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167 Publications

2020 | Journal Article | IST-REx-ID: 7582   OA
Moturu TR, Sinha S, Salava H, et al. Molecular evolution and diversification of proteins involved in miRNA maturation pathway. Plants. 2020;9(3):299. doi:10.3390/plants9030299
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2020 | Journal Article | IST-REx-ID: 7695   OA
Wang J, Mylle E, Johnson AJ, et al. High temporal resolution reveals simultaneous plasma membrane recruitment of TPLATE complex subunits. Plant Physiology. 2020. doi:10.1104/pp.20.00178
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2020 | Journal Article | IST-REx-ID: 7619   OA
Zhang X, Adamowski M, Marhavá P, et al. Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin transporters. The Plant Cell. 2020;32(5):1644-1664. doi:10.1105/tpc.19.00869
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2020 | Journal Article | IST-REx-ID: 7204   OA
Li Y, Wang Y, Tan S, et al. Root growth adaptation is mediated by PYLs ABA receptor-PP2A protein phosphatase complex. Advanced Science. 2020;7(3):1901455. doi:10.1002/advs.201901455
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2020 | Journal Article | IST-REx-ID: 7646
Lee E, Vila Nova Santana B, Samuels E, et al. Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis. Journal of Experimental Botany. 2020:eraa138. doi:10.1093/jxb/eraa138
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2020 | Journal Article | IST-REx-ID: 7540
Verstraeten I, Buyle H, Werbrouck S, Van Labeke MC, Geelen D. In vitro shoot growth and adventitious rooting of Wikstroemia gemmata depends on light quality. Israel Journal of Plant Sciences. 2020;67(1-2):16-26. doi:10.1163/22238980-20191110
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2020 | Journal Article | IST-REx-ID: 7879   OA
Han H, Rakusová H, Verstraeten I, Zhang Y, Friml J. SCF TIR1/AFB auxin signaling for bending termination during shoot gravitropism. Plant physiology. 2020;183(5):37-40. doi:10.1104/pp.20.00212
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2020 | Journal Article | IST-REx-ID: 7949   OA
Smith S, Zhu S, Joos L, et al. The CEP5 peptide promotes abiotic stress tolerance, as revealed by quantitative proteomics, and attenuates the AUX/IAA equilibrium in Arabidopsis. Molecular & Celluluar Proteomics. doi:10.1074/mcp.ra119.001826
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2020 | Journal Article | IST-REx-ID: 7142
Gallei MC, Luschnig C, Friml J. Auxin signalling in growth: Schrödinger’s cat out of the bag. Current Opinion in Plant Biology. 2020;53:43-49. doi:10.1016/j.pbi.2019.10.003
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2020 | Journal Article | IST-REx-ID: 6997   OA
Zhang Y, Friml J. Auxin guides roots to avoid obstacles during gravitropic growth. New Phytologist. 2020;225(3):1049-1052. doi:10.1111/nph.16203
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2020 | Journal Article | IST-REx-ID: 7490   OA
Narasimhan M, Johnson AJ, Prizak R, et al. Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants. eLife. 2020;9:e52067. doi:10.7554/eLife.52067
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2020 | Journal Article | IST-REx-ID: 7793   OA
Kuhn A, Ramans Harborough S, McLaughlin HM, et al. Direct ETTIN-auxin interaction controls chromatin states in gynoecium development. eLife. 2020;9:e51787. doi:10.7554/elife.51787
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2020 | Journal Article | IST-REx-ID: 7697   OA
Zhang Y, Hartinger C, Wang X, Friml J. Directional auxin fluxes in plants by intramolecular domain‐domain co‐evolution of PIN auxin transporters. New Phytologist. 2020. doi:10.1111/nph.16629
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2020 | Journal Article | IST-REx-ID: 7427
Tan S, Abas MF, Verstraeten I, et al. Salicylic acid targets protein phosphatase 2A to attenuate growth in plants. Current Biology. 30(3):381-395.e8. doi:10.1016/j.cub.2019.11.058
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2020 | Journal Article | IST-REx-ID: 7465   OA
