tread lightly interpreting polygenic tests of selection,” Genetics, vol. 208, no. 4, pp. 1351–1355, 2018.
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2018 | Journal Article | IST-REx-ID: 316   OA
K. Bodova, T. Priklopil, D. Field, N. H. Barton, and M. Pickup, “Evolutionary pathways for the generation of new self-incompatibility haplotypes in a non-self recognition system,” Genetics, vol. 209, no. 3, pp. 861–883, 2018.
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2018 | Journal Article | IST-REx-ID: 563   OA
H. Ringbauer, A. Kolesnikov, D. Field, and N. H. Barton, “Estimating barriers to gene flow from distorted isolation-by-distance patterns,” Genetics, vol. 208, no. 3, pp. 1231–1245, 2018.
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2018 | Research Data | IST-REx-ID: 5583   OA
T. Ellis, Data and Python scripts supporting Python package FAPS. IST Austria, 2018.
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2018 | Journal Article | IST-REx-ID: 607   OA
K. Bodova, J. Haskovec, and P. Markowich, “Well posedness and maximum entropy approximation for the dynamics of quantitative traits,” Physica D: Nonlinear Phenomena, vol. 376–377, pp. 108–120, 2018.
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2018 | Journal Article | IST-REx-ID: 139   OA
C. Fraisse et al., “The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: The effects of sequencing techniques and sampling strategies,” PeerJ, vol. 2018, no. 7, 2018.
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2018 | Journal Article | IST-REx-ID: 33   OA
J. Bertl, H. Ringbauer, and M. Blum, “Can secondary contact following range expansion be distinguished from barriers to gene flow?,” PeerJ, vol. 2018, no. 10, 2018.
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2018 | Journal Article | IST-REx-ID: 38   OA
H. Tavares et al., “Selection and gene flow shape genomic islands that control floral guides,” PNAS, vol. 115, no. 43, pp. 11006–11011, 2018.
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2018 | Journal Article | IST-REx-ID: 40   OA
N. H. Barton, “The consequences of an introgression event,” Molecular Ecology, vol. 27, no. 24, pp. 4973–4975, 2018.
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2018 | Journal Article | IST-REx-ID: 564   OA
N. H. Barton and A. Etheridge, “Establishment in a new habitat by polygenic adaptation,” Theoretical Population Biology, vol. 122, no. 7, pp. 110–127, 2018.
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2018 | Journal Article | IST-REx-ID: 723   OA
P. Oliveto, T. Paixao, J. Pérez Heredia, D. Sudholt, and B. Trubenova, “How to escape local optima in black box optimisation when non elitism outperforms elitism,” Algorithmica, vol. 80, no. 5, pp. 1604–1633, 2018.
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2018 | Journal Article | IST-REx-ID: 39   OA
H. Sachdeva and N. H. Barton, “Replicability of introgression under linked, polygenic selection,” Genetics, vol. 210, no. 4, pp. 1411–1427, 2018.
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2018 | Journal Article | IST-REx-ID: 286
T. Ellis, D. Field, and N. H. Barton, “Efficient inference of paternity and sibship inference given known maternity via hierarchical clustering,” Molecular Ecology Resources, vol. 18, no. 5, pp. 988–999, 2018.
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2018 | Thesis | IST-REx-ID: 200
H. Ringbauer, Inferring recent demography from spatial genetic structure. IST Austria, 2018.
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2018 | Journal Article | IST-REx-ID: 565   OA
B. Charlesworth and N. H. Barton, “The spread of an inversion with migration and selection,” Genetics, vol. 208, no. 1, pp. 377–382, 2018.
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2017 | Journal Article | IST-REx-ID: 1111   OA
J. Heredia, B. Trubenova, D. Sudholt, and T. Paixao, “Selection limits to adaptive walks on correlated landscapes,” Genetics, vol. 205, no. 2, pp. 803–825, 2017.
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2017 | Journal Article | IST-REx-ID: 1077   OA
R. A. Fernandes Redondo, H. Vladar, T. Włodarski, and J. P. Bollback, “Evolutionary interplay between structure, energy and epistasis in the coat protein of the fX174 phage family,” Journal of the Royal Society Interface, vol. 14, no. 126, 2017.
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2017 | Journal Article | IST-REx-ID: 910   OA
S. Novak and N. H. Barton, “When does frequency-independent selection maintain genetic variation?,” Genetics, vol. 207, no. 2, pp. 653–668, 2017.
