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165 Publications

2017 | Journal Article | IST-REx-ID: 1199 | OA
Barton, Nicholas H. “How Does Epistasis Influence the Response to Selection?” Heredity 118 (2017): 96–109. https://doi.org/10.1038/hdy.2016.109.
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2017 | Journal Article | IST-REx-ID: 1336 | OA
Paixao, Tiago, Jorge Pérez Heredia, Dirk Sudholt, and Barbora Trubenova. “Towards a Runtime Comparison of Natural and Artificial Evolution.” Algorithmica 78, no. 2 (2017): 681–713. https://doi.org/10.1007/s00453-016-0212-1.
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2017 | Journal Article | IST-REx-ID: 1351 | OA
Giacobbe, Mirco, Calin C Guet, Ashutosh Gupta, Thomas A Henzinger, Tiago Paixao, and Tatjana Petrov. “Model Checking the Evolution of Gene Regulatory Networks.” Acta Informatica 54, no. 8 (2017): 765–87. https://doi.org/10.1007/s00236-016-0278-x.
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2017 | Journal Article | IST-REx-ID: 1063 | OA
Uecker, Hildegard. “Evolutionary Rescue in Randomly Mating, Selfing, and Clonal Populations.” Evolution 71, no. 4 (2017): 845–58. https://doi.org/10.1111/evo.13191.
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2017 | Journal Article | IST-REx-ID: 1074 | OA
Ringbauer, Harald, Graham Coop, and Nicholas H Barton. “Inferring Recent Demography from Isolation by Distance of Long Shared Sequence Blocks.” Genetics 205, no. 3 (2017): 1335–51. https://doi.org/10.1534/genetics.116.196220.
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2017 | Journal Article | IST-REx-ID: 1077 | OA
Fernandes Redondo, Rodrigo A, Harold Vladar, Tomasz Włodarski, and Jonathan P Bollback. “Evolutionary Interplay between Structure, Energy and Epistasis in the Coat Protein of the FX174 Phage Family.” Journal of the Royal Society Interface 14, no. 126 (2017). https://doi.org/10.1098/rsif.2016.0139.
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2017 | Journal Article | IST-REx-ID: 1111 | OA
Heredia, Jorge, Barbora Trubenova, Dirk Sudholt, and Tiago Paixao. “Selection Limits to Adaptive Walks on Correlated Landscapes.” Genetics 205, no. 2 (2017): 803–25. https://doi.org/10.1534/genetics.116.189340.
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2017 | Conference Paper | IST-REx-ID: 1112
Paixao, Tiago, and Jorge Pérez Heredia. “An Application of Stochastic Differential Equations to Evolutionary Algorithms.” In Proceedings of the 14th ACM/SIGEVO Conference on Foundations of Genetic Algorithms, 3–11. ACM, 2017. https://doi.org/10.1145/3040718.3040729.
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2017 | Journal Article | IST-REx-ID: 1169 | OA
Novak, Sebastian, and Richard Kollár. “Spatial Gene Frequency Waves under Genotype Dependent Dispersal.” Genetics 205, no. 1 (2017): 367–74. https://doi.org/10.1534/genetics.116.193946.
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2016 | Journal Article | IST-REx-ID: 1631 | OA
Kelleher, Jerome, Alison Etheridge, Amandine Véber, and Nicholas H Barton. “Spread of Pedigree versus Genetic Ancestry in Spatially Distributed Populations.” Theoretical Population Biology 108 (2016): 1–12. https://doi.org/10.1016/j.tpb.2015.10.008.
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2016 | Journal Article | IST-REx-ID: 1195 | OA
Franssen, Susan, Nicholas H Barton, and Christian Schlötterer. “Reconstruction of Haplotype-Blocks Selected during Experimental Evolution.” Molecular Biology and Evolution 34, no. 1 (2016): 174–84. https://doi.org/10.1093/molbev/msw210.
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2016 | Journal Article | IST-REx-ID: 1224
Teitel, Zachary, Melinda Pickup, David Field, and Spencer Barrett. “The Dynamics of Resource Allocation and Costs of Reproduction in a Sexually Dimorphic, Wind-Pollinated Dioecious Plant.” Plant Biology 18, no. 1 (2016): 98–103. https://doi.org/10.1111/plb.12336.
