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254 Publications

2019 | Journal Article | IST-REx-ID: 7182 | OA
Systematic Y2H screening reveals extensive effector-complex formation
A. Alcântara, J. Bosch, F. Nazari, G. Hoffmann, M.C. Gallei, S. Uhse, M.A. Darino, T. Olukayode, D. Reumann, L. Baggaley, A. Djamei, Frontiers in Plant Science 10 (2019).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2019 | Journal Article | IST-REx-ID: 6377
Disruption of endocytosis through chemical inhibition of clathrin heavy chain function
Dejonghe W, Sharma I, Denoo B, De Munck S, Lu Q, Mishev K, Bulut H, Mylle E, De Rycke R, Vasileva MK, Savatin DV, Nerinckx W, Staes A, Drozdzecki A, Audenaert D, Yperman K, Madder A, Friml J, Van Damme D, Gevaert K, Haucke V, Savvides SN, Winne J, Russinova E. 2019. Disruption of endocytosis through chemical inhibition of clathrin heavy chain function. Nature Chemical Biology. 15(6), 641–649.
View | Files available | DOI | WoS
 
2019 | Thesis | IST-REx-ID: 7172 | OA
Molecular mechanisms of endomembrane trafficking in Arabidopsis thaliana
M.K. Vasileva, Molecular Mechanisms of Endomembrane Trafficking in Arabidopsis Thaliana, Institute of Science and Technology Austria, 2019.
[Published Version] View | Files available | DOI
 
2019 | Journal Article | IST-REx-ID: 6999 | OA
Salicylic acid-mediated plasmodesmal closure via Remorin-dependent lipid organization
D. Huang, Y. Sun, Z. Ma, M. Ke, Y. Cui, Z. Chen, C. Chen, C. Ji, T. Tran, L. Yang, S. Lam, Y. Han, G. Shu, J. Friml, Y. Miao, L. Jiang, X. Chen, Proceedings of the National Academy of Sciences of the United States of America 116 (2019) 21274–21284.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2019 | Thesis | IST-REx-ID: 6269 | OA
Clathrin-Mediated endocytosis, post-endocytic trafficking and their regulatory controls in plants
M. Narasimhan, Clathrin-Mediated Endocytosis, Post-Endocytic Trafficking and Their Regulatory Controls in Plants , Institute of Science and Technology Austria, 2019.
[Published Version] View | Files available | DOI
 
2019 | Journal Article | IST-REx-ID: 6351 | OA
Re-activation of stem cell pathways for pattern restoration in plant wound healing
P. Marhavá, L. Hörmayer, S. Yoshida, P. Marhavý, E. Benková, J. Friml, Cell 177 (2019) 957–969.e13.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2019 | Journal Article | IST-REx-ID: 6943 | OA
Targeted cell ablation-based insights into wound healing and restorative patterning
L. Hörmayer, J. Friml, Current Opinion in Plant Biology 52 (2019) 124–130.
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2019 | Journal Article | IST-REx-ID: 6260 | OA
Pinstatic acid promotes auxin transport by inhibiting PIN internalization
A. Oochi, J. Hajny, K. Fukui, Y. Nakao, M.C. Gallei, M. Quareshy, K. Takahashi, T. Kinoshita, S. Harborough, S. Kepinski, H. Kasahara, R. Napier, J. Friml, K. Hayashi, Plant Physiology 180 (2019) 1152–1165.
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2019 | Journal Article | IST-REx-ID: 6627 | OA [Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2018 | Book Chapter | IST-REx-ID: 408
In vitro assay for induction of adventitious rooting on intact arabidopsis hypocotyls
H. Trinh, I. Verstraeten, D. Geelen, in:, Root Development , Springer Nature, 2018, pp. 95–102.
View | DOI | PubMed | Europe PMC
 
2018 | Book Chapter | IST-REx-ID: 411
Optimized whole mount in situ immunolocalization for Arabidopsis thaliana root meristems and lateral root primordia
M. Karampelias, R. Tejos, J. Friml, S. Vanneste, in:, D. Ristova, E. Barbez (Eds.), Root Development. Methods and Protocols, Springer, 2018, pp. 131–143.
View | DOI
 