Mazur E, Gallei MC, Adamowski M, Han H, Robert HS, Friml J. Clathrin-mediated trafficking and PIN trafficking are required for auxin canalization and vascular tissue formation in Arabidopsis. Plant Science. 2020;293(4):110414. doi:10.1016/j.plantsci.2020.110414
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2020 | Journal Article | IST-REx-ID: 7643
Han H, Rakusova H, Verstraeten I, Zhang Y, Friml J. SCFTIR1/AFB auxin signaling for bending termination during shoot gravitropism. Plant Physiology. 2020. doi:10.1104/pp.20.00212
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2020 | Journal Article | IST-REx-ID: 7686
Xue H, Zhang Y, Xiao G. Neo-gibberellin signaling: Guiding the next generation of the green revolution. Trends in Plant Science. 2020. doi:10.1016/j.tplants.2020.04.001
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2020 | Journal Article | IST-REx-ID: 7600   OA
Tan S, Zhang X, Kong W, et al. The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin efflux in Arabidopsis. Nature Plants. 2020;6:556-569. doi:10.1038/s41477-020-0648-9
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2020 | Journal Article | IST-REx-ID: 8002   OA
Hörmayer L, Montesinos López JC, Marhavá P, Benková E, Yoshida S, Friml J. Wounding-induced changes in cellular pressure and localized auxin signalling spatially coordinate restorative divisions in roots. Proceedings of the National Academy of Sciences. 2020:202003346. doi:10.1073/pnas.2003346117
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2020 | Journal Article | IST-REx-ID: 7219
Xiao G, Zhang Y. Adaptive growth: Shaping auxin-mediated root system architecture. Trends in Plant Science. 2020;25(2):121-123. doi:10.1016/j.tplants.2019.12.001
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2020 | Journal Article | IST-REx-ID: 7497
Han L, Zhou X, Zhao Y, et al. Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid. Journal of Integrative Plant Biology. 2020. doi:10.1111/jipb.12905
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2020 | Journal Article | IST-REx-ID: 7500   OA
Mazur E, Kulik I, Hajny J, Friml J. Auxin canalization and vascular tissue formation by TIR1/AFB-mediated auxin signaling in arabidopsis. New Phytologist. 2020. doi:10.1111/nph.16446
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2020 | Preprint | IST-REx-ID: 7601   OA
Wei Z, Tan S, Liu T, et al. Plasmodesmata-like intercellular connections by plant remorin in animal cells. bioRxiv. 2020.
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2019 | Journal Article | IST-REx-ID: 6104
Zwiewka M, Bielach A, Tamizhselvan P, et al. Root adaptation to H2O2-induced oxidative stress by ARF-GEF BEN1- and cytoskeleton-mediated PIN2 trafficking. Plant and Cell Physiology. 2019;60(2):255-273. doi:10.1093/pcp/pcz001
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2019 | Journal Article | IST-REx-ID: 6351   OA
Marhavá P, Hörmayer L, Yoshida S, Marhavy P, Benková E, Friml J. Re-activation of stem cell pathways for pattern restoration in plant wound healing. Cell. 2019;177(4):957-969.e13. doi:10.1016/j.cell.2019.04.015
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2019 | Journal Article | IST-REx-ID: 6262   OA
Rakusová H, Han H, Valošek P, Friml J. Genetic screen for factors mediating PIN polarization in gravistimulated Arabidopsis thaliana hypocotyls. The Plant Journal. 2019;98(6):1048-1059. doi:10.1111/tpj.14301
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2019 | Journal Article | IST-REx-ID: 6611   OA
Glanc M, Fendrych M, Friml J. PIN2 polarity establishment in arabidopsis in the absence of an intact cytoskeleton. Biomolecules. 2019;9(6). doi:10.3390/biom9060222
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2019 | Journal Article | IST-REx-ID: 7417
Sinclair SA, Gille S, Pauly M, Krämer U. Regulation of acetylation of plant cell wall components is complex and responds to external stimuli. Plant Signaling & Behavior. 2019:1687185. doi:10.1080/15592324.2019.1687185
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2019 | Journal Article | IST-REx-ID: 6023   OA