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2016 | Journal Article | IST-REx-ID: 1241 | OA
Uecker, Hildegard, and Joachim Hermisson. “The Role of Recombination in Evolutionary Rescue.” Genetics 202, no. 2 (2016): 721–32. https://doi.org/10.1534/genetics.115.180299.
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2016 | Conference Paper | IST-REx-ID: 1349 | OA
Oliveto, Pietro, Tiago Paixao, Jorge Heredia, Dirk Sudholt, and Barbora Trubenova. “When Non-Elitism Outperforms Elitism for Crossing Fitness Valleys.” In Proceedings of the Genetic and Evolutionary Computation Conference 2016 , 1163–70. ACM, 2016. https://doi.org/10.1145/2908812.2908909.
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2016 | Journal Article | IST-REx-ID: 1356 | OA
Barton, Nicholas H. “Sewall Wright on Evolution in Mendelian Populations and the ‘Shifting Balance.’” Genetics 202, no. 1 (2016): 3–4. https://doi.org/10.1534/genetics.115.184796.
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2016 | Journal Article | IST-REx-ID: 1357 | OA
Barton, Nicholas H. “Richard Hudson and Norman Kaplan on the Coalescent Process.” Genetics 202, no. 3 (2016): 865–66. https://doi.org/10.1534/genetics.116.187542.
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2016 | Journal Article | IST-REx-ID: 1358 | OA
Friedlander, Tamar, Roshan Prizak, Calin C Guet, Nicholas H Barton, and Gašper Tkačik. “Intrinsic Limits to Gene Regulation by Global Crosstalk.” Nature Communications 7 (2016). https://doi.org/10.1038/ncomms12307.
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2016 | Journal Article | IST-REx-ID: 1359 | OA
Paixao, Tiago, and Nicholas H Barton. “The Effect of Gene Interactions on the Long-Term Response to Selection.” PNAS 113, no. 16 (2016): 4422–27. https://doi.org/10.1073/pnas.1518830113.
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2016 | Journal Article | IST-REx-ID: 1382
Ellis, Thomas, and David Field. “Repeated Gains in Yellow and Anthocyanin Pigmentation in Flower Colour Transitions in the Antirrhineae.” Annals of Botany 117, no. 7 (2016): 1133–40. https://doi.org/10.1093/aob/mcw043.
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2016 | Thesis | IST-REx-ID: 1398 | OA
Ellis, Thomas. The Role of Pollinator-Mediated Selection in the Maintenance of a Flower Color Polymorphism in an Antirrhinum Majus Hybrid Zone. IST Austria, 2016. https://doi.org/10.15479/AT:ISTA:TH_526 .
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2016 | Journal Article | IST-REx-ID: 1409 | OA
Abbott, Richard, Nicholas H Barton, and Jeffrey Good. “Genomics of Hybridization and Its Evolutionary Consequences.” Molecular Ecology 25, no. 11 (2016): 2325–32. https://doi.org/10.1111/mec.13685.
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2016 | Journal Article | IST-REx-ID: 1420 | OA
Bod’ová, Katarína, Gasper Tkacik, and Nicholas H Barton. “A General Approximation for the Dynamics of Quantitative Traits.” Genetics 202, no. 4 (2016): 1523–48. https://doi.org/10.1534/genetics.115.184127.
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2016 | Journal Article | IST-REx-ID: 1518 | OA
Lohse, Konrad, Martin Chmelik, Simon Martin, and Nicholas H Barton. “Efficient Strategies for Calculating Blockwise Likelihoods under the Coalescent.” Genetics 202, no. 2 (2016): 775–86. https://doi.org/10.1534/genetics.115.183814.
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2016 | Thesis | IST-REx-ID: 1125
Novak, Sebastian. Evolutionary Proccesses in Variable Emvironments. IST Austria, 2016.
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2016 | Thesis | IST-REx-ID: 1131
Tugrul, Murat. Evolution of Transcriptional Regulatory Sequences. IST Austria, 2016.
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2016 | Journal Article | IST-REx-ID: 1158 | OA
Roux, Camille, Christelle Fraisse, Jonathan Romiguier, Youann Anciaux, Nicolas Galtier, and Nicolas Bierne. “Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence.” PLoS Biology 14, no. 12 (2016). https://doi.org/10.1371/journal.pbio.2000234.
