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177 Publications

2020 | Journal Article | IST-REx-ID: 8169 | OA
H. Shang et al., “Evolution of strong reproductive isolation in plants: Broad-scale patterns and lessons from a perennial model group,” Philosophical Transactions of the Royal Society. Series B: Biological Sciences, vol. 375, no. 1806, 2020.
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2020 | Research Data | IST-REx-ID: 8254 | OA
L. S. Arathoon, Estimating inbreeding and its effects in a long-term study of snapdragons (Antirrhinum majus). IST Austria, 2020.
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2020 | Journal Article | IST-REx-ID: 7205 | OA
K. Johannesson, Z. Zagrodzka, R. Faria, A. M. Westram, and R. K. Butlin, “Is embryo abortion a post-zygotic barrier to gene flow between Littorina ecotypes?,” Journal of Evolutionary Biology, vol. 33, no. 3, pp. 342–351, 2020.
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2020 | Thesis | IST-REx-ID: 8574 | OA
E. Szep, Local adaptation in metapopulations. IST Austria, 2020.
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2020 | Journal Article | IST-REx-ID: 8708 | OA
A. Simon et al., “How do species barriers decay? Concordance and local introgression in mosaic hybrid zones of mussels,” Journal of Evolutionary Biology, 2020.
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2020 | Journal Article | IST-REx-ID: 8743
A. Salces-Castellano et al., “Long-term cloud forest response to climate warming revealed by insect speciation history,” Evolution, 2020.
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2020 | Journal Article | IST-REx-ID: 7995 | OA
S. Perini, M. Rafajlović, A. M. Westram, K. Johannesson, and R. K. Butlin, “Assortative mating, sexual selection, and their consequences for gene flow in Littorina,” Evolution, vol. 74, no. 7, pp. 1482–1497, 2020.
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2020 | Research Data Reference | IST-REx-ID: 8809 | OA
S. Perini, M. Rafajlovic, A. M. Westram, K. Johannesson, and R. Butlin, Data from: Assortative mating, sexual selection and their consequences for gene flow in Littorina. Dryad, 2020.
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2019 | Journal Article | IST-REx-ID: 7393 | OA
H. E. Morales et al., “Genomic architecture of parallel ecological divergence: Beyond a single environmental contrast,” Science Advances, vol. 5, no. 12, 2019.
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2019 | Journal Article | IST-REx-ID: 5680
C. Andalo, M. Burrus, S. Paute, C. Lauzeral, and D. Field, “Prevalence of legitimate pollinators and nectar robbers and the consequences for fruit set in an Antirrhinum majus hybrid zone,” Botany Letters, vol. 166, no. 1, pp. 80–92, 2019.
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2019 | Journal Article | IST-REx-ID: 5911 | OA
R. Faria, K. Johannesson, R. K. Butlin, and A. M. Westram, “Evolving inversions,” Trends in Ecology and Evolution, vol. 34, no. 3, pp. 239–248, 2019.
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2019 | Journal Article | IST-REx-ID: 6022 | OA
R. M. Merrill et al., “Genetic dissection of assortative mating behavior,” PLoS Biology, vol. 17, no. 2, 2019.
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2019 | Thesis | IST-REx-ID: 6071 | OA
R. Prizak, Coevolution of transcription factors and their binding sites in sequence space. IST Austria, 2019.
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2019 | Journal Article | IST-REx-ID: 6089 | OA
C. Fraisse, G. Puixeu Sala, and B. Vicoso, “Pleiotropy modulates the efficacy of selection in drosophila melanogaster,” Molecular biology and evolution, vol. 36, no. 3, pp. 500–515, 2019.
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2019 | Journal Article | IST-REx-ID: 6090 | OA
M. Carballo-Pacheco et al., “Receptor crosstalk improves concentration sensing of multiple ligands,” Physical Review E, vol. 99, no. 2, 2019.
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2019 | Journal Article | IST-REx-ID: 6095 | OA
R. Faria et al., “Multiple chromosomal rearrangements in a hybrid zone between Littorina saxatilis ecotypes,” Molecular Ecology, vol. 28, no. 6, pp. 1375–1393, 2019.
