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24 Publications

2018 | Journal Article | IST-REx-ID: 423   OA
P. Payne, L. Geyrhofer, N. H. Barton, and J. P. Bollback, “CRISPR-based herd immunity can limit phage epidemics in bacterial populations,” eLife, vol. 7, 2018.
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2018 | Journal Article | IST-REx-ID: 67
C. Igler, M. Lagator, G. Tkacik, J. P. Bollback, and C. C. Guet, “Evolutionary potential of transcription factors for gene regulatory rewiring,” Nature Ecology and Evolution, vol. 2, no. 10, pp. 1633–1643, 2018.
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2017 | Journal Article | IST-REx-ID: 1077   OA
R. A. Fernandes Redondo, H. Vladar, T. Włodarski, and J. P. Bollback, “Evolutionary interplay between structure, energy and epistasis in the coat protein of the fX174 phage family,” Journal of the Royal Society Interface, vol. 14, no. 126, 2017.
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2017 | Journal Article | IST-REx-ID: 954   OA
M. Lagator, T. Paixao, N. H. Barton, J. P. Bollback, and C. C. Guet, “On the mechanistic nature of epistasis in a canonical cis-regulatory element,” eLife, vol. 6, 2017.
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2017 | Journal Article | IST-REx-ID: 570   OA
M. Lagator, S. Sarikas, H. Acar, J. P. Bollback, and C. C. Guet, “Regulatory network structure determines patterns of intermolecular epistasis,” eLife, vol. 6, 2017.
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2017 | Thesis | IST-REx-ID: 6291
P. Payne, Bacterial herd and social immunity to phages. IST Austria, 2017.
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2017 | Thesis | IST-REx-ID: 820   OA
F. Jesse, The lac operon in the wild. IST Austria, 2017.
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2016 | Journal Article | IST-REx-ID: 1427   OA
M. Lagator, C. Igler, A. Moreno, C. C. Guet, and J. P. Bollback, “Epistatic interactions in the arabinose cis-regulatory element,” Molecular Biology and Evolution, vol. 33, no. 3, pp. 761–769, 2016.
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2016 | Thesis | IST-REx-ID: 1121
H. Acar, Selective barriers to horizontal gene transfer. IST Austria, 2016.
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2016 | Research Data | IST-REx-ID: 5554
M. Tugrul, Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase. IST Austria, 2016.
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2014 | Journal Article | IST-REx-ID: 1902
B. Hall, H. Acar, A. Nandipati, and M. Barlow, “Growth rates made easy,” Molecular Biology and Evolution, vol. 31, no. 1, pp. 232–238, 2014.
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2014 | Journal Article | IST-REx-ID: 2042   OA
A. Kupczok and J. P. Bollback, “Motif depletion in bacteriophages infecting hosts with CRISPR systems,” BMC Genomics, vol. 15, no. 1, 2014.
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2013 | Journal Article | IST-REx-ID: 2412   OA
A. Kupczok and J. P. Bollback, “Probabilistic models for CRISPR spacer content evolution ,” BMC Evolutionary Biology, vol. 13, no. 1, pp. 54–54, 2013.
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2013 | Journal Article | IST-REx-ID: 500   OA
M. Ward, S. Lycett, D. Avila, J. P. Bollback, and A. Leigh Brown, “Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza,” BMC Evolutionary Biology, vol. 13, no. 1, p. 222, 2013.
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2013 | Journal Article | IST-REx-ID: 501   OA
M. Cozzuol et al., “A new species of tapir from the Amazon,” Journal of Mammalogy, vol. 94, no. 6, pp. 1331–1345, 2013.
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2013 | Journal Article | IST-REx-ID: 2410   OA
R. A. Fernandes Redondo, A. Kupczok, G. Stift, and J. P. Bollback, “Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis,” Genome Announcements, vol. 1, no. 3, 2013.
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2013 | Journal Article | IST-REx-ID: 508   OA
E. Tarazona Santos et al., “Evolutionary dynamics of the human NADPH oxidase genes CYBB, CYBA, NCF2, and NCF4: Functional implications,” Molecular Biology and Evolution, vol. 30, no. 9, pp. 2157–2167, 2013.
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2012 | Journal Article | IST-REx-ID: 2963
F. Jesse and K. Riebel, “Social facilitation of male song by male and female conspecifics in the zebra finch, Taeniopygia guttata,” Behavioural Processes, vol. 91, no. 3, pp. 262–266, 2012.
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2012 | Journal Article | IST-REx-ID: 3289   OA
A. Pereira et al., “A vaccinia virus-driven interplay between the MKK4/7-JNK1/2 pathway and cytoskeleton reorganization,” Journal of Virology, vol. 86, no. 1, pp. 172–184, 2012.
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2012 | Journal Article | IST-REx-ID: 3247
S. Vilaça, R. A. Fernandes Redondo, L. Lins, and F. Santos, “Remaining genetic diversity in Brazilian Merganser (Mergus octosetaceus),” Conservation Genetics, vol. 13, no. 1, pp. 293–298, 2012.
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2012 | Journal Article | IST-REx-ID: 2411   OA
I. Ebersberger et al., “A consistent phylogenetic backbone for the fungi,” Molecular Biology and Evolution, vol. 29, no. 5, pp. 1319–1334, 2012.
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2011 | Journal Article | IST-REx-ID: 3387   OA
A. Kupczok, “Split based computation of majority rule supertrees,” BMC Evolutionary Biology, vol. 11, no. 205, 2011.
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2011 | Journal Article | IST-REx-ID: 3370   OA
A. Kupczok, “Consequences of different null models on the tree shape bias of supertree methods,” Systematic Biology, vol. 60, no. 2, pp. 218–225, 2011.
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2010 | Journal Article | IST-REx-ID: 2409   OA
A. Kupczok, H. Schmidt, and A. Von Haeseler, “Accuracy of phylogeny reconstruction methods combining overlapping gene data sets ,” Algorithms for Molecular Biology, vol. 5, no. 1, p. 37, 2010.
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