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2016 | Journal Article | IST-REx-ID: 1172 | OA
Sachdeva, Himani, Mustansir Barma, and Madan Rao. “Nonequilibrium Description of de Novo Biogenesis and Transport through Golgi-like Cisternae.” Scientific Reports 6 (2016). https://doi.org/10.1038/srep38840.
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2015 | Journal Article | IST-REx-ID: 1542 | OA
Paixao, Tiago, Golnaz Badkobeh, Nicholas H Barton, Doğan Çörüş, Duccuong Dang, Tobias Friedrich, Per Lehre, Dirk Sudholt, Andrew Sutton, and Barbora Trubenova. “Toward a Unifying Framework for Evolutionary Processes.” Journal of Theoretical Biology 383 (2015): 28–43. https://doi.org/10.1016/j.jtbi.2015.07.011.
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2015 | Journal Article | IST-REx-ID: 1666 | OA
Tugrul, Murat, Tiago Paixao, Nicholas H Barton, and Gašper Tkačik. “Dynamics of Transcription Factor Binding Site Evolution.” PLoS Genetics 11, no. 11 (2015). https://doi.org/10.1371/journal.pgen.1005639.
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2015 | Journal Article | IST-REx-ID: 1681 | OA
Priklopil, Tadeas, and Krishnendu Chatterjee. “Evolution of Decisions in Population Games with Sequentially Searching Individuals.” Games 6, no. 4 (2015): 413–37. https://doi.org/10.3390/g6040413.
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2015 | Journal Article | IST-REx-ID: 1699 | OA
Uecker, Hildegard, Derek Setter, and Joachim Hermisson. “Adaptive Gene Introgression after Secondary Contact.” Journal of Mathematical Biology 70, no. 7 (2015): 1523–80. https://doi.org/10.1007/s00285-014-0802-y.
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2015 | Journal Article | IST-REx-ID: 1703
Broadhurst, Linda, Graham Fifield, Bindi Vanzella, and Melinda Pickup. “An Evaluation of the Genetic Structure of Seed Sources and the Maintenance of Genetic Diversity during Establishment of Two Yellow Box (Eucalyptus Melliodora) Seed-Production Areas.” Australian Journal of Botany 63, no. 5 (2015): 455–66. https://doi.org/10.1071/BT15023.
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2015 | Journal Article | IST-REx-ID: 1809 | OA
Trubenova, Barbora, Sebastian Novak, and Reinmar Hager. “Indirect Genetic Effects and the Dynamics of Social Interactions.” PLoS One 10, no. 5 (2015). https://doi.org/10.1371/journal.pone.0126907.
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2015 | Journal Article | IST-REx-ID: 1818 | OA
Polechova, Jitka, and Nicholas H Barton. “Limits to Adaptation along Environmental Gradients.” PNAS 112, no. 20 (2015): 6401–6. https://doi.org/10.1073/pnas.1421515112.
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2015 | Conference Paper | IST-REx-ID: 1835 | OA
Giacobbe, Mirco, Calin C Guet, Ashutosh Gupta, Thomas A Henzinger, Tiago Paixao, and Tatjana Petrov. “Model Checking Gene Regulatory Networks.” Lecture Notes in Computer Science. Springer, 2015. https://doi.org/10.1007/978-3-662-46681-0_47.
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2015 | Journal Article | IST-REx-ID: 1850 | OA
Novak, Sebastian, and Sylvia Cremer. “Fungal Disease Dynamics in Insect Societies: Optimal Killing Rates and the Ambivalent Effect of High Social Interaction Rates.” Journal of Theoretical Biology 372, no. 5 (2015): 54–64. https://doi.org/10.1016/j.jtbi.2015.02.018.
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2015 | Journal Article | IST-REx-ID: 1851 | OA
Priklopil, Tadeas, Eva Kisdi, and Mats Gyllenberg. “Evolutionarily Stable Mating Decisions for Sequentially Searching Females and the Stability of Reproductive Isolation by Assortative Mating.” Evolution 69, no. 4 (2015): 1015–26. https://doi.org/10.1111/evo.12618.
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2015 | Journal Article | IST-REx-ID: 1883 | OA
Keller-Schmidt, Stephanie, Murat Tugrul, Víctor Eguíluz, Emilio Hernandez Garcia, and Konstantin Klemm. “Anomalous Scaling in an Age-Dependent Branching Model.” Physical Review E Statistical Nonlinear and Soft Matter Physics 91, no. 2 (2015): 022803. https://doi.org/10.1103/PhysRevE.91.022803.
