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169 Publications

2020 | Journal Article | IST-REx-ID: 7582 | OA
Moturu, Taraka Ramji, Sansrity Sinha, Hymavathi Salava, Sravankumar Thula, Tomasz Nodzyński, Radka Svobodová Vařeková, Jiří Friml, and Sibu Simon. “Molecular Evolution and Diversification of Proteins Involved in MiRNA Maturation Pathway.” Plants 9, no. 3 (2020). https://doi.org/10.3390/plants9030299.
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2020 | Journal Article | IST-REx-ID: 7600 | OA
Tan, Shutang, Xixi Zhang, Wei Kong, Xiao-Li Yang, Gergely Molnar, Zuzana Vondráková, Roberta Filepová, Jan Petrášek, Jiří Friml, and Hong-Wei Xue. “The Lipid Code-Dependent Phosphoswitch PDK1–D6PK Activates PIN-Mediated Auxin Efflux in Arabidopsis.” Nature Plants 6 (2020): 556–69. https://doi.org/10.1038/s41477-020-0648-9.
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2020 | Preprint | IST-REx-ID: 7601 | OA
Wei, Zhuang, Shutang Tan, Tao Liu, Yuan Wu, Ji-Gang Lei, ZhengJun Chen, Jiří Friml, Hong-Wei Xue, and Kan Liao. “Plasmodesmata-like Intercellular Connections by Plant Remorin in Animal Cells.” BioRxiv. Cold Spring Harbor Laboratory, 2020.
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2020 | Journal Article | IST-REx-ID: 7619 | OA
Zhang, Xixi, Maciek Adamowski, Petra Marhavá, Shutang Tan, Yuzhou Zhang, Lesia Rodriguez Solovey, Marta Zwiewka, et al. “Arabidopsis Flippases Cooperate with ARF GTPase Exchange Factors to Regulate the Trafficking and Polarity of PIN Auxin Transporters.” The Plant Cell 32, no. 5 (2020): 1644–64. https://doi.org/10.1105/tpc.19.00869.
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2020 | Journal Article | IST-REx-ID: 7643
Han, Huibin, Hana Rakusova, Inge Verstraeten, Yuzhou Zhang, and Jiří Friml. “SCFTIR1/AFB Auxin Signaling for Bending Termination during Shoot Gravitropism.” Plant Physiology, 2020. https://doi.org/10.1104/pp.20.00212.
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2020 | Journal Article | IST-REx-ID: 7646
Lee, E, B Vila Nova Santana, E Samuels, F Benitez-Fuente, E Corsi, MA Botella, J Perez-Sancho, et al. “Rare Earth Elements Induce Cytoskeleton-Dependent and PI4P-Associated Rearrangement of SYT1/SYT5 ER-PM Contact Site Complexes in Arabidopsis.” Journal of Experimental Botany, 2020, eraa138. https://doi.org/10.1093/jxb/eraa138.
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2020 | Journal Article | IST-REx-ID: 7686
Xue, Huidan, Yuzhou Zhang, and Guanghui Xiao. “Neo-Gibberellin Signaling: Guiding the next Generation of the Green Revolution.” Trends in Plant Science, 2020. https://doi.org/10.1016/j.tplants.2020.04.001.
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2020 | Journal Article | IST-REx-ID: 7695 | OA
Wang, J, E Mylle, Alexander J Johnson, N Besbrugge, G De Jaeger, Jiří Friml, R Pleskot, and D van Damme. “High Temporal Resolution Reveals Simultaneous Plasma Membrane Recruitment of TPLATE Complex Subunits.” Plant Physiology, 2020. https://doi.org/10.1104/pp.20.00178.
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2020 | Journal Article | IST-REx-ID: 7697 | OA
Zhang, Yuzhou, Corinna Hartinger, Xiaojuan Wang, and Jiří Friml. “Directional Auxin Fluxes in Plants by Intramolecular Domain‐domain Co‐evolution of PIN Auxin Transporters.” New Phytologist, 2020. https://doi.org/10.1111/nph.16629.
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2020 | Journal Article | IST-REx-ID: 7793 | OA
Kuhn, André, Sigurd Ramans Harborough, Heather M McLaughlin, Bhavani Natarajan, Inge Verstraeten, Jiří Friml, Stefan Kepinski, and Lars Østergaard. “Direct ETTIN-Auxin Interaction Controls Chromatin States in Gynoecium Development.” ELife 9 (2020). https://doi.org/10.7554/elife.51787.