Yoshida S, Van Der Schuren A, Van Dop M, et al. A SOSEKI-based coordinate system interprets global polarity cues in arabidopsis. Nature Plants. 2019;5(2):160-166. doi:10.1038/s41477-019-0363-6
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2019 | Journal Article | IST-REx-ID: 6504
Zhang Y, He P, Ma X, et al. Auxin-mediated statolith production for root gravitropism. New Phytologist. 2019;224(2):761-774. doi:10.1111/nph.15932
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2019 | Thesis | IST-REx-ID: 7172   OA
Vasileva MK. Molecular Mechanisms of Endomembrane Trafficking in Arabidopsis Thaliana. IST Austria; 2019. doi:10.15479/AT:ISTA:7172
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2019 | Journal Article | IST-REx-ID: 6377
Dejonghe W, Sharma I, Denoo B, et al. Disruption of endocytosis through chemical inhibition of clathrin heavy chain function. Nature Chemical Biology. 2019;15(6):641–649. doi:10.1038/s41589-019-0262-1
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2019 | Thesis | IST-REx-ID: 6269   OA
Narasimhan M. Clathrin-Mediated Endocytosis, Post-Endocytic Trafficking and Their Regulatory Controls in Plants . IST Austria; 2019. doi:10.15479/at:ista:th1075
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2019 | Journal Article | IST-REx-ID: 6260   OA
Oochi A, Hajny J, Fukui K, et al. Pinstatic acid promotes auxin transport by inhibiting PIN internalization. Plant Physiology. 2019;180(2):1152-1165. doi:10.1104/pp.19.00201
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2019 | Journal Article | IST-REx-ID: 6943   OA
Hörmayer L, Friml J. Targeted cell ablation-based insights into wound healing and restorative patterning. Current Opinion in Plant Biology. 2019;52:124-130. doi:10.1016/j.pbi.2019.08.006
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2019 | Journal Article | IST-REx-ID: 7143
Sinclair SA, Friml J. Defying gravity: a plant’s quest for moisture. Cell Research. 2019;29:965-966. doi:10.1038/s41422-019-0254-4
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2019 | Journal Article | IST-REx-ID: 6366   OA
Bellstaedt J, Trenner J, Lippmann R, et al. A mobile auxin signal connects temperature sensing in cotyledons with growth responses in hypocotyls. Plant Physiology. 2019;180(2):757-766. doi:10.1104/pp.18.01377
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2019 | Journal Article | IST-REx-ID: 5908
Lee E, Vanneste S, Pérez-Sancho J, et al. Ionic stress enhances ER–PM connectivity via phosphoinositide-associated SYT1 contact site expansion in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 2019;116(4):1420-1429. doi:10.1073/pnas.1818099116
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2019 | Journal Article | IST-REx-ID: 6259
Cao M, Chen R, Li P, et al. TMK1-mediated auxin signalling regulates differential growth of the apical hook. Nature. 2019;568:240-243. doi:10.1038/s41586-019-1069-7
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2019 | Journal Article | IST-REx-ID: 6261   OA
Wang Y, Gong Z, Friml J, Zhang J. Nitrate modulates the differentiation of root distal stem cells. Plant Physiology. 2019;180(1):22-25. doi:10.1104/pp.18.01305
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2019 | Journal Article | IST-REx-ID: 7106
Skokan R, Medvecká E, Viaene T, et al. PIN-driven auxin transport emerged early in streptophyte evolution. Nature Plants. 2019;5(11):1114-1119. doi:10.1038/s41477-019-0542-5
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2019 | Journal Article | IST-REx-ID: 7182   OA
Alcântara A, Bosch J, Nazari F, et al. Systematic Y2H screening reveals extensive effector-complex formation. Frontiers in Plant Science. 2019;10(11). doi:10.3389/fpls.2019.01437
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2019 | Journal Article | IST-REx-ID: 6778   OA
Zhang Y, Xiao G, Wang X, Zhang X, Friml J. Evolution of fast root gravitropism in seed plants. Nature Communications. 2019;10. doi:10.1038/s41467-019-11471-8
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2019 | Journal Article | IST-REx-ID: 7416
Sinclair SA, Krämer U. Generation of effective zinc-deficient agar-solidified media allows identification of root morphology changes in response to zinc limitation. Plant Signaling & Behavior. 2019:1687175. doi:10.1080/15592324.2019.1687175