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2019 | Journal Article | IST-REx-ID: 6230 | OA
N. H. Barton, J. Hermisson, and M. Nordborg, “Why structure matters,” eLife, vol. 8, 2019.
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2019 | Journal Article | IST-REx-ID: 6466 | OA
D. Field and C. Fraisse, “Breaking down barriers in morning glories,” Molecular ecology, vol. 28, no. 7, pp. 1579–1581, 2019.
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2019 | Journal Article | IST-REx-ID: 6637 | OA
B. Trubenova, M. Krejca, P. K. Lehre, and T. Kötzing, “Surfing on the seascape: Adaptation in a changing environment,” Evolution, vol. 73, no. 7, pp. 1356–1374, 2019.
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2019 | Journal Article | IST-REx-ID: 6680 | OA
H. Sachdeva, “Effect of partial selfing and polygenic selection on establishment in a new habitat,” Evolution, vol. 73, no. 9, pp. 1729–1745, 2019.
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2019 | Journal Article | IST-REx-ID: 6713 | OA
J. P. Castro et al., “An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice,” eLife, vol. 8, 2019.
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2019 | Journal Article | IST-REx-ID: 6795 | OA
B. Trubenova and R. Hager, “Green beards in the light of indirect genetic effects,” Ecology and Evolution, vol. 9, no. 17, pp. 9597–9608, 2019.
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2019 | Journal Article | IST-REx-ID: 6831 | OA
G. Puixeu Sala, M. Pickup, D. Field, and S. C. H. Barrett, “Variation in sexual dimorphism in a wind-pollinated plant: The influence of geographical context and life-cycle dynamics,” New Phytologist, vol. 224, no. 3, pp. 1108–1120, 2019.
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2019 | Journal Article | IST-REx-ID: 6855 | OA
G. Sella and N. H. Barton, “Thinking about the evolution of complex traits in the era of genome-wide association studies,” Annual Review of Genomics and Human Genetics, vol. 20, pp. 461–493, 2019.
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2019 | Journal Article | IST-REx-ID: 6856 | OA
M. Pickup et al., “Mating system variation in hybrid zones: Facilitation, barriers and asymmetries to gene flow,” New Phytologist, vol. 224, no. 3, pp. 1035–1047, 2019.
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2019 | Journal Article | IST-REx-ID: 6857 | OA
B. Giese et al., “Gene Drives: Dynamics and regulatory matters – A report from the workshop ‘Evaluation of spatial and temporal control of Gene Drives’, 4 – 5 April 2019, Vienna,” BioEssays, vol. 41, no. 11, 2019.
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2019 | Journal Article | IST-REx-ID: 6467 | OA
C. Fraisse and J. J. Welch, “The distribution of epistasis on simple fitness landscapes,” Biology Letters, vol. 15, no. 4, 2019.
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2019 | Journal Article | IST-REx-ID: 6858 | OA
N. H. Barton, “Is speciation driven by cycles of mixing and isolation?,” National Science Review, vol. 6, no. 2, pp. 291–292, 2019.
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2018 | Thesis | IST-REx-ID: 200 | OA
H. Ringbauer, Inferring recent demography from spatial genetic structure. IST Austria, 2018.
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2018 | Journal Article | IST-REx-ID: 723 | OA
P. Oliveto, T. Paixao, J. Pérez Heredia, D. Sudholt, and B. Trubenova, “How to escape local optima in black box optimisation when non elitism outperforms elitism,” Algorithmica, vol. 80, no. 5, pp. 1604–1633, 2018.
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2018 | Journal Article | IST-REx-ID: 40 | OA
N. H. Barton, “The consequences of an introgression event,” Molecular Ecology, vol. 27, no. 24, pp. 4973–4975, 2018.
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2018 | Journal Article | IST-REx-ID: 423 | OA
P. Payne, L. Geyrhofer, N. H. Barton, and J. P. Bollback, “CRISPR-based herd immunity can limit phage epidemics in bacterial populations,” eLife, vol. 7, 2018.
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2018 | Journal Article | IST-REx-ID: 430 | OA
J. Novembre and N. H. Barton, “Tread lightly interpreting polygenic tests of selection,” Genetics, vol. 208, no. 4, pp. 1351–1355, 2018.
