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218 Publications

2022 | Journal Article | IST-REx-ID: 10411
Bending to auxin: Fast acid growth for tropisms
L. Li, M.C. Gallei, J. Friml, Trends in Plant Science 27 (2022) 440–449.
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2022 | Journal Article | IST-REx-ID: 10841 | OA
Proteomic characterization of isolated Arabidopsis clathrin-coated vesicles reveals evolutionarily conserved and plant-specific components
D. Dahhan, G. Reynolds, J. Cárdenas, D. Eeckhout, A.J. Johnson, K. Yperman, W. Kaufmann, N. Vang, X. Yan, I. Hwang, A. Heese, G. De Jaeger, J. Friml, D. Van Damme, J. Pan, S. Bednarek, Plant Cell 34 (2022) 2150–2173.
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2022 | Journal Article | IST-REx-ID: 10016 | OA
Fourteen stations of auxin
J. Friml, Cold Spring Harbor Perspectives in Biology 14 (2022).
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2021 | Journal Article | IST-REx-ID: 8582 | OA
Cellular requirements for PIN polar cargo clustering in Arabidopsis thaliana
H. Li, D. von Wangenheim, X. Zhang, S. Tan, N. Darwish-Miranda, S. Naramoto, K.T. Wabnik, R. de Rycke, W. Kaufmann, D.J. Gütl, R. Tejos, P. Grones, M. Ke, X. Chen, J. Dettmer, J. Friml, New Phytologist 229 (2021) 351–369.
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2021 | Journal Article | IST-REx-ID: 8606 | OA
GhARF16-1 modulates leaf development by transcriptionally regulating the GhKNOX2-1 gene in cotton
P. He, Y. Zhang, H. Li, X. Fu, H. Shang, C. Zou, J. Friml, G. Xiao, Plant Biotechnology Journal 19 (2021) 548–562.
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2021 | Journal Article | IST-REx-ID: 8608 | OA
Salicylic acid regulates PIN2 auxin transporter hyper-clustering and root gravitropic growth via Remorin-dependent lipid nanodomain organization in Arabidopsis thaliana
M. Ke, Z. Ma, D. Wang, Y. Sun, C. Wen, D. Huang, Z. Chen, L. Yang, S. Tan, R. Li, J. Friml, Y. Miao, X. Chen, New Phytologist 229 (2021) 963–978.
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2021 | Journal Article | IST-REx-ID: 8824 | OA
Auxin-regulated reversible inhibition of TMK1 signaling by MAKR2 modulates the dynamics of root gravitropism
M. Marquès-Bueno, L. Armengot, L. Noack, J. Bareille, L. Rodriguez Solovey, M. Platre, V. Bayle, M. Liu, D. Opdenacker, S. Vanneste, B. Möller, Z. Nimchuk, T. Beeckman, A. Caño-Delgado, J. Friml, Y. Jaillais, Current Biology 31 (2021).
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2021 | Journal Article | IST-REx-ID: 8931 | OA
Developmental roles of auxin binding protein 1 in Arabidopsis thaliana
Z. Gelová, M.C. Gallei, M. Pernisová, G. Brunoud, X. Zhang, M. Glanc, L. Li, J. Michalko, Z. Pavlovicova, I. Verstraeten, H. Han, J. Hajny, R. Hauschild, M. Čovanová, M. Zwiewka, L. Hörmayer, M. Fendrych, T. Xu, T. Vernoux, J. Friml, Plant Science 303 (2021).
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2021 | Journal Article | IST-REx-ID: 8992 | OA
Pho-view of auxin: Reversible protein phosphorylation in auxin biosynthesis, transport and signaling
S. Tan, C. Luschnig, J. Friml, Molecular Plant 14 (2021) 151–165.
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2021 | Journal Article | IST-REx-ID: 9010 | OA
Modulation of plant root growth by nitrogen source-defined regulation of polar auxin transport
K. Ötvös, M. Marconi, A. Vega, J. O’Brien, A.J. Johnson, R. Abualia, L. Antonielli, J.C. Montesinos López, Y. Zhang, S. Tan, C. Cuesta, C. Artner, E. Bouguyon, A. Gojon, J. Friml, R.A. Gutiérrez, K.T. Wabnik, E. Benková, EMBO Journal 40 (2021).
