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159 Publications

2018 | Journal Article | IST-REx-ID: 139   OA
Fraisse, C., Roux, C., Gagnaire, P., Romiguier, J., Faivre, N., Welch, J., & Bierne, N. (2018). The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: The effects of sequencing techniques and sampling strategies. PeerJ, 2018(7). https://doi.org/10.7717/peerj.5198
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2018 | Journal Article | IST-REx-ID: 33   OA
Bertl, J., Ringbauer, H., & Blum, M. (2018). Can secondary contact following range expansion be distinguished from barriers to gene flow? PeerJ, 2018(10). https://doi.org/10.7717/peerj.5325
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2018 | Journal Article | IST-REx-ID: 38   OA
Tavares, H., Whitley, A., Field, D., Bradley, D., Couchman, M., Copsey, L., … Coen, E. (2018). Selection and gene flow shape genomic islands that control floral guides. PNAS, 115(43), 11006–11011. https://doi.org/10.1073/pnas.1801832115
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2018 | Journal Article | IST-REx-ID: 40   OA
Barton, N. H. (2018). The consequences of an introgression event. Molecular Ecology, 27(24), 4973–4975. https://doi.org/10.1111/mec.14950
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2018 | Journal Article | IST-REx-ID: 564   OA
Barton, N. H., & Etheridge, A. (2018). Establishment in a new habitat by polygenic adaptation. Theoretical Population Biology, 122(7), 110–127. https://doi.org/10.1016/j.tpb.2017.11.007
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2018 | Journal Article | IST-REx-ID: 723   OA
Oliveto, P., Paixao, T., Pérez Heredia, J., Sudholt, D., & Trubenova, B. (2018). How to escape local optima in black box optimisation when non elitism outperforms elitism. Algorithmica, 80(5), 1604–1633. https://doi.org/10.1007/s00453-017-0369-2
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2018 | Thesis | IST-REx-ID: 200
Ringbauer, H. (2018). Inferring recent demography from spatial genetic structure. IST Austria. https://doi.org/10.15479/AT:ISTA:th_963
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2018 | Journal Article | IST-REx-ID: 565   OA
Charlesworth, B., & Barton, N. H. (2018). The spread of an inversion with migration and selection. Genetics, 208(1), 377–382. https://doi.org/10.1534/genetics.117.300426
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2018 | Journal Article | IST-REx-ID: 286
Ellis, T., Field, D., & Barton, N. H. (2018). Efficient inference of paternity and sibship inference given known maternity via hierarchical clustering. Molecular Ecology Resources, 18(5), 988–999. https://doi.org/10.1111/1755-0998.12782
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2018 | Journal Article | IST-REx-ID: 39   OA
Sachdeva, H., & Barton, N. H. (2018). Replicability of introgression under linked, polygenic selection. Genetics, 210(4), 1411–1427. https://doi.org/10.1534/genetics.118.301429
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2017 | Journal Article | IST-REx-ID: 1111   OA
Heredia, J., Trubenova, B., Sudholt, D., & Paixao, T. (2017). Selection limits to adaptive walks on correlated landscapes. Genetics, 205(2), 803–825. https://doi.org/10.1534/genetics.116.189340
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2017 | Journal Article | IST-REx-ID: 1077   OA
Fernandes Redondo, R. A., Vladar, H., Włodarski, T., & Bollback, J. P. (2017). Evolutionary interplay between structure, energy and epistasis in the coat protein of the fX174 phage family. Journal of the Royal Society Interface, 14(126). https://doi.org/10.1098/rsif.2016.0139
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2017 | Journal Article | IST-REx-ID: 910   OA
Novak, S., & Barton, N. H. (2017). When does frequency-independent selection maintain genetic variation? Genetics, 207(2), 653–668. https://doi.org/10.1534/genetics.117.300129
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2017 | Journal Article | IST-REx-ID: 953   OA
Charlesworth, D., Barton, N. H., & Charlesworth, B. (2017). The sources of adaptive evolution. Proceedings of the Royal Society of London Series B Biological Sciences, 284(1855). https://doi.org/10.1098/rspb.2016.2864
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2017 | Journal Article | IST-REx-ID: 1351
Giacobbe, M., Guet, C. C., Gupta, A., Henzinger, T. A., Paixao, T., & Petrov, T. (2017). Model checking the evolution of gene regulatory networks. Acta Informatica, 54(8), 765–787. https://doi.org/10.1007/s00236-016-0278-x
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2017 | Conference Paper | IST-REx-ID: 1112
Paixao, T., & Pérez Heredia, J. (2017). An application of stochastic differential equations to evolutionary algorithms. In Proceedings of the 14th ACM/SIGEVO Conference on Foundations of Genetic Algorithms (pp. 3–11). Copenhagen, Denmark: ACM. https://doi.org/10.1145/3040718.3040729