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2017 | Journal Article | IST-REx-ID: 953   OA
D. Charlesworth, N. H. Barton, and B. Charlesworth, “The sources of adaptive evolution,” Proceedings of the Royal Society of London Series B Biological Sciences, vol. 284, no. 1855, 2017.
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2017 | Journal Article | IST-REx-ID: 1351
M. Giacobbe, C. C. Guet, A. Gupta, T. A. Henzinger, T. Paixao, and T. Petrov, “Model checking the evolution of gene regulatory networks,” Acta Informatica, vol. 54, no. 8, pp. 765–787, 2017.
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2017 | Conference Paper | IST-REx-ID: 1112
T. Paixao and J. Pérez Heredia, “An application of stochastic differential equations to evolutionary algorithms,” in Proceedings of the 14th ACM/SIGEVO Conference on Foundations of Genetic Algorithms, Copenhagen, Denmark, 2017, pp. 3–11.
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2017 | Journal Article | IST-REx-ID: 954   OA
M. Lagator, T. Paixao, N. H. Barton, J. P. Bollback, and C. C. Guet, “On the mechanistic nature of epistasis in a canonical cis-regulatory element,” eLife, vol. 6, 2017.
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2017 | Journal Article | IST-REx-ID: 1199   OA
N. H. Barton, “How does epistasis influence the response to selection?,” Heredity, vol. 118, pp. 96–109, 2017.
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2017 | Journal Article | IST-REx-ID: 1074
H. Ringbauer, G. Coop, and N. H. Barton, “Inferring recent demography from isolation by distance of long shared sequence blocks,” Genetics, vol. 205, no. 3, pp. 1335–1351, 2017.
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2017 | Journal Article | IST-REx-ID: 570   OA
M. Lagator, S. Sarikas, H. Acar, J. P. Bollback, and C. C. Guet, “Regulatory network structure determines patterns of intermolecular epistasis,” eLife, vol. 6, 2017.
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2017 | Journal Article | IST-REx-ID: 626   OA
N. H. Barton, A. Etheridge, and A. Véber, “The infinitesimal model: Definition derivation and implications,” Theoretical Population Biology, vol. 118, pp. 50–73, 2017.
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2017 | Journal Article | IST-REx-ID: 955   OA
T. Friedlander, R. Prizak, N. H. Barton, and G. Tkacik, “Evolution of new regulatory functions on biophysically realistic fitness landscapes,” Nature Communications, vol. 8, no. 1, 2017.
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2017 | Journal Article | IST-REx-ID: 614   OA
C. Fraisse, M. A. Picard, and B. Vicoso, “The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W,” Nature Communications, vol. 8, no. 1, p. 1486, 2017.
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2017 | Journal Article | IST-REx-ID: 1063   OA
H. Uecker, “Evolutionary rescue in randomly mating, selfing, and clonal populations,” Evolution, vol. 71, no. 4, pp. 845–858, 2017.
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2017 | Journal Article | IST-REx-ID: 1169   OA
S. Novak and R. Kollár, “Spatial gene frequency waves under genotype dependent dispersal,” Genetics, vol. 205, no. 1, pp. 367–374, 2017.
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2017 | Thesis | IST-REx-ID: 6291
P. Payne, Bacterial herd and social immunity to phages. IST Austria, 2017.
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2017 | Journal Article | IST-REx-ID: 951   OA
T. Schmidt et al., “Local introduction and heterogeneous spatial spread of dengue-suppressing Wolbachia through an urban population of Aedes Aegypti,” PLoS Biology, vol. 15, no. 5, 2017.
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2017 | Journal Article | IST-REx-ID: 696
M. Lukacisinova, S. Novak, and T. Paixao, “Stress induced mutagenesis: Stress diversity facilitates the persistence of mutator genes,” PLoS Computational Biology, vol. 13, no. 7, 2017.
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2017 | Journal Article | IST-REx-ID: 1191   OA
R. Kollár and S. Novak, “Existence of traveling waves for the generalized F–KPP equation,” Bulletin of Mathematical Biology, vol. 79, no. 3, pp. 525–559, 2017.
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2017 | Journal Article | IST-REx-ID: 1336   OA
T. Paixao, J. Pérez Heredia, D. Sudholt, and B. Trubenova, “Towards a runtime comparison of natural and artificial evolution,” Algorithmica, vol. 78, no. 2, pp. 681–713, 2017.
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2017 | Journal Article | IST-REx-ID: 611
D. Bradley et al., “Evolution of flower color pattern through selection on regulatory small RNAs,” Science, vol. 358, no. 6365, pp. 925–928, 2017.
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2017 | Journal Article | IST-REx-ID: 990   OA
H. Sachdeva and N. H. Barton, “Divergence and evolution of assortative mating in a polygenic trait model of speciation with gene flow,” Evolution; International Journal of Organic Evolution, vol. 71, no. 6, pp. 1478–1493, 2017.
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2017 | Journal Article | IST-REx-ID: 952   OA
M. Turelli and N. H. Barton, “Deploying dengue-suppressing Wolbachia: Robust models predict slow but effective spatial spread in Aedes aegypti,” Theoretical Population Biology, vol. 115, pp. 45–60, 2017.
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2017 | Research Data | IST-REx-ID: 7163
C. Fraisse, Supplementary Files for “The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W.” IST Austria, 2017.
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2016 | Journal Article | IST-REx-ID: 1224
Z. Teitel, M. Pickup, D. Field, and S. Barrett, “The dynamics of resource allocation and costs of reproduction in a sexually dimorphic, wind-pollinated dioecious plant,” Plant Biology, vol. 18, no. 1, pp. 98–103, 2016.
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2016 | Journal Article | IST-REx-ID: 1356   OA
N. H. Barton, “Sewall Wright on evolution in Mendelian populations and the ‘Shifting Balance,’” Genetics, vol. 202, no. 1, pp. 3–4, 2016.
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2016 | Conference Paper | IST-REx-ID: 1349   OA
P. Oliveto, T. Paixao, J. Heredia, D. Sudholt, and B. Trubenova, “When non-elitism outperforms elitism for crossing fitness valleys,” in Proceedings of the Genetic and Evolutionary Computation Conference 2016 , Denver, CO, USA, 2016, pp. 1163–1170.
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2016 | Journal Article | IST-REx-ID: 1382
T. Ellis and D. Field, “Repeated gains in yellow and anthocyanin pigmentation in flower colour transitions in the Antirrhineae,” Annals of Botany, vol. 117, no. 7, pp. 1133–1140, 2016.
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2016 | Research Data | IST-REx-ID: 5550   OA
T. Ellis and D. Field, Flower colour data and phylogeny (NEXUS) files. IST Austria, 2016.
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2016 | Journal Article | IST-REx-ID: 1357   OA
N. H. Barton, “Richard Hudson and Norman Kaplan on the coalescent process,” Genetics, vol. 202, no. 3, pp. 865–866, 2016.
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2016 | Journal Article | IST-REx-ID: 1631   OA
J. Kelleher, A. Etheridge, A. Véber, and N. H. Barton, “Spread of pedigree versus genetic ancestry in spatially distributed populations,” Theoretical Population Biology, vol. 108, pp. 1–12, 2016.
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2016 | Research Data | IST-REx-ID: 5551   OA
T. Ellis, Data on pollinator observations and offpsring phenotypes. IST Austria, 2016.
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2016 | Thesis | IST-REx-ID: 1131
M. Tugrul, Evolution of transcriptional regulatory sequences. IST Austria, 2016.
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2016 | Journal Article | IST-REx-ID: 1409   OA
R. Abbott, N. H. Barton, and J. Good, “Genomics of hybridization and its evolutionary consequences,” Molecular Ecology, vol. 25, no. 11, pp. 2325–2332, 2016.
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2016 | Thesis | IST-REx-ID: 1125
S. Novak, Evolutionary proccesses in variable emvironments. IST Austria, 2016.
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2016 | Research Data | IST-REx-ID: 5552   OA
T. Ellis, Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic and frequency data. IST Austria, 2016.
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2016 | Journal Article | IST-REx-ID: 1358
T. Friedlander, R. Prizak, C. C. Guet, N. H. Barton, and G. Tkacik, “Intrinsic limits to gene regulation by global crosstalk,” Nature Communications, vol. 7, 2016.
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2016 | Journal Article | IST-REx-ID: 1195   OA
S. Franssen, N. H. Barton, and C. Schlötterer, “Reconstruction of haplotype-blocks selected during experimental evolution.,” Molecular Biology and Evolution, vol. 34, no. 1, pp. 174–184, 2016.
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2016 | Journal Article | IST-REx-ID: 1241   OA
H. Uecker and J. Hermisson, “The role of recombination in evolutionary rescue,” Genetics, vol. 202, no. 2, pp. 721–732, 2016.
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2016 | Journal Article | IST-REx-ID: 1359   OA
T. Paixao and N. H. Barton, “The effect of gene interactions on the long-term response to selection,” PNAS, vol. 113, no. 16, pp. 4422–4427, 2016.