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2021 | Journal Article | IST-REx-ID: 9189
INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance
Zhao Y, Wu L, Fu Q, Wang D, Li J, Yao B, Yu S, Jiang L, Qian J, Zhou X, Han L, Zhao S, Ma C, Zhang Y, Luo C, Dong Q, Li S, Zhang L, Jiang X, Li Y, Luo H, Li K, Yang J, Luo Q, Li L, Peng S, Huang H, Zuo Z, Liu C, Wang L, Li C, He X, Friml J, Du Y. 2021. INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance. Plant, Cell & Environment. 44(6), 1846–1857.
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2021 | Journal Article | IST-REx-ID: 9254 | OA
Cell kinetics of auxin transport and activity in Arabidopsis root growth and skewing
Y. Hu, M. Omary, Y. Hu, O. Doron, L. Hörmayer, Q. Chen, O. Megides, O. Chekli, Z. Ding, J. Friml, Y. Zhao, I. Tsarfaty, E. Shani, Nature Communications 12 (2021).
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2021 | Journal Article | IST-REx-ID: 9287 | OA
Systematic analysis of specific and nonspecific auxin effects on endocytosis and trafficking
M. Narasimhan, M.C. Gallei, S. Tan, A.J. Johnson, I. Verstraeten, L. Li, L. Rodriguez Solovey, H. Han, E. Himschoot, R. Wang, S. Vanneste, J. Sánchez-Simarro, F. Aniento, M. Adamowski, J. Friml, Plant Physiology 186 (2021) 1122–1142.
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2021 | Journal Article | IST-REx-ID: 10015 | OA
The Arabidopsis root tip (phospho)proteomes at growth-promoting versus growth-repressing conditions reveal novel root growth regulators
N. Nikonorova, E. Murphy, C. Fonseca de Lima, S. Zhu, B. van de Cotte, L. Vu, D. Balcerowicz, L. Li, X. Kong, G. De Rop, T. Beeckman, J. Friml, K. Vissenberg, P. Morris, Z. Ding, I. De Smet, Cells 10 (2021).
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2021 | Thesis | IST-REx-ID: 10083
Rapid cell growth regulation in Arabidopsis
L. Li, Rapid Cell Growth Regulation in Arabidopsis, IST Austria, 2021.
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2021 | Preprint | IST-REx-ID: 10095 | OA
Cell surface and intracellular auxin signalling for H+-fluxes in root growth
L. Li, I. Verstraeten, M. Roosjen, K. Takahashi, L. Rodriguez Solovey, J. Merrin, J. Chen, L. Shabala, W. Smet, H. Ren, S. Vanneste, S. Shabala, B. De Rybel, D. Weijers, T. Kinoshita, W.M. Gray, J. Friml, Research Square (n.d.).
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2021 | Journal Article | IST-REx-ID: 10223 | OA
Cell surface and intracellular auxin signalling for H+ fluxes in root growth
L. Li, I. Verstraeten, M. Roosjen, K. Takahashi, L. Rodriguez Solovey, J. Merrin, J. Chen, L. Shabala, W. Smet, H. Ren, S. Vanneste, S. Shabala, B. De Rybel, D. Weijers, T. Kinoshita, W.M. Gray, J. Friml, Nature 599 (2021) 273–277.
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2021 | Journal Article | IST-REx-ID: 10326
Catabolism of strigolactones by a carboxylesterase
E. Xu, L. Chai, S. Zhang, R. Yu, X. Zhang, C. Xu, Y. Hu, Nature Plants 7 (2021) 1495–1504.
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2021 | Journal Article | IST-REx-ID: 9290 | OA
AGC kinases and MAB4/MEL proteins maintain PIN polarity by limiting lateral diffusion in plant cells
M. Glanc, K. Van Gelderen, L. Hörmayer, S. Tan, S. Naramoto, X. Zhang, D. Domjan, L. Vcelarova, R. Hauschild, A.J. Johnson, E. de Koning, M. van Dop, E. Rademacher, S. Janson, X. Wei, G. Molnar, M. Fendrych, B. De Rybel, R. Offringa, J. Friml, Current Biology 31 (2021) 1918–1930.