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2020 | Journal Article | IST-REx-ID: 7879 | OA
Han, Huibin, Hana Rakusová, Inge Verstraeten, Yuzhou Zhang, and Jiří Friml. “SCF TIR1/AFB Auxin Signaling for Bending Termination during Shoot Gravitropism.” Plant Physiology 183, no. 5 (2020): 37–40. https://doi.org/10.1104/pp.20.00212.
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2020 | Journal Article | IST-REx-ID: 7949 | OA
Smith, S, S Zhu, L Joos, I Roberts, N Nikonorova, LD Vu, E Stes, et al. “The CEP5 Peptide Promotes Abiotic Stress Tolerance, as Revealed by Quantitative Proteomics, and Attenuates the AUX/IAA Equilibrium in Arabidopsis.” Molecular & Celluluar Proteomics, n.d. https://doi.org/10.1074/mcp.ra119.001826.
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2020 | Journal Article | IST-REx-ID: 8002 | OA
Hörmayer, Lukas, Juan C Montesinos López, Petra Marhavá, Eva Benková, Saiko Yoshida, and Jiří Friml. “Wounding-Induced Changes in Cellular Pressure and Localized Auxin Signalling Spatially Coordinate Restorative Divisions in Roots.” Proceedings of the National Academy of Sciences 117, no. 26 (2020). https://doi.org/10.1073/pnas.2003346117.
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2020 | Journal Article | IST-REx-ID: 8139
Johnson, Alexander J, Nataliia Gnyliukh, Walter Kaufmann, Madhumitha Narasimhan, G Vert, SY Bednarek, and Jiří Friml. “Experimental Toolbox for Quantitative Evaluation of Clathrin-Mediated Endocytosis in the Plant Model Arabidopsis.” Journal of Cell Science, 2020. https://doi.org/10.1242/jcs.248062.
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2020 | Journal Article | IST-REx-ID: 8138 | OA
Zhang, J, E Mazur, J Balla, Michelle C Gallei, P Kalousek, Z Medveďová, Y Li, et al. “Strigolactones Inhibit Auxin Feedback on PIN-Dependent Auxin Transport Canalization.” Nature Communications 11, no. 1 (2020): 3508. https://doi.org/10.1038/s41467-020-17252-y.
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2019 | Journal Article | IST-REx-ID: 5908
Lee, Eunkyoung, Steffen Vanneste, Jessica Pérez-Sancho, Francisco Benitez-Fuente, Matthew Strelau, Alberto P. Macho, Miguel A. Botella, Jiří Friml, and Abel Rosado. “Ionic Stress Enhances ER–PM Connectivity via Phosphoinositide-Associated SYT1 Contact Site Expansion in Arabidopsis.” Proceedings of the National Academy of Sciences of the United States of America 116, no. 4 (2019): 1420–29. https://doi.org/10.1073/pnas.1818099116.
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2019 | Journal Article | IST-REx-ID: 6023 | OA
Yoshida, Saiko, Alja Van Der Schuren, Maritza Van Dop, Luc Van Galen, Shunsuke Saiga, Milad Adibi, Barbara Möller, et al. “A SOSEKI-Based Coordinate System Interprets Global Polarity Cues in Arabidopsis.” Nature Plants 5, no. 2 (2019): 160–66. https://doi.org/10.1038/s41477-019-0363-6.
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2019 | Journal Article | IST-REx-ID: 6104
Zwiewka, Marta, Agnieszka Bielach, Prashanth Tamizhselvan, Sharmila Madhavan, Eman Elrefaay Ryad, Shutang Tan, Mónika Hrtyan, et al. “Root Adaptation to H2O2-Induced Oxidative Stress by ARF-GEF BEN1- and Cytoskeleton-Mediated PIN2 Trafficking.” Plant and Cell Physiology 60, no. 2 (2019): 255–73. https://doi.org/10.1093/pcp/pcz001.
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2019 | Journal Article | IST-REx-ID: 6260 | OA
Oochi, A, Jakub Hajny, K Fukui, Y Nakao, Michelle C Gallei, M Quareshy, K Takahashi, et al. “Pinstatic Acid Promotes Auxin Transport by Inhibiting PIN Internalization.” Plant Physiology 180, no. 2 (2019): 1152–65. https://doi.org/10.1104/pp.19.00201.