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2017 | Journal Article | IST-REx-ID: 954   OA
Lagator, M., Paixao, T., Barton, N. H., Bollback, J. P., & Guet, C. C. (2017). On the mechanistic nature of epistasis in a canonical cis-regulatory element. ELife, 6. https://doi.org/10.7554/eLife.25192
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2017 | Journal Article | IST-REx-ID: 1199   OA
Barton, N. H. (2017). How does epistasis influence the response to selection? Heredity, 118, 96–109. https://doi.org/10.1038/hdy.2016.109
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2017 | Journal Article | IST-REx-ID: 1074
Ringbauer, H., Coop, G., & Barton, N. H. (2017). Inferring recent demography from isolation by distance of long shared sequence blocks. Genetics, 205(3), 1335–1351. https://doi.org/10.1534/genetics.116.196220
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2017 | Journal Article | IST-REx-ID: 570   OA
Lagator, M., Sarikas, S., Acar, H., Bollback, J. P., & Guet, C. C. (2017). Regulatory network structure determines patterns of intermolecular epistasis. ELife, 6. https://doi.org/10.7554/eLife.28921
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2017 | Journal Article | IST-REx-ID: 626   OA
Barton, N. H., Etheridge, A., & Véber, A. (2017). The infinitesimal model: Definition derivation and implications. Theoretical Population Biology, 118, 50–73. https://doi.org/10.1016/j.tpb.2017.06.001
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2017 | Journal Article | IST-REx-ID: 955   OA
Friedlander, T., Prizak, R., Barton, N. H., & Tkacik, G. (2017). Evolution of new regulatory functions on biophysically realistic fitness landscapes. Nature Communications, 8(1). https://doi.org/10.1038/s41467-017-00238-8
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2017 | Journal Article | IST-REx-ID: 614   OA
Fraisse, C., Picard, M. A., & Vicoso, B. (2017). The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W. Nature Communications, 8(1), 1486. https://doi.org/10.1038/s41467-017-01663-5
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2017 | Journal Article | IST-REx-ID: 1063   OA
Uecker, H. (2017). Evolutionary rescue in randomly mating, selfing, and clonal populations. Evolution, 71(4), 845–858. https://doi.org/10.1111/evo.13191
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2017 | Journal Article | IST-REx-ID: 1169   OA
Novak, S., & Kollár, R. (2017). Spatial gene frequency waves under genotype dependent dispersal. Genetics, 205(1), 367–374. https://doi.org/10.1534/genetics.116.193946
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2017 | Thesis | IST-REx-ID: 6291
Payne, P. (2017). Bacterial herd and social immunity to phages. IST Austria.
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2017 | Journal Article | IST-REx-ID: 951   OA
Schmidt, T., Barton, N. H., Rasic, G., Turley, A., Montgomery, B., Iturbe Ormaetxe, I., … Turelli, M. (2017). Local introduction and heterogeneous spatial spread of dengue-suppressing Wolbachia through an urban population of Aedes Aegypti. PLoS Biology, 15(5). https://doi.org/10.1371/journal.pbio.2001894
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2017 | Journal Article | IST-REx-ID: 696
Lukacisinova, M., Novak, S., & Paixao, T. (2017). Stress induced mutagenesis: Stress diversity facilitates the persistence of mutator genes. PLoS Computational Biology, 13(7). https://doi.org/10.1371/journal.pcbi.1005609
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2017 | Journal Article | IST-REx-ID: 1191   OA
Kollár, R., & Novak, S. (2017). Existence of traveling waves for the generalized F–KPP equation. Bulletin of Mathematical Biology, 79(3), 525–559. https://doi.org/10.1007/s11538-016-0244-3
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2017 | Journal Article | IST-REx-ID: 1336   OA
Paixao, T., Pérez Heredia, J., Sudholt, D., & Trubenova, B. (2017). Towards a runtime comparison of natural and artificial evolution. Algorithmica, 78(2), 681–713. https://doi.org/10.1007/s00453-016-0212-1
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2017 | Journal Article | IST-REx-ID: 611
Bradley, D., Xu, P., Mohorianu, I., Whibley, A., Field, D., Tavares, H., … Coen, E. (2017). Evolution of flower color pattern through selection on regulatory small RNAs. Science, 358(6365), 925–928. https://doi.org/10.1126/science.aao3526
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2017 | Journal Article | IST-REx-ID: 990   OA
Sachdeva, H., & Barton, N. H. (2017). Divergence and evolution of assortative mating in a polygenic trait model of speciation with gene flow. Evolution; International Journal of Organic Evolution, 71(6), 1478–1493. https://doi.org/10.1111/evo.13252
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2017 | Journal Article | IST-REx-ID: 952   OA
Turelli, M., & Barton, N. H. (2017). Deploying dengue-suppressing Wolbachia: Robust models predict slow but effective spatial spread in Aedes aegypti. Theoretical Population Biology, 115, 45–60. https://doi.org/10.1016/j.tpb.2017.03.003