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2019 | Journal Article | IST-REx-ID: 6627   OA
Adamowski M, Li L, Friml J. Reorientation of cortical microtubule arrays in the hypocotyl of arabidopsis thaliana is induced by the cell growth process and independent of auxin signaling. International Journal of Molecular Sciences. 2019;20(13):3337. doi:10.3390/ijms20133337
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2019 | Journal Article | IST-REx-ID: 6999   OA
Huang D, Sun Y, Ma Z, et al. Salicylic acid-mediated plasmodesmal closure via Remorin-dependent lipid organization. Proceedings of the National Academy of Sciences of the United States of America. 2019;116(42):21274-21284. doi:10.1073/pnas.1911892116
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2018 | Journal Article | IST-REx-ID: 148   OA
Nishiyama T, Sakayama H, De Vries J, et al. The Chara genome: Secondary complexity and implications for plant terrestrialization. Cell. 2018;174(2):448-464.e24. doi:10.1016/j.cell.2018.06.033
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2018 | Book Chapter | IST-REx-ID: 408
Trinh H, Verstraeten I, Geelen D. In vitro assay for induction of adventitious rooting on intact arabidopsis hypocotyls. In: Root Development . Vol 1761. Springer; 2018:95-102. doi:10.1007/978-1-4939-7747-5_7
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2018 | Book Chapter | IST-REx-ID: 411
Karampelias M, Tejos R, Friml J, Vanneste S. Optimized whole mount in situ immunolocalization for Arabidopsis thaliana  root meristems and lateral root primordia. In: Ristova D, Barbez E, eds. Root Development. Methods and Protocols. Vol 1761. MIMB. Springer; 2018:131-143. doi:10.1007/978-1-4939-7747-5_10
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2018 | Journal Article | IST-REx-ID: 428   OA
Salanenka Y, Verstraeten I, Löfke C, et al. Gibberellin DELLA signaling targets the retromer complex to redirect protein trafficking to the plasma membrane. PNAS. 2018;115(14):3716-3721. doi:10.1073/pnas.1721760115
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2018 | Journal Article | IST-REx-ID: 442   OA
Li L, Krens G, Fendrych M, Friml J. Real-time analysis of auxin response, cell wall pH and elongation in Arabidopsis thaliana Hypocotyls. Bio-protocol. 2018;8(1). doi:10.21769/BioProtoc.2685
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2018 | Journal Article | IST-REx-ID: 5830   OA
Zhang L, Shi X, Zhang Y, et al. CLE9 peptide-induced stomatal closure is mediated by abscisic acid, hydrogen peroxide, and nitric oxide in arabidopsis thaliana. Plant Cell and Environment. 2018. doi:10.1111/pce.13475
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2018 | Journal Article | IST-REx-ID: 203   OA
Abbas M, Hernández GJ, Pollmann S, et al. Auxin methylation is required for differential growth in Arabidopsis. PNAS. 2018;115(26):6864-6869. doi:10.1073/pnas.1806565115
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2018 | Journal Article | IST-REx-ID: 462   OA
Fan L, Zhao L, Hu W, et al. NHX antiporters regulate the pH of endoplasmic reticulum and auxin-mediated development. Plant, Cell and Environment. 2018;41:850-864. doi:10.1111/pce.13153
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2018 | Journal Article | IST-REx-ID: 412
Adamowski M, Narasimhan M, Kania U, Glanc M, De Jaeger G, Friml J. A functional study of AUXILIN LIKE1 and 2 two putative clathrin uncoating factors in Arabidopsis. The Plant Cell. 2018;30(3):700-716. doi:10.1105/tpc.17.00785
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2018 | Journal Article | IST-REx-ID: 146   OA
Shi CL, Von Wangenheim D, Herrmann U, et al. The dynamics of root cap sloughing in Arabidopsis is regulated by peptide signalling. Nature Plants. 2018;4(8):596-604. doi:10.1038/s41477-018-0212-z
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2018 | Journal Article | IST-REx-ID: 158   OA
Robert H, Park C, Gutièrrez C, et al. Maternal auxin supply contributes to early embryo patterning in Arabidopsis. Nature Plants. 2018;4(8):548-553. doi:10.1038/s41477-018-0204-z