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2019 | Journal Article | IST-REx-ID: 6261 | OA
Wang, Y, Z Gong, Jiří Friml, and J Zhang. “Nitrate Modulates the Differentiation of Root Distal Stem Cells.” Plant Physiology 180, no. 1 (2019): 22–25. https://doi.org/10.1104/pp.18.01305.
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2019 | Journal Article | IST-REx-ID: 6262 | OA
Rakusová, Hana, Huibin Han, Petr Valošek, and Jiří Friml. “Genetic Screen for Factors Mediating PIN Polarization in Gravistimulated Arabidopsis Thaliana Hypocotyls.” The Plant Journal 98, no. 6 (2019): 1048–59. https://doi.org/10.1111/tpj.14301.
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2019 | Thesis | IST-REx-ID: 6269 | OA
Narasimhan, Madhumitha. Clathrin-Mediated Endocytosis, Post-Endocytic Trafficking and Their Regulatory Controls in Plants . IST Austria, 2019. https://doi.org/10.15479/at:ista:th1075.
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2019 | Journal Article | IST-REx-ID: 6366 | OA
Bellstaedt, Julia, Jana Trenner, Rebecca Lippmann, Yvonne Poeschl, Xixi Zhang, Jiří Friml, Marcel Quint, and Carolin Delker. “A Mobile Auxin Signal Connects Temperature Sensing in Cotyledons with Growth Responses in Hypocotyls.” Plant Physiology 180, no. 2 (2019): 757–66. https://doi.org/10.1104/pp.18.01377.
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2019 | Journal Article | IST-REx-ID: 6377
Dejonghe, Wim, Isha Sharma, Bram Denoo, Steven De Munck, Qing Lu, Kiril Mishev, Haydar Bulut, et al. “Disruption of Endocytosis through Chemical Inhibition of Clathrin Heavy Chain Function.” Nature Chemical Biology 15, no. 6 (2019): 641–649. https://doi.org/10.1038/s41589-019-0262-1.
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2019 | Journal Article | IST-REx-ID: 6504
Zhang, Yuzhou, P He, X Ma, Z Yang, C Pang, J Yu, G Wang, Jiří Friml, and G Xiao. “Auxin-Mediated Statolith Production for Root Gravitropism.” New Phytologist 224, no. 2 (2019): 761–74. https://doi.org/10.1111/nph.15932.
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2019 | Journal Article | IST-REx-ID: 6611 | OA
Glanc, Matous, Matyas Fendrych, and Jiří Friml. “PIN2 Polarity Establishment in Arabidopsis in the Absence of an Intact Cytoskeleton.” Biomolecules 9, no. 6 (2019). https://doi.org/10.3390/biom9060222.
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2019 | Journal Article | IST-REx-ID: 6627 | OA
Adamowski, Maciek, Lanxin Li, and Jiří Friml. “Reorientation of Cortical Microtubule Arrays in the Hypocotyl of Arabidopsis Thaliana Is Induced by the Cell Growth Process and Independent of Auxin Signaling.” International Journal of Molecular Sciences 20, no. 13 (2019). https://doi.org/10.3390/ijms20133337.
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2019 | Journal Article | IST-REx-ID: 6943 | OA
Hörmayer, Lukas, and Jiří Friml. “Targeted Cell Ablation-Based Insights into Wound Healing and Restorative Patterning.” Current Opinion in Plant Biology 52 (2019): 124–30. https://doi.org/10.1016/j.pbi.2019.08.006.
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2019 | Journal Article | IST-REx-ID: 6999 | OA
Huang, D, Y Sun, Z Ma, M Ke, Y Cui, Z Chen, C Chen, et al. “Salicylic Acid-Mediated Plasmodesmal Closure via Remorin-Dependent Lipid Organization.” Proceedings of the National Academy of Sciences of the United States of America 116, no. 42 (2019): 21274–84. https://doi.org/10.1073/pnas.1911892116.
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2019 | Journal Article | IST-REx-ID: 7106
Skokan, Roman, Eva Medvecká, Tom Viaene, Stanislav Vosolsobě, Marta Zwiewka, Karel Müller, Petr Skůpa, et al. “PIN-Driven Auxin Transport Emerged Early in Streptophyte Evolution.” Nature Plants 5, no. 11 (2019): 1114–19. https://doi.org/10.1038/s41477-019-0542-5.