2018 | Journal Article | IST-REx-ID: 203 | OA
Auxin methylation is required for differential growth in Arabidopsis
M. Abbas, G.J. Hernández, S. Pollmann, S.L. Samodelov, M. Kolb, J. Friml, U.Z. Hammes, M.D. Zurbriggen, M. Blázquez, D. Alabadí, PNAS 115 (2018) 6864–6869.
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2018 | Journal Article | IST-REx-ID: 5830 | OA
CLE9 peptide-induced stomatal closure is mediated by abscisic acid, hydrogen peroxide, and nitric oxide in arabidopsis thaliana
Zhang L, Shi X, Zhang Y, Wang J, Yang J, Ishida T, Jiang W, Han X, Kang J, Wang X, Pan L, Lv S, Cao B, Zhang Y, Wu J, Han H, Hu Z, Cui L, Sawa S, He J, Wang G. 2018. CLE9 peptide-induced stomatal closure is mediated by abscisic acid, hydrogen peroxide, and nitric oxide in arabidopsis thaliana. Plant Cell and Environment.
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2018 | Journal Article | IST-REx-ID: 428 | OA
Gibberellin DELLA signaling targets the retromer complex to redirect protein trafficking to the plasma membrane
Y. Salanenka, I. Verstraeten, C. Löfke, K. Tabata, S. Naramoto, M. Glanc, J. Friml, PNAS 115 (2018) 3716–3721.
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 280
KIRA1 and ORESARA1 terminate flower receptivity by promoting cell death in the stigma of Arabidopsis
Z. Gao, A. Daneva, Y. Salanenka, M. Van Durme, M. Huysmans, Z. Lin, F. De Winter, S. Vanneste, M. Karimi, J. Van De Velde, K. Vandepoele, D. Van De Walle, K. Dewettinck, B. Lambrecht, M. Nowack, Nature Plants 4 (2018) 365–375.
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2018 | Journal Article | IST-REx-ID: 158 | OA
Maternal auxin supply contributes to early embryo patterning in Arabidopsis
H. Robert, C. Park, C. Gutièrrez, B. Wójcikowska, A. Pěnčík, O. Novák, J. Chen, W. Grunewald, T. Dresselhaus, J. Friml, T. Laux, Nature Plants 4 (2018) 548–553.
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2018 | Journal Article | IST-REx-ID: 462 | OA
NHX antiporters regulate the pH of endoplasmic reticulum and auxin-mediated development
L. Fan, L. Zhao, W. Hu, W. Li, O. Novák, M. Strnad, S. Simon, J. Friml, J. Shen, L. Jiang, Q. Qiu, Plant, Cell and Environment 41 (2018) 850–864.
[Submitted Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2018 | Journal Article | IST-REx-ID: 192 | OA
Rapid and reversible root growth inhibition by TIR1 auxin signalling
M. Fendrych, M. Akhmanova, J. Merrin, M. Glanc, S. Hagihara, K. Takahashi, N. Uchida, K.U. Torii, J. Friml, Nature Plants 4 (2018) 453–459.
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2018 | Journal Article | IST-REx-ID: 14 | OA
Relative contribution of PIN-containing secretory vesicles and plasma membrane PINs to the directed auxin transport: Theoretical estimation
S. Hille, M. Akhmanova, M. Glanc, A.J. Johnson, J. Friml, International Journal of Molecular Sciences 19 (2018).
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 36 | OA
Temperature-induced changes in the wheat phosphoproteome reveal temperature-regulated interconversion of phosphoforms
L. Vu, T. Zhu, I. Verstraeten, B. Van De Cotte, K. Gevaert, I. De Smet, Journal of Experimental Botany 69 (2018) 4609–4624.
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 148 | OA
The Chara genome: Secondary complexity and implications for plant terrestrialization
Nishiyama T, Sakayama H, De Vries J, Buschmann H, Saint Marcoux D, Ullrich K, Haas F, Vanderstraeten L, Becker D, Lang D, Vosolsobě S, Rombauts S, Wilhelmsson P, Janitza P, Kern R, Heyl A, Rümpler F, Calderón Villalobos L, Clay J, Skokan R, Toyoda A, Suzuki Y, Kagