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24 Publications

2018 | Journal Article | IST-REx-ID: 423   OA
Payne, Pavel, Lukas Geyrhofer, Nicholas H Barton, and Jonathan P Bollback. “CRISPR-Based Herd Immunity Can Limit Phage Epidemics in Bacterial Populations.” ELife 7 (2018). https://doi.org/10.7554/eLife.32035.
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2018 | Journal Article | IST-REx-ID: 67
Igler, Claudia, Mato Lagator, Gasper Tkacik, Jonathan P Bollback, and Calin C Guet. “Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.” Nature Ecology and Evolution 2, no. 10 (2018): 1633–43. https://doi.org/10.1038/s41559-018-0651-y.
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2017 | Journal Article | IST-REx-ID: 1077   OA
Fernandes Redondo, Rodrigo A, Harold Vladar, Tomasz Włodarski, and Jonathan P Bollback. “Evolutionary Interplay between Structure, Energy and Epistasis in the Coat Protein of the FX174 Phage Family.” Journal of the Royal Society Interface 14, no. 126 (2017). https://doi.org/10.1098/rsif.2016.0139.
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2017 | Journal Article | IST-REx-ID: 954   OA
Lagator, Mato, Tiago Paixao, Nicholas H Barton, Jonathan P Bollback, and Calin C Guet. “On the Mechanistic Nature of Epistasis in a Canonical Cis-Regulatory Element.” ELife 6 (2017). https://doi.org/10.7554/eLife.25192.
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2017 | Journal Article | IST-REx-ID: 570   OA
Lagator, Mato, Srdjan Sarikas, Hande Acar, Jonathan P Bollback, and Calin C Guet. “Regulatory Network Structure Determines Patterns of Intermolecular Epistasis.” ELife 6 (2017). https://doi.org/10.7554/eLife.28921.
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2017 | Thesis | IST-REx-ID: 6291
Payne, Pavel. Bacterial Herd and Social Immunity to Phages. IST Austria, 2017.
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2017 | Thesis | IST-REx-ID: 820   OA
Jesse, Fabienne. The Lac Operon in the Wild. IST Austria, 2017. https://doi.org/10.15479/AT:ISTA:th_857.
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2016 | Journal Article | IST-REx-ID: 1427   OA
Lagator, Mato, Claudia Igler, Anaisa Moreno, Calin C Guet, and Jonathan P Bollback. “Epistatic Interactions in the Arabinose Cis-Regulatory Element.” Molecular Biology and Evolution 33, no. 3 (2016): 761–69. https://doi.org/10.1093/molbev/msv269.
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2016 | Thesis | IST-REx-ID: 1121
Acar, Hande. Selective Barriers to Horizontal Gene Transfer. IST Austria, 2016.
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2016 | Research Data | IST-REx-ID: 5554   OA
Tugrul, Murat. Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase. IST Austria, 2016. https://doi.org/10.15479/AT:ISTA:43.
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2014 | Journal Article | IST-REx-ID: 1902
Hall, Barry, Hande Acar, Anna Nandipati, and Miriam Barlow. “Growth Rates Made Easy.” Molecular Biology and Evolution 31, no. 1 (2014): 232–38. https://doi.org/10.1093/molbev/mst187.
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2014 | Journal Article | IST-REx-ID: 2042   OA
Kupczok, Anne, and Jonathan P Bollback. “Motif Depletion in Bacteriophages Infecting Hosts with CRISPR Systems.” BMC Genomics 15, no. 1 (2014). https://doi.org/10.1186/1471-2164-15-663.
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2013 | Journal Article | IST-REx-ID: 2412   OA
Kupczok, Anne, and Jonathan P Bollback. “Probabilistic Models for CRISPR Spacer Content Evolution .” BMC Evolutionary Biology 13, no. 1 (2013): 54–54. https://doi.org/10.1186/1471-2148-13-54.
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2013 | Journal Article | IST-REx-ID: 500   OA
Ward, Melissa, Samantha Lycett, Dorita Avila, Jonathan P Bollback, and Andrew Leigh Brown. “Evolutionary Interactions between Haemagglutinin and Neuraminidase in Avian Influenza.” BMC Evolutionary Biology 13, no. 1 (2013): 222. https://doi.org/10.1186/1471-2148-13-222.