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2021 | Journal Article | IST-REx-ID: 9298 | OA
Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)
Klionsky DJ et al. 2021. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy. 17(1), 1–382.
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2021 | Journal Article | IST-REx-ID: 9368 | OA
mRNA surveillance complex PELOTA-HBS1 eegulates phosphoinositide-sependent protein kinase1 and plant growth
W. Kong, S. Tan, Q. Zhao, D. Lin, Z. Xu, J. Friml, H. Xue, Plant Physiology 186 (2021) 2003–2020.
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2021 | Journal Article | IST-REx-ID: 9656 | OA
PIN-mediated polar auxin transport regulations in plant tropic responses
H. Han, M. Adamowski, L. Qi, S. Alotaibi, J. Friml, New Phytologist 232 (2021) 510–522.
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2021 | Journal Article | IST-REx-ID: 9657 | OA
GmPIN-dependent polar auxin transport is involved in soybean nodule development
Gao Z, Chen Z, Cui Y, Ke M, Xu H, Xu Q, Chen J, Li Y, Huang L, Zhao H, Huang D, Mai S, Xu T, Liu X, Li S, Guan Y, Yang W, Friml J, Petrášek J, Zhang J, Chen X. 2021. GmPIN-dependent polar auxin transport is involved in soybean nodule development. Plant Cell. 33(9), 2981–3003.
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2021 | Journal Article | IST-REx-ID: 9887 | OA
The TPLATE complex mediates membrane bending during plant clathrin-mediated endocytosis
A.J. Johnson, D.A. Dahhan, N. Gnyliukh, W. Kaufmann, V. Zheden, T. Costanzo, P. Mahou, M. Hrtyan, J. Wang, J.L. Aguilera Servin, D. van Damme, E. Beaurepaire, M. Loose, S.Y. Bednarek, J. Friml, Proceedings of the National Academy of Sciences 118 (2021).
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2021 | Journal Article | IST-REx-ID: 9909 | OA
Arabidopsis hypocotyl adventitious root formation is suppressed by ABA signaling
Y. Zeng, I. Verstraeten, H.K. Trinh, T. Heugebaert, C.V. Stevens, I. Garcia-Maquilon, P.L. Rodriguez, S. Vanneste, D. Geelen, Genes 12 (2021).
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2021 | Journal Article | IST-REx-ID: 9443 | OA
Synaptotagmins at the endoplasmic reticulum-plasma membrane contact sites maintain diacylglycerol homeostasis during abiotic stress
N. Ruiz-Lopez, J. Pérez-Sancho, A. Esteban Del Valle, R. Haslam, S. Vanneste, R. Catalá, C. Perea-Resa, D. Van Damme, S. García-Hernández, A. Albert, J. Vallarino, J. Lin, J. Friml, A. Macho, J. Salinas, A. Rosado, J. Napier, V. Amorim-Silva, M. Botella, Plant Cell 33 (2021) 2431–2453.
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2021 | Journal Article | IST-REx-ID: 8993 | OA
Naphthylphthalamic acid associates with and inhibits PIN auxin transporters
L. Abas, M. Kolb, J. Stadlmann, D.P. Janacek, K. Lukic, C. Schwechheimer, L.A. Sazanov, L. Mach, J. Friml, U.Z. Hammes, PNAS 118 (2021).
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2021 | Journal Article | IST-REx-ID: 9288 | OA
Seedling developmental defects upon blocking CINNAMATE-4-HYDROXYLASE are caused by perturbations in auxin transport
I. El Houari, C. Van Beirs, H. Arents, H. Han, A. Chanoca, D. Opdenacker, J. Pollier, V. Storme, W. Steenackers, M. Quareshy, R. Napier, T. Beeckman, J. Friml, B. De Rybel, W. Boerjan, B. Vanholme, New Phytologist 230 (2021) 2275–2291.