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2018 | Journal Article | IST-REx-ID: 191   OA
Grones P, Abas MF, Hajny J, et al. PID/WAG-mediated phosphorylation of the Arabidopsis PIN3 auxin transporter mediates polarity switches during gravitropism. Scientific Reports. 2018;8(1). doi:10.1038/s41598-018-28188-1
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2018 | Journal Article | IST-REx-ID: 280
Gao Z, Daneva A, Salanenka Y, et al. KIRA1 and ORESARA1 terminate flower receptivity by promoting cell death in the stigma of Arabidopsis. Nature Plants. 2018;4(6):365-375. doi:10.1038/s41477-018-0160-7
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2018 | Journal Article | IST-REx-ID: 5673   OA
Glanc M, Fendrych M, Friml J. Mechanistic framework for cell-intrinsic re-establishment of PIN2 polarity after cell division. Nature Plants. 2018;4(12):1082-1088. doi:10.1038/s41477-018-0318-3
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2018 | Journal Article | IST-REx-ID: 449
Prat T, Hajny J, Grunewald W, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genetics. 2018;14(1). doi:10.1371/journal.pgen.1007177
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2018 | Journal Article | IST-REx-ID: 913   OA
Tejos R, Rodríguez Furlán C, Adamowski M, Sauer M, Norambuena L, Friml J. PATELLINS are regulators of auxin mediated PIN1 relocation and plant development in Arabidopsis thaliana. Journal of Cell Science. 2018;131(2). doi:10.1242/jcs.204198
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2018 | Journal Article | IST-REx-ID: 14   OA
Hille S, Akhmanova M, Glanc M, Johnson AJ, Friml J. Relative contribution of PIN-containing secretory vesicles and plasma membrane PINs to the directed auxin transport: Theoretical estimation. International Journal of Molecular Sciences. 2018;19(11). doi:10.3390/ijms19113566
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2018 | Journal Article | IST-REx-ID: 147   OA
Kania U, Nodzyński T, Lu Q, et al. The inhibitor Endosidin 4 targets SEC7 domain-type ARF GTPase exchange factors and interferes with sub cellular trafficking in eukaryotes. The Plant Cell. 2018;30(10):2553-2572. doi:10.1105/tpc.18.00127
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2018 | Journal Article | IST-REx-ID: 192   OA
Fendrych M, Akhmanova M, Merrin J, et al. Rapid and reversible root growth inhibition by TIR1 auxin signalling. Nature Plants. 2018;4(7):453-459. doi:10.1038/s41477-018-0190-1
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2017 | Journal Article | IST-REx-ID: 1159   OA
Steenackers W, Klíma P, Quareshy M, et al. Cis-cinnamic acid is a novel natural auxin efflux inhibitor that promotes lateral root formation. Plant Physiology. 2017;173(1):552-565. doi:10.1104/pp.16.00943
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2017 | Journal Article | IST-REx-ID: 799   OA
Kitakura S, Adamowski M, Matsuura Y, et al. BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive trafficking at the trans-Golgi network/early endosome in Arabidopsis thaliana. Plant and Cell Physiology. 2017;58(10). doi:10.1093/pcp/pcx118
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2017 | Journal Article | IST-REx-ID: 946   OA
Von Wangenheim D, Hauschild R, Fendrych M, Barone V, Benková E, Friml J. Live tracking of moving samples in confocal microscopy for vertically grown roots. eLife. 2017;6:e26792. doi:10.7554/eLife.26792
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2017 | Journal Article | IST-REx-ID: 1078   OA
Von Wangenheim D, Hauschild R, Friml J. Light sheet fluorescence microscopy of plant roots growing on the surface of a gel. Journal of visualized experiments JoVE. 2017;2017(119):e55044. doi:10.3791/55044
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2017 | Journal Article | IST-REx-ID: 657   OA
Möller B, Ten Hove C, Xiang D, et al. Auxin response cell autonomously controls ground tissue initiation in the early arabidopsis embryo. PNAS. 2017;114(12):E2533-E2539. doi:10.1073/pnas.1616493114
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2017 | Journal Article | IST-REx-ID: 669   OA