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2019 | Journal Article | IST-REx-ID: 7143
Sinclair, Scott A, and Jiří Friml. “Defying Gravity: A Plant’s Quest for Moisture.” Cell Research 29 (2019): 965–66. https://doi.org/10.1038/s41422-019-0254-4.
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2019 | Thesis | IST-REx-ID: 7172 | OA
Vasileva, Mina K. Molecular Mechanisms of Endomembrane Trafficking in Arabidopsis Thaliana. IST Austria, 2019. https://doi.org/10.15479/AT:ISTA:7172.
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2019 | Journal Article | IST-REx-ID: 7182 | OA
Alcântara, André, Jason Bosch, Fahimeh Nazari, Gesa Hoffmann, Michelle C Gallei, Simon Uhse, Martin A. Darino, et al. “Systematic Y2H Screening Reveals Extensive Effector-Complex Formation.” Frontiers in Plant Science 10, no. 11 (2019). https://doi.org/10.3389/fpls.2019.01437.
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2019 | Journal Article | IST-REx-ID: 7416
Sinclair, Scott A, and U. Krämer. “Generation of Effective Zinc-Deficient Agar-Solidified Media Allows Identification of Root Morphology Changes in Response to Zinc Limitation.” Plant Signaling & Behavior, 2019, 1687175. https://doi.org/10.1080/15592324.2019.1687175.
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2019 | Journal Article | IST-REx-ID: 7417
Sinclair, Scott A, S. Gille, M. Pauly, and U. Krämer. “Regulation of Acetylation of Plant Cell Wall Components Is Complex and Responds to External Stimuli.” Plant Signaling & Behavior, 2019, 1687185. https://doi.org/10.1080/15592324.2019.1687185.
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2019 | Journal Article | IST-REx-ID: 6778 | OA
Zhang, Yuzhou, G Xiao, X Wang, Xixi Zhang, and Jiří Friml. “Evolution of Fast Root Gravitropism in Seed Plants.” Nature Communications 10 (2019). https://doi.org/10.1038/s41467-019-11471-8.
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2019 | Journal Article | IST-REx-ID: 6351 | OA
Marhavá, Petra, Lukas Hörmayer, Saiko Yoshida, Peter Marhavý, Eva Benková, and Jiří Friml. “Re-Activation of Stem Cell Pathways for Pattern Restoration in Plant Wound Healing.” Cell 177, no. 4 (2019): 957–969.e13. https://doi.org/10.1016/j.cell.2019.04.015.
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2019 | Journal Article | IST-REx-ID: 6259
Cao, Min, Rong Chen, Pan Li, Yongqiang Yu, Rui Zheng, Danfeng Ge, Wei Zheng, et al. “TMK1-Mediated Auxin Signalling Regulates Differential Growth of the Apical Hook.” Nature 568 (2019): 240–43. https://doi.org/10.1038/s41586-019-1069-7.
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2018 | Journal Article | IST-REx-ID: 191 | OA
Grones, Peter, Melinda F Abas, Jakub Hajny, Angharad Jones, Sascha Waidmann, Jürgen Kleine Vehn, and Jiří Friml. “PID/WAG-Mediated Phosphorylation of the Arabidopsis PIN3 Auxin Transporter Mediates Polarity Switches during Gravitropism.” Scientific Reports 8, no. 1 (2018). https://doi.org/10.1038/s41598-018-28188-1.
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2018 | Journal Article | IST-REx-ID: 203 | OA
Abbas, Mohamad, García J Hernández, Stephan Pollmann, Sophia L Samodelov, Martina Kolb, Jirí Friml, Ulrich Z Hammes, Matias D Zurbriggen, Miguel Blázquez, and David Alabadí. “Auxin Methylation Is Required for Differential Growth in Arabidopsis.” PNAS 115, no. 26 (2018): 6864–69. https://doi.org/10.1073/pnas.1806565115.