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2018 | Research Data | IST-REx-ID: 5583 | OA
T. Ellis, Data and Python scripts supporting Python package FAPS. IST Austria, 2018.
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2018 | Journal Article | IST-REx-ID: 563 | OA
H. Ringbauer, A. Kolesnikov, D. Field, and N. H. Barton, “Estimating barriers to gene flow from distorted isolation-by-distance patterns,” Genetics, vol. 208, no. 3, pp. 1231–1245, 2018.
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2018 | Journal Article | IST-REx-ID: 564 | OA
N. H. Barton and A. Etheridge, “Establishment in a new habitat by polygenic adaptation,” Theoretical Population Biology, vol. 122, no. 7, pp. 110–127, 2018.
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2018 | Journal Article | IST-REx-ID: 565 | OA
B. Charlesworth and N. H. Barton, “The spread of an inversion with migration and selection,” Genetics, vol. 208, no. 1, pp. 377–382, 2018.
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2018 | Research Data | IST-REx-ID: 5757 | OA
C. Fraisse, Supplementary Files for “Pleiotropy modulates the efficacy of selection in Drosophila melanogaster.” IST Austria, 2018.
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2018 | Journal Article | IST-REx-ID: 607 | OA
K. Bodova, J. Haskovec, and P. Markowich, “Well posedness and maximum entropy approximation for the dynamics of quantitative traits,” Physica D: Nonlinear Phenomena, vol. 376–377, pp. 108–120, 2018.
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2018 | Journal Article | IST-REx-ID: 282 | OA
H. Sachdeva and N. H. Barton, “Introgression of a block of genome under infinitesimal selection,” Genetics, vol. 209, no. 4, pp. 1279–1303, 2018.
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2018 | Journal Article | IST-REx-ID: 286
T. Ellis, D. Field, and N. H. Barton, “Efficient inference of paternity and sibship inference given known maternity via hierarchical clustering,” Molecular Ecology Resources, vol. 18, no. 5, pp. 988–999, 2018.
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2018 | Journal Article | IST-REx-ID: 315 | OA
J. Polechova, “Is the sky the limit? On the expansion threshold of a species’ range,” PLoS Biology, vol. 16, no. 6, 2018.
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2018 | Journal Article | IST-REx-ID: 139 | OA
C. Fraisse et al., “The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: The effects of sequencing techniques and sampling strategies,” PeerJ, vol. 2018, no. 7, 2018.
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2018 | Journal Article | IST-REx-ID: 316 | OA
K. Bod’ová, T. Priklopil, D. Field, N. H. Barton, and M. Pickup, “Evolutionary pathways for the generation of new self-incompatibility haplotypes in a non-self recognition system,” Genetics, vol. 209, no. 3, pp. 861–883, 2018.
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2018 | Journal Article | IST-REx-ID: 33 | OA
J. Bertl, H. Ringbauer, and M. Blum, “Can secondary contact following range expansion be distinguished from barriers to gene flow?,” PeerJ, vol. 2018, no. 10, 2018.
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2018 | Journal Article | IST-REx-ID: 38 | OA
H. Tavares et al., “Selection and gene flow shape genomic islands that control floral guides,” PNAS, vol. 115, no. 43, pp. 11006–11011, 2018.
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2018 | Journal Article | IST-REx-ID: 39 | OA
H. Sachdeva and N. H. Barton, “Replicability of introgression under linked, polygenic selection,” Genetics, vol. 210, no. 4, pp. 1411–1427, 2018.
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2017 | Research Data | IST-REx-ID: 7163 | OA
C. Fraisse, Supplementary Files for “The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W.” IST Austria, 2017.
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2017 | Journal Article | IST-REx-ID: 570 | OA
M. Lagator, S. Sarikas, H. Acar, J. P. Bollback, and C. C. Guet, “Regulatory network structure determines patterns of intermolecular epistasis,” eLife, vol. 6, 2017.
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2017 | Journal Article | IST-REx-ID: 611
D. Bradley et al., “Evolution of flower color pattern through selection on regulatory small RNAs,” Science, vol. 358, no. 6365, pp. 925–928, 2017.
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2017 | Journal Article | IST-REx-ID: 614 | OA
C. Fraisse, M. A. L. Picard, and B. Vicoso, “The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W,” Nature Communications, vol. 8, no. 1, 2017.