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2013 | Journal Article | IST-REx-ID: 501   OA
Cozzuol, Mario, Camila Clozato, Elizete Holanda, Flávio Rodrigues, Samuel Nienow, Benoit De Thoisy, Rodrigo A Fernandes Redondo, and Fabrício Santos. “A New Species of Tapir from the Amazon.” Journal of Mammalogy 94, no. 6 (2013): 1331–45. https://doi.org/10.1644/12-MAMM-A-169.1.
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2013 | Journal Article | IST-REx-ID: 2410   OA
Fernandes Redondo, Rodrigo A, Anne Kupczok, Gertraud Stift, and Jonathan P Bollback. “Complete Genome Sequence of the Novel Phage MG-B1 Infecting Bacillus Weihenstephanensis.” Genome Announcements 1, no. 3 (2013). https://doi.org/10.1128/genomeA.00216-13.
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2013 | Journal Article | IST-REx-ID: 508   OA
Tarazona Santos, Eduardo, Moara Machado, Wagner Magalhães, Renee Chen, Fernanda Lyon, Laurie Burdett, Andrew Crenshaw, et al. “Evolutionary Dynamics of the Human NADPH Oxidase Genes CYBB, CYBA, NCF2, and NCF4: Functional Implications.” Molecular Biology and Evolution 30, no. 9 (2013): 2157–67. https://doi.org/10.1093/molbev/mst119.
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2012 | Journal Article | IST-REx-ID: 2963
Jesse, Fabienne, and Katharina Riebel. “Social Facilitation of Male Song by Male and Female Conspecifics in the Zebra Finch, Taeniopygia Guttata.” Behavioural Processes 91, no. 3 (2012): 262–66. https://doi.org/10.1016/j.beproc.2012.09.006.
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2012 | Journal Article | IST-REx-ID: 3289   OA
Pereira, Anna, Flávia Leite, Bruno Brasil, Jamaria Soares Martins, Alice Torres, Paulo Pimenta, Thais Souto Padrón, et al. “A Vaccinia Virus-Driven Interplay between the MKK4/7-JNK1/2 Pathway and Cytoskeleton Reorganization.” Journal of Virology 86, no. 1 (2012): 172–84. https://doi.org/10.1128/JVI.05638-11.
View | DOI | Download (ext.) | PubMed | Europe PMC
 
2012 | Journal Article | IST-REx-ID: 3247
Vilaça, Sibelle, Rodrigo A Fernandes Redondo, Lívia Lins, and Fabrício Santos. “Remaining Genetic Diversity in Brazilian Merganser (Mergus Octosetaceus).” Conservation Genetics 13, no. 1 (2012): 293–98. https://doi.org/10.1007/s10592-011-0262-5.
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2012 | Journal Article | IST-REx-ID: 2411   OA
Ebersberger, Ingo, Ricardo De Matos Simoes, Anne Kupczok, Matthias Gube, Erika Kothe, Kerstin Voigt, and Arndt Von Haeseler. “A Consistent Phylogenetic Backbone for the Fungi.” Molecular Biology and Evolution 29, no. 5 (2012): 1319–34. https://doi.org/10.1093/molbev/msr285.
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2011 | Journal Article | IST-REx-ID: 3387   OA
Kupczok, Anne. “Split Based Computation of Majority Rule Supertrees.” BMC Evolutionary Biology 11, no. 205 (2011). https://doi.org/10.1186/1471-2148-11-205.
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2011 | Journal Article | IST-REx-ID: 3370   OA
Kupczok, Anne. “Consequences of Different Null Models on the Tree Shape Bias of Supertree Methods.” Systematic Biology 60, no. 2 (2011): 218–25. https://doi.org/10.1093/sysbio/syq086.
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2010 | Journal Article | IST-REx-ID: 2409   OA
Kupczok, Anne, Heiko Schmidt, and Arndt Von Haeseler. “Accuracy of Phylogeny Reconstruction Methods Combining Overlapping Gene Data Sets .” Algorithms for Molecular Biology 5, no. 1 (2010): 37. https://doi.org/10.1186/1748-7188-5-37.
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