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2016 | Journal Article | IST-REx-ID: 1224
Teitel, Z., Pickup, M., Field, D., & Barrett, S. (2016). The dynamics of resource allocation and costs of reproduction in a sexually dimorphic, wind-pollinated dioecious plant. Plant Biology, 18(1), 98–103. https://doi.org/10.1111/plb.12336
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2016 | Journal Article | IST-REx-ID: 1356   OA
Barton, N. H. (2016). Sewall Wright on evolution in Mendelian populations and the “Shifting Balance.” Genetics, 202(1), 3–4. https://doi.org/10.1534/genetics.115.184796
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2016 | Conference Paper | IST-REx-ID: 1349   OA
Oliveto, P., Paixao, T., Heredia, J., Sudholt, D., & Trubenova, B. (2016). When non-elitism outperforms elitism for crossing fitness valleys. In Proceedings of the Genetic and Evolutionary Computation Conference 2016 (pp. 1163–1170). Denver, CO, USA: ACM. https://doi.org/10.1145/2908812.2908909
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2016 | Journal Article | IST-REx-ID: 1382
Ellis, T., & Field, D. (2016). Repeated gains in yellow and anthocyanin pigmentation in flower colour transitions in the Antirrhineae. Annals of Botany, 117(7), 1133–1140. https://doi.org/10.1093/aob/mcw043
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2016 | Journal Article | IST-REx-ID: 1357   OA
Barton, N. H. (2016). Richard Hudson and Norman Kaplan on the coalescent process. Genetics, 202(3), 865–866. https://doi.org/10.1534/genetics.116.187542
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2016 | Journal Article | IST-REx-ID: 1631   OA
Kelleher, J., Etheridge, A., Véber, A., & Barton, N. H. (2016). Spread of pedigree versus genetic ancestry in spatially distributed populations. Theoretical Population Biology, 108, 1–12. https://doi.org/10.1016/j.tpb.2015.10.008
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2016 | Thesis | IST-REx-ID: 1131
Tugrul, M. (2016). Evolution of transcriptional regulatory sequences. IST Austria.
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2016 | Journal Article | IST-REx-ID: 1409   OA
Abbott, R., Barton, N. H., & Good, J. (2016). Genomics of hybridization and its evolutionary consequences. Molecular Ecology, 25(11), 2325–2332. https://doi.org/10.1111/mec.13685
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2016 | Thesis | IST-REx-ID: 1125
Novak, S. (2016). Evolutionary proccesses in variable emvironments. IST Austria.
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2016 | Journal Article | IST-REx-ID: 1358
Friedlander, T., Prizak, R., Guet, C. C., Barton, N. H., & Tkacik, G. (2016). Intrinsic limits to gene regulation by global crosstalk. Nature Communications, 7. https://doi.org/10.1038/ncomms12307
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2016 | Journal Article | IST-REx-ID: 1195   OA
Franssen, S., Barton, N. H., & Schlötterer, C. (2016). Reconstruction of haplotype-blocks selected during experimental evolution. Molecular Biology and Evolution, 34(1), 174–184. https://doi.org/10.1093/molbev/msw210
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2016 | Journal Article | IST-REx-ID: 1241   OA
Uecker, H., & Hermisson, J. (2016). The role of recombination in evolutionary rescue. Genetics, 202(2), 721–732. https://doi.org/10.1534/genetics.115.180299
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2016 | Journal Article | IST-REx-ID: 1518   OA
Lohse, K., Chmelik, M., Martin, S., & Barton, N. H. (2016). Efficient strategies for calculating blockwise likelihoods under the coalescent. Genetics, 202(2), 775–786. https://doi.org/10.1534/genetics.115.183814
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2016 | Journal Article | IST-REx-ID: 1359   OA
Paixao, T., & Barton, N. H. (2016). The effect of gene interactions on the long-term response to selection. PNAS, 113(16), 4422–4427. https://doi.org/10.1073/pnas.1518830113
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2016 | Journal Article | IST-REx-ID: 1158   OA
Roux, C., Fraisse, C., Romiguier, J., Anciaux, Y., Galtier, N., & Bierne, N. (2016). Shedding light on the grey zone of speciation along a continuum of genomic divergence. PLoS Biology, 14(12). https://doi.org/10.1371/journal.pbio.2000234
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2016 | Journal Article | IST-REx-ID: 1172   OA
Sachdeva, H., Barma, M., & Rao, M. (2016). Nonequilibrium description of de novo biogenesis and transport through Golgi-like cisternae. Scientific Reports, 6. https://doi.org/10.1038/srep38840
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2016 | Journal Article | IST-REx-ID: 1420   OA
Bod’ová, K., Tkacik, G., & Barton, N. H. (2016). A general approximation for the dynamics of quantitative traits. Genetics, 202(4), 1523–1548. https://doi.org/10.1534/genetics.115.184127
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