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2016 | Journal Article | IST-REx-ID: 1518   OA
K. Lohse, M. Chmelik, S. Martin, and N. H. Barton, “Efficient strategies for calculating blockwise likelihoods under the coalescent,” Genetics, vol. 202, no. 2, pp. 775–786, 2016.
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2016 | Research Data | IST-REx-ID: 5553   OA
D. Field and T. Ellis, Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012. IST Austria, 2016.
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2016 | Journal Article | IST-REx-ID: 1158   OA
C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, and N. Bierne, “Shedding light on the grey zone of speciation along a continuum of genomic divergence,” PLoS Biology, vol. 14, no. 12, 2016.
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2016 | Journal Article | IST-REx-ID: 1172   OA
H. Sachdeva, M. Barma, and M. Rao, “Nonequilibrium description of de novo biogenesis and transport through Golgi-like cisternae,” Scientific Reports, vol. 6, 2016.
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2016 | Journal Article | IST-REx-ID: 1420   OA
K. Bod’ová, G. Tkacik, and N. H. Barton, “A general approximation for the dynamics of quantitative traits,” Genetics, vol. 202, no. 4, pp. 1523–1548, 2016.
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2016 | Thesis | IST-REx-ID: 1398
T. Ellis, The role of pollinator-mediated selection in the maintenance of a flower color polymorphism in an Antirrhinum majus hybrid zone. IST Austria, 2016.
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2016 | Research Data | IST-REx-ID: 5554   OA
M. Tugrul, Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase. IST Austria, 2016.
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2015 | Journal Article | IST-REx-ID: 1666   OA
M. Tugrul, T. Paixao, N. H. Barton, and G. Tkacik, “Dynamics of transcription factor binding site evolution,” PLoS Genetics, vol. 11, no. 11, 2015.
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2015 | Journal Article | IST-REx-ID: 1818   OA
J. Polechova and N. H. Barton, “Limits to adaptation along environmental gradients,” PNAS, vol. 112, no. 20, pp. 6401–6406, 2015.
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2015 | Journal Article | IST-REx-ID: 1851
T. Priklopil, E. Kisdi, and M. Gyllenberg, “Evolutionarily stable mating decisions for sequentially searching females and the stability of reproductive isolation by assortative mating,” Evolution, vol. 69, no. 4, pp. 1015–1026, 2015.
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2015 | Journal Article | IST-REx-ID: 1542   OA
T. Paixao et al., “Toward a unifying framework for evolutionary processes,” Journal of Theoretical Biology, vol. 383, pp. 28–43, 2015.
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2015 | Journal Article | IST-REx-ID: 1883
S. Keller-Schmidt, M. Tugrul, V. Eguíluz, E. Hernandez Garcia, and K. Klemm, “Anomalous scaling in an age-dependent branching model,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 91, no. 2, 2015.
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2015 | Journal Article | IST-REx-ID: 1681   OA
T. Priklopil and K. Chatterjee, “Evolution of decisions in population games with sequentially searching individuals,” Games, vol. 6, no. 4, pp. 413–437, 2015.
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2015 | Conference Paper | IST-REx-ID: 1430   OA
T. Paixao, D. Sudholt, J. Heredia, and B. Trubenova, “First steps towards a runtime comparison of natural and artificial evolution,” in Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation, Madrid, Spain, 2015, pp. 1455–1462.
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2015 | Journal Article | IST-REx-ID: 1699   OA
H. Uecker, D. Setter, and J. Hermisson, “Adaptive gene introgression after secondary contact,” Journal of Mathematical Biology, vol. 70, no. 7, pp. 1523–1580, 2015.
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2015 | Journal Article | IST-REx-ID: 1703
L. Broadhurst, G. Fifield, B. Vanzella, and M. Pickup, “An evaluation of the genetic structure of seed sources and the maintenance of genetic diversity during establishment of two yellow box (Eucalyptus melliodora) seed-production areas,” Australian Journal of Botany, vol. 63, no. 5, pp. 455–466, 2015.
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2015 | Journal Article | IST-REx-ID: 1809   OA
B. Trubenova, S. Novak, and R. Hager, “Indirect genetic effects and the dynamics of social interactions,” PLoS One, vol. 10, no. 5, 2015.
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2015 | Conference Paper | IST-REx-ID: 1835   OA
M. Giacobbe, C. C. Guet, A. Gupta, T. A. Henzinger, T. Paixao, and T. Petrov, “Model checking gene regulatory networks,” vol. 9035. Springer, pp. 469–483, 2015.
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