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2017 | Journal Article | IST-REx-ID: 626 | OA
N. H. Barton, A. Etheridge, and A. Véber, “The infinitesimal model: Definition derivation and implications,” Theoretical Population Biology, vol. 118, pp. 50–73, 2017.
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2017 | Thesis | IST-REx-ID: 6291
P. Payne, Bacterial herd and social immunity to phages. IST Austria, 2017.
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2017 | Journal Article | IST-REx-ID: 696 | OA
M. Lukacisinova, S. Novak, and T. Paixao, “Stress induced mutagenesis: Stress diversity facilitates the persistence of mutator genes,” PLoS Computational Biology, vol. 13, no. 7, 2017.
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2017 | Journal Article | IST-REx-ID: 910 | OA
S. Novak and N. H. Barton, “When does frequency-independent selection maintain genetic variation?,” Genetics, vol. 207, no. 2, pp. 653–668, 2017.
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2017 | Journal Article | IST-REx-ID: 951 | OA
T. Schmidt et al., “Local introduction and heterogeneous spatial spread of dengue-suppressing Wolbachia through an urban population of Aedes Aegypti,” PLoS Biology, vol. 15, no. 5, 2017.
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2017 | Journal Article | IST-REx-ID: 952 | OA
M. Turelli and N. H. Barton, “Deploying dengue-suppressing Wolbachia: Robust models predict slow but effective spatial spread in Aedes aegypti,” Theoretical Population Biology, vol. 115, pp. 45–60, 2017.
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2017 | Journal Article | IST-REx-ID: 953 | OA
D. Charlesworth, N. H. Barton, and B. Charlesworth, “The sources of adaptive evolution,” Proceedings of the Royal Society of London Series B Biological Sciences, vol. 284, no. 1855, 2017.
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2017 | Journal Article | IST-REx-ID: 954 | OA
M. Lagator, T. Paixao, N. H. Barton, J. P. Bollback, and C. C. Guet, “On the mechanistic nature of epistasis in a canonical cis-regulatory element,” eLife, vol. 6, 2017.
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2017 | Journal Article | IST-REx-ID: 955 | OA
T. Friedlander, R. Prizak, N. H. Barton, and G. Tkačik, “Evolution of new regulatory functions on biophysically realistic fitness landscapes,” Nature Communications, vol. 8, no. 1, 2017.
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2017 | Journal Article | IST-REx-ID: 990 | OA
H. Sachdeva and N. H. Barton, “Divergence and evolution of assortative mating in a polygenic trait model of speciation with gene flow,” Evolution; International Journal of Organic Evolution, vol. 71, no. 6, pp. 1478–1493, 2017.
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2017 | Journal Article | IST-REx-ID: 1191 | OA
R. Kollár and S. Novak, “Existence of traveling waves for the generalized F–KPP equation,” Bulletin of Mathematical Biology, vol. 79, no. 3, pp. 525–559, 2017.
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2017 | Journal Article | IST-REx-ID: 1199 | OA
N. H. Barton, “How does epistasis influence the response to selection?,” Heredity, vol. 118, pp. 96–109, 2017.
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2017 | Journal Article | IST-REx-ID: 1336 | OA
T. Paixao, J. Pérez Heredia, D. Sudholt, and B. Trubenova, “Towards a runtime comparison of natural and artificial evolution,” Algorithmica, vol. 78, no. 2, pp. 681–713, 2017.
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2017 | Journal Article | IST-REx-ID: 1351 | OA
M. Giacobbe, C. C. Guet, A. Gupta, T. A. Henzinger, T. Paixao, and T. Petrov, “Model checking the evolution of gene regulatory networks,” Acta Informatica, vol. 54, no. 8, pp. 765–787, 2017.
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2017 | Journal Article | IST-REx-ID: 1063 | OA
H. Uecker, “Evolutionary rescue in randomly mating, selfing, and clonal populations,” Evolution, vol. 71, no. 4, pp. 845–858, 2017.
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2017 | Journal Article | IST-REx-ID: 1074 | OA
H. Ringbauer, G. Coop, and N. H. Barton, “Inferring recent demography from isolation by distance of long shared sequence blocks,” Genetics, vol. 205, no. 3, pp. 1335–1351, 2017.