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2021 | Journal Article | IST-REx-ID: 10282 | OA
Mutually opposing activity of PIN7 splicing isoforms is required for auxin-mediated tropic responses in Arabidopsis thaliana
I. Kashkan, M. Hrtyan, K. Retzer, J. Humpolíčková, A. Jayasree, R. Filepová, Z. Vondráková, S. Simon, D. Rombaut, T.B. Jacobs, M.J. Frilander, J. Hejátko, J. Friml, J. Petrášek, K. Růžička, New Phytologist 233 (2021) 329–343.
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2021 | Book Chapter | IST-REx-ID: 10268
Automated time-lapse imaging and manipulation of cell divisions in Arabidopsis roots by vertical-stage confocal microscopy
L. Hörmayer, J. Friml, M. Glanc, in:, Plant Cell Division, Humana Press, 2021, pp. 105–114.
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2021 | Book Chapter | IST-REx-ID: 10267
Evaluation of gravitropism in non-seed plants
Y. Zhang, L. Li, J. Friml, in:, Plant Gravitropism, Springer Nature, 2021, pp. 43–51.
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2021 | Thesis | IST-REx-ID: 9992 | OA
Wound healing in the Arabidopsis root meristem
L. Hörmayer, Wound Healing in the Arabidopsis Root Meristem, IST Austria, 2021.
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2020 | Journal Article | IST-REx-ID: 7793 | OA
Direct ETTIN-auxin interaction controls chromatin states in gynoecium development
A. Kuhn, S. Ramans Harborough, H.M. McLaughlin, B. Natarajan, I. Verstraeten, J. Friml, S. Kepinski, L. Østergaard, ELife 9 (2020).
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2020 | Journal Article | IST-REx-ID: 7949 | OA
The CEP5 peptide promotes abiotic stress tolerance, as revealed by quantitative proteomics, and attenuates the AUX/IAA equilibrium in Arabidopsis
Smith S, Zhu S, Joos L, Roberts I, Nikonorova N, Vu L, Stes E, Cho H, Larrieu A, Xuan W, Goodall B, van de Cotte B, Waite J, Rigal A, R Harborough S, Persiau G, Vanneste S, Kirschner G, Vandermarliere E, Martens L, Stahl Y, Audenaert D, Friml J, Felix G, Simon R, Bennett M, Bishopp A, De Jaeger G, Ljung K, Kepinski S, Robert S, Nemhauser J, Hwang I, Gevaert K, Beeckman T, De Smet I. 2020. The CEP5 peptide promotes abiotic stress tolerance, as revealed by quantitative proteomics, and attenuates the AUX/IAA equilibrium in Arabidopsis. Molecular & Cellular Proteomics. 19(8), 1248–1262.
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2020 | Journal Article | IST-REx-ID: 8138 | OA
Strigolactones inhibit auxin feedback on PIN-dependent auxin transport canalization
J. Zhang, E. Mazur, J. Balla, M.C. Gallei, P. Kalousek, Z. Medveďová, Y. Li, Y. Wang, T. Prat, M.K. Vasileva, V. Reinöhl, S. Procházka, R. Halouzka, P. Tarkowski, C. Luschnig, P. Brewer, J. Friml, Nature Communications 11 (2020) 3508.
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2020 | Journal Article | IST-REx-ID: 8271
Origin of a subgenome and genome evolution of allotetraploid cotton species
P. He, Y. Zhang, G. Xiao, Molecular Plant 13 (2020) 1238–1240.
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2020 | Journal Article | IST-REx-ID: 8283 | OA
AcoMYB4, an Ananas comosus L. MYB transcription factor, functions in osmotic stress through negative regulation of ABA signaling
H. Chen, L. Lai, L. Li, L. Liu, B.H. Jakada, Y. Huang, Q. He, M. Chai, X. Niu, Y. Qin, International Journal of Molecular Sciences 21 (2020).