Synek L, Vukašinović N, Kulich I, et al. EXO70C2 is a key regulatory factor for optimal tip growth of pollen. Plant Physiology. 2017;174(1):223-240. doi:10.1104/pp.16.01282
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2017 | Journal Article | IST-REx-ID: 722   OA
Morris E, Griffiths M, Golebiowska A, et al. Shaping 3D root system architecture. Current Biology. 2017;27(17):R919-R930. doi:10.1016/j.cub.2017.06.043
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2017 | Book Chapter | IST-REx-ID: 545   OA
Mazur E, Friml J. Vascular tissue development and regeneration in the model plant arabidopsis. In: Jurić S, ed. Plant Engineering. Plant Engineering. InTech; 2017:113-140. doi:10.5772/intechopen.69712
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2017 | Research Data | IST-REx-ID: 5565
Von Wangenheim D, Hauschild R, Friml J. Light Sheet Fluorescence Microscopy of Plant Roots Growing on the Surface of a Gel. IST Austria; 2017. doi:10.15479/AT:ISTA:66
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2017 | Journal Article | IST-REx-ID: 1110   OA
Kuhn B, Nodzyński T, Errafi S, et al. Flavonol-induced changes in PIN2 polarity and auxin transport in the Arabidopsis thaliana rol1-2 mutant require phosphatase activity. Scientific Reports. 2017;7. doi:10.1038/srep41906
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2017 | Thesis | IST-REx-ID: 1127
Prat T. Identification of Novel Regulators of PIN Polarity and Development of Novel Auxin Sensor. IST Austria; 2017.
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2017 | Thesis | IST-REx-ID: 938   OA
Adamowski M. Investigations into Cell Polarity and Trafficking in the Plant Model Arabidopsis Thaliana . IST Austria; 2017. doi:10.15479/AT:ISTA:th_842
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2016 | Journal Article | IST-REx-ID: 1147   OA
Balla J, Medved’Ová Z, Kalousek P, et al. Auxin flow mediated competition between axillary buds to restore apical dominance. Scientific Reports. 2016;6. doi:10.1038/srep35955
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2016 | Journal Article | IST-REx-ID: 1212   OA
Rakusová H, Abbas M, Han H, Song S, Robert H, Friml J. Termination of shoot gravitropic responses by auxin feedback on PIN3 polarity. Current Biology. 2016;26(22):3026-3032. doi:10.1016/j.cub.2016.08.067
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2016 | Journal Article | IST-REx-ID: 1344   OA
Fendrych M, Leung J, Friml J. TIR1 AFB Aux IAA auxin perception mediates rapid cell wall acidification and growth of Arabidopsis hypocotyls. eLife. 2016;5. doi:10.7554/eLife.19048
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2016 | Journal Article | IST-REx-ID: 1274
Mazur E, Benková E, Friml J. Vascular cambium regeneration and vessel formation in wounded inflorescence stems of Arabidopsis. Scientific Reports. 2016;6. doi:10.1038/srep33754
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2016 | Journal Article | IST-REx-ID: 1251   OA
Zhu J, Bailly A, Zwiewka M, et al. TWISTED DWARF1 mediates the action of auxin transport inhibitors on actin cytoskeleton dynamics. Plant Cell. 2016;28(4):930-948. doi:10.1105/tpc.15.00726
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2016 | Journal Article | IST-REx-ID: 1345   OA
Molnar G, Fendrych M, Friml J. Plasma membrane: Negative attraction. Nature Plants. 2016;2. doi:10.1038/nplants.2016.102
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2016 | Journal Article | IST-REx-ID: 1410   OA
Ugalde J, Rodríguez Furlán C, De Rycke R, et al. Phosphatidylinositol 4-phosphate 5-kinases 1 and 2 are involved in the regulation of vacuole morphology during Arabidopsis thaliana pollen development. Plant Science. 2016;250:10-19. doi:10.1016/j.plantsci.2016.05.014
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2016 | Journal Article | IST-REx-ID: 1484   OA
Chen X, Wu S, Liu Z, Friml J. Environmental and endogenous control of cortical microtubule orientation. Trends in Cell Biology. 2016;26(6):409-419. doi:10.1016/j.tcb.2016.02.003
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