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2017 | Journal Article | IST-REx-ID: 1077 | OA
R. A. Fernandes Redondo, H. Vladar, T. Włodarski, and J. P. Bollback, “Evolutionary interplay between structure, energy and epistasis in the coat protein of the fX174 phage family,” Journal of the Royal Society Interface, vol. 14, no. 126, 2017.
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2017 | Journal Article | IST-REx-ID: 1111 | OA
J. Heredia, B. Trubenova, D. Sudholt, and T. Paixao, “Selection limits to adaptive walks on correlated landscapes,” Genetics, vol. 205, no. 2, pp. 803–825, 2017.
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2017 | Conference Paper | IST-REx-ID: 1112
T. Paixao and J. Pérez Heredia, “An application of stochastic differential equations to evolutionary algorithms,” in Proceedings of the 14th ACM/SIGEVO Conference on Foundations of Genetic Algorithms, Copenhagen, Denmark, 2017, pp. 3–11.
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2017 | Journal Article | IST-REx-ID: 1169 | OA
S. Novak and R. Kollár, “Spatial gene frequency waves under genotype dependent dispersal,” Genetics, vol. 205, no. 1, pp. 367–374, 2017.
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2016 | Research Data | IST-REx-ID: 5550 | OA
T. Ellis and D. Field, Flower colour data and phylogeny (NEXUS) files. IST Austria, 2016.
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2016 | Research Data | IST-REx-ID: 5551 | OA
T. Ellis, Data on pollinator observations and offpsring phenotypes. IST Austria, 2016.
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2016 | Research Data | IST-REx-ID: 5552 | OA
T. Ellis, Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic and frequency data. IST Austria, 2016.
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2016 | Research Data | IST-REx-ID: 5553 | OA
D. Field and T. Ellis, Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012. IST Austria, 2016.
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2016 | Research Data | IST-REx-ID: 5554 | OA
M. Tugrul, Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase. IST Austria, 2016.
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2016 | Journal Article | IST-REx-ID: 1631 | OA
J. Kelleher, A. Etheridge, A. Véber, and N. H. Barton, “Spread of pedigree versus genetic ancestry in spatially distributed populations,” Theoretical Population Biology, vol. 108, pp. 1–12, 2016.
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2016 | Journal Article | IST-REx-ID: 1195 | OA
S. Franssen, N. H. Barton, and C. Schlötterer, “Reconstruction of haplotype-blocks selected during experimental evolution.,” Molecular Biology and Evolution, vol. 34, no. 1, pp. 174–184, 2016.
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2016 | Journal Article | IST-REx-ID: 1224
Z. Teitel, M. Pickup, D. Field, and S. Barrett, “The dynamics of resource allocation and costs of reproduction in a sexually dimorphic, wind-pollinated dioecious plant,” Plant Biology, vol. 18, no. 1, pp. 98–103, 2016.
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2016 | Journal Article | IST-REx-ID: 1241 | OA
H. Uecker and J. Hermisson, “The role of recombination in evolutionary rescue,” Genetics, vol. 202, no. 2, pp. 721–732, 2016.
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2016 | Conference Paper | IST-REx-ID: 1349 | OA
P. Oliveto, T. Paixao, J. Heredia, D. Sudholt, and B. Trubenova, “When non-elitism outperforms elitism for crossing fitness valleys,” in Proceedings of the Genetic and Evolutionary Computation Conference 2016 , Denver, CO, USA, 2016, pp. 1163–1170.
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2016 | Journal Article | IST-REx-ID: 1356 | OA
N. H. Barton, “Sewall Wright on evolution in Mendelian populations and the ‘Shifting Balance,’” Genetics, vol. 202, no. 1, pp. 3–4, 2016.
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2016 | Journal Article | IST-REx-ID: 1357 | OA
N. H. Barton, “Richard Hudson and Norman Kaplan on the coalescent process,” Genetics, vol. 202, no. 3, pp. 865–866, 2016.
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2016 | Journal Article | IST-REx-ID: 1358 | OA
T. Friedlander, R. Prizak, C. C. Guet, N. H. Barton, and G. Tkačik, “Intrinsic limits to gene regulation by global crosstalk,” Nature Communications, vol. 7, 2016.