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2015 | Conference Paper | IST-REx-ID: 1430 | OA
Paixao, Tiago, Dirk Sudholt, Jorge Heredia, and Barbora Trubenova. “First Steps towards a Runtime Comparison of Natural and Artificial Evolution.” In Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation, 1455–62. ACM, 2015. https://doi.org/10.1145/2739480.2754758.
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2015 | Journal Article | IST-REx-ID: 1519 | OA
Barton, Nicholas H, and Maria Servedio. “The Interpretation of Selection Coefficients.” Evolution 69, no. 5 (2015): 1101–12. https://doi.org/10.1111/evo.12641.
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2014 | Journal Article | IST-REx-ID: 2023 | OA
Novak, Sebastian. “Habitat Heterogeneities versus Spatial Type Frequency Variances as Driving Forces of Dispersal Evolution.” Ecology and Evolution 4, no. 24 (2014): 4589–97. https://doi.org/10.1002/ece3.1289.
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2014 | Journal Article | IST-REx-ID: 2168 | OA
Kelleher, Jerome, Alison Etheridge, and Nicholas H Barton. “Coalescent Simulation in Continuous Space: Algorithms for Large Neighbourhood Size.” Theoretical Population Biology 95 (2014): 13–23. https://doi.org/10.1016/j.tpb.2014.05.001.
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2014 | Journal Article | IST-REx-ID: 2169 | OA
Barton, Nicholas H, Sebastian Novak, and Tiago Paixao. “Diverse Forms of Selection in Evolution and Computer Science.” PNAS 111, no. 29 (2014): 10398–99. https://doi.org/10.1073/pnas.1410107111.
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2014 | Journal Article | IST-REx-ID: 2170 | OA
Hearn, Jack, Graham Stone, Lynsey Bunnefeld, James Nicholls, Nicholas H Barton, and Konrad Lohse. “Likelihood-Based Inference of Population History from Low-Coverage de Novo Genome Assemblies.” Molecular Ecology 23, no. 1 (2014): 198–211. https://doi.org/10.1111/mec.12578.
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2014 | Journal Article | IST-REx-ID: 2174 | OA
De Vladar, Harold, and Nicholas H Barton. “Stability and Response of Polygenic Traits to Stabilizing Selection and Mutation.” Genetics 197, no. 2 (2014): 749–67. https://doi.org/10.1534/genetics.113.159111.
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2014 | Journal Article | IST-REx-ID: 537 | OA
Prizak, Roshan, Thomas Ezard, and Rebecca Hoyle. “Fitness Consequences of Maternal and Grandmaternal Effects.” Ecology and Evolution 4, no. 15 (2014): 3139–45. https://doi.org/10.1002/ece3.1150.
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2014 | Journal Article | IST-REx-ID: 1896 | OA
Kollár, Richard, Katarína Bod’ová, Jozef Nosek, and Ľubomír Tomáška. “Mathematical Model of Alternative Mechanism of Telomere Length Maintenance.” Physical Review E Statistical Nonlinear and Soft Matter Physics 89, no. 3 (2014). https://doi.org/10.1103/PhysRevE.89.032701.
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2014 | Journal Article | IST-REx-ID: 1908 | OA
Weissman, Daniel, and Oskar Hallatschek. “The Rate of Adaptation in Large Sexual Populations with Linear Chromosomes.” Genetics 196, no. 4 (2014): 1167–83. https://doi.org/10.1534/genetics.113.160705.
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2014 | Journal Article | IST-REx-ID: 1909 | OA
Ezard, Thomas, Roshan Prizak, and Rebecca Hoyle. “The Fitness Costs of Adaptation via Phenotypic Plasticity and Maternal Effects.” Functional Ecology 28, no. 3 (2014): 693–701. https://doi.org/10.1111/1365-2435.12207.
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2014 | Journal Article | IST-REx-ID: 1932 | OA
Trotter, Meredith, Daniel Weissman, Grant Peterson, Kayla Peck, and Joanna Masel. “Cryptic Genetic Variation Can Make "Irreducible Complexity" a Common Mode of Adaptation in Sexual Populations.” Evolution 68, no. 12 (2014): 3357–67. https://doi.org/10.1111/evo.12517.
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