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2020 | Journal Article | IST-REx-ID: 8337 | OA
Cell-surface receptors enable perception of extracellular cytokinins
I. Antoniadi, O. Novák, Z. Gelová, A.J. Johnson, O. Plíhal, R. Simerský, V. Mik, T. Vain, E. Mateo-Bonmatí, M. Karady, M. Pernisová, L. Plačková, K. Opassathian, J. Hejátko, S. Robert, J. Friml, K. Doležal, K. Ljung, C. Turnbull, Nature Communications 11 (2020).
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2020 | Thesis | IST-REx-ID: 8589 | OA
Novel insights into PIN polarity regulation during Arabidopsis development
H. Han, Novel Insights into PIN Polarity Regulation during Arabidopsis Development, IST Austria, 2020.
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2020 | Journal Article | IST-REx-ID: 8607 | OA
Endocytosis of BRASSINOSTEROID INSENSITIVE1 is partly driven by a canonical tyrosine-based Motif
D. Liu, R. Kumar, C. LAN, A.J. Johnson, W. Siao, I. Vanhoutte, P. Wang, K. Bender, K. Yperman, S. Martins, X. Zhao, G. Vert, D. Van Damme, J. Friml, E. Russinova, Plant Cell 32 (2020) 3598–3612.
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2020 | Journal Article | IST-REx-ID: 6997 | OA
Auxin guides roots to avoid obstacles during gravitropic growth
Y. Zhang, J. Friml, New Phytologist 225 (2020) 1049–1052.
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2020 | Journal Article | IST-REx-ID: 7142 | OA
Auxin signalling in growth: Schrödinger's cat out of the bag
M.C. Gallei, C. Luschnig, J. Friml, Current Opinion in Plant Biology 53 (2020) 43–49.
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2020 | Journal Article | IST-REx-ID: 7204 | OA
Root growth adaptation is mediated by PYLs ABA receptor-PP2A protein phosphatase complex
Y. Li, Y. Wang, S. Tan, Z. Li, Z. Yuan, M. Glanc, D. Domjan, K. Wang, W. Xuan, Y. Guo, Z. Gong, J. Friml, J. Zhang, Advanced Science 7 (2020).
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2020 | Journal Article | IST-REx-ID: 7219
Adaptive growth: Shaping auxin-mediated root system architecture
G. Xiao, Y. Zhang, Trends in Plant Science 25 (2020) 121–123.
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2020 | Journal Article | IST-REx-ID: 7417 | OA
Regulation of acetylation of plant cell wall components is complex and responds to external stimuli
S.A. Sinclair, S. Gille, M. Pauly, U. Krämer, Plant Signaling & Behavior 15 (2020).
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2020 | Journal Article | IST-REx-ID: 7465 | OA
Clathrin-mediated trafficking and PIN trafficking are required for auxin canalization and vascular tissue formation in Arabidopsis
E. Mazur, M.C. Gallei, M. Adamowski, H. Han, H.S. Robert, J. Friml, Plant Science 293 (2020).
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2020 | Journal Article | IST-REx-ID: 7490 | OA
Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants
M. Narasimhan, A.J. Johnson, R. Prizak, W. Kaufmann, S. Tan, B.E. Casillas Perez, J. Friml, ELife 9 (2020).
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2020 | Journal Article | IST-REx-ID: 7497
Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid
Han L, Zhou X, Zhao Y, Zhu S, Wu L, He Y, Ping X, Lu X, Huang W, Qian J, Zhang L, Jiang X, Zhu D, Luo C, Li S, Dong Q, Fu Q, Deng K, Wang X, Wang L, Peng S, Wu J, Li W, Friml J, Zhu Y, He X, Du Y. 2020. Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid. Journal of Integrative Plant Biology. 62(9), 1433–1451.
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2020 | Journal Article | IST-REx-ID: 7540
In vitro shoot growth and adventitious rooting of Wikstroemia gemmata depends on light quality
I. Verstraeten, H. Buyle, S. Werbrouck, M.C. Van Labeke, D. Geelen, Israel Journal of Plant Sciences 67 (2020) 16–26.
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