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2016 | Journal Article | IST-REx-ID: 1359 | OA
T. Paixao and N. H. Barton, “The effect of gene interactions on the long-term response to selection,” PNAS, vol. 113, no. 16, pp. 4422–4427, 2016.
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2016 | Journal Article | IST-REx-ID: 1382
T. Ellis and D. Field, “Repeated gains in yellow and anthocyanin pigmentation in flower colour transitions in the Antirrhineae,” Annals of Botany, vol. 117, no. 7, pp. 1133–1140, 2016.
View | Files available | DOI
 
2016 | Thesis | IST-REx-ID: 1398 | OA
T. Ellis, The role of pollinator-mediated selection in the maintenance of a flower color polymorphism in an Antirrhinum majus hybrid zone. IST Austria, 2016.
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2016 | Journal Article | IST-REx-ID: 1409 | OA
R. Abbott, N. H. Barton, and J. Good, “Genomics of hybridization and its evolutionary consequences,” Molecular Ecology, vol. 25, no. 11, pp. 2325–2332, 2016.
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2016 | Journal Article | IST-REx-ID: 1420 | OA
K. Bod’ová, G. Tkacik, and N. H. Barton, “A general approximation for the dynamics of quantitative traits,” Genetics, vol. 202, no. 4, pp. 1523–1548, 2016.
View | DOI | Download Preprint (ext.) | arXiv
 
2016 | Journal Article | IST-REx-ID: 1518 | OA
K. Lohse, M. Chmelik, S. Martin, and N. H. Barton, “Efficient strategies for calculating blockwise likelihoods under the coalescent,” Genetics, vol. 202, no. 2, pp. 775–786, 2016.
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2016 | Thesis | IST-REx-ID: 1125
S. Novak, Evolutionary proccesses in variable emvironments. IST Austria, 2016.
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2016 | Thesis | IST-REx-ID: 1131
M. Tugrul, Evolution of transcriptional regulatory sequences. IST Austria, 2016.
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2016 | Journal Article | IST-REx-ID: 1158 | OA
C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, and N. Bierne, “Shedding light on the grey zone of speciation along a continuum of genomic divergence,” PLoS Biology, vol. 14, no. 12, 2016.
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2016 | Journal Article | IST-REx-ID: 1172 | OA
H. Sachdeva, M. Barma, and M. Rao, “Nonequilibrium description of de novo biogenesis and transport through Golgi-like cisternae,” Scientific Reports, vol. 6, 2016.
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2015 | Journal Article | IST-REx-ID: 1542 | OA
T. Paixao et al., “Toward a unifying framework for evolutionary processes,” Journal of Theoretical Biology, vol. 383, pp. 28–43, 2015.
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2015 | Journal Article | IST-REx-ID: 1666 | OA
M. Tugrul, T. Paixao, N. H. Barton, and G. Tkačik, “Dynamics of transcription factor binding site evolution,” PLoS Genetics, vol. 11, no. 11, 2015.
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2015 | Journal Article | IST-REx-ID: 1681 | OA
T. Priklopil and K. Chatterjee, “Evolution of decisions in population games with sequentially searching individuals,” Games, vol. 6, no. 4, pp. 413–437, 2015.
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2015 | Journal Article | IST-REx-ID: 1699 | OA
H. Uecker, D. Setter, and J. Hermisson, “Adaptive gene introgression after secondary contact,” Journal of Mathematical Biology, vol. 70, no. 7, pp. 1523–1580, 2015.
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2015 | Journal Article | IST-REx-ID: 1703
L. Broadhurst, G. Fifield, B. Vanzella, and M. Pickup, “An evaluation of the genetic structure of seed sources and the maintenance of genetic diversity during establishment of two yellow box (Eucalyptus melliodora) seed-production areas,” Australian Journal of Botany, vol. 63, no. 5, pp. 455–466, 2015.
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2015 | Journal Article | IST-REx-ID: 1809 | OA
B. Trubenova, S. Novak, and R. Hager, “Indirect genetic effects and the dynamics of social interactions,” PLoS One, vol. 10, no. 5, 2015.
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