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2018 | Journal Article | IST-REx-ID: 280
Gao, Zhen, Anna Daneva, Yuliya Salanenka, Matthias Van Durme, Marlies Huysmans, Zongcheng Lin, Freya De Winter, et al. “KIRA1 and ORESARA1 Terminate Flower Receptivity by Promoting Cell Death in the Stigma of Arabidopsis.” Nature Plants 4, no. 6 (2018): 365–75. https://doi.org/10.1038/s41477-018-0160-7.
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2018 | Journal Article | IST-REx-ID: 428 | OA
Salanenka, Yuliya, Inge Verstraeten, Christian Löfke, Kaori Tabata, Satoshi Naramoto, Matous Glanc, and Jiří Friml. “Gibberellin DELLA Signaling Targets the Retromer Complex to Redirect Protein Trafficking to the Plasma Membrane.” PNAS 115, no. 14 (2018): 3716–21. https://doi.org/10.1073/pnas.1721760115.
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2018 | Journal Article | IST-REx-ID: 442 | OA
Li, Lanxin, Gabriel Krens, Matyas Fendrych, and Jiří Friml. “Real-Time Analysis of Auxin Response, Cell Wall PH and Elongation in Arabidopsis Thaliana Hypocotyls.” Bio-Protocol 8, no. 1 (2018). https://doi.org/10.21769/BioProtoc.2685.
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2018 | Journal Article | IST-REx-ID: 449 | OA
Prat, Tomas, Jakub Hajny, Wim Grunewald, Mina K Vasileva, Gergely Molnar, Ricardo Tejos, Markus Schmid, Michael Sauer, and Jiří Friml. “WRKY23 Is a Component of the Transcriptional Network Mediating Auxin Feedback on PIN Polarity.” PLoS Genetics 14, no. 1 (2018). https://doi.org/10.1371/journal.pgen.1007177.
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2018 | Journal Article | IST-REx-ID: 462 | OA
Fan, Ligang, Lei Zhao, Wei Hu, Weina Li, Ondřej Novák, Miroslav Strnad, Sibu Simon, et al. “NHX Antiporters Regulate the PH of Endoplasmic Reticulum and Auxin-Mediated Development.” Plant, Cell and Environment 41 (2018): 850–64. https://doi.org/10.1111/pce.13153.
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2018 | Journal Article | IST-REx-ID: 5673 | OA
Glanc, Matous, Matyas Fendrych, and Jirí Friml. “Mechanistic Framework for Cell-Intrinsic Re-Establishment of PIN2 Polarity after Cell Division.” Nature Plants 4, no. 12 (2018): 1082–88. https://doi.org/10.1038/s41477-018-0318-3.
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2018 | Journal Article | IST-REx-ID: 5830 | OA
Zhang, Luosha, Xiong Shi, Yutao Zhang, Jiajing Wang, Jingwei Yang, Takashi Ishida, Wenqian Jiang, et al. “CLE9 Peptide-Induced Stomatal Closure Is Mediated by Abscisic Acid, Hydrogen Peroxide, and Nitric Oxide in Arabidopsis Thaliana.” Plant Cell and Environment, 2018. https://doi.org/10.1111/pce.13475.
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2018 | Book Chapter | IST-REx-ID: 408
Trinh, Hoang, Inge Verstraeten, and Danny Geelen. “In Vitro Assay for Induction of Adventitious Rooting on Intact Arabidopsis Hypocotyls.” In Root Development , 1761:95–102. Springer, 2018. https://doi.org/10.1007/978-1-4939-7747-5_7.
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2018 | Book Chapter | IST-REx-ID: 411
Karampelias, Michael, Ricardo Tejos, Jirí Friml, and Steffen Vanneste. “Optimized Whole Mount in Situ Immunolocalization for Arabidopsis Thaliana  Root Meristems and Lateral Root Primordia.” In Root Development. Methods and Protocols, edited by Daniela Ristova and Elke Barbez, 1761:131–43. MIMB. Springer, 2018. https://doi.org/10.1007/978-1-4939-7747-5_10.
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2018 | Journal Article | IST-REx-ID: 412 | OA
Adamowski, Maciek, Madhumitha Narasimhan, Urszula Kania, Matous Glanc, Geert De Jaeger, and Jirí Friml. “A Functional Study of AUXILIN LIKE1 and 2 Two Putative Clathrin Uncoating Factors in Arabidopsis.” The Plant Cell 30, no. 3 (2018): 700–716. https://doi.org/10.1105/tpc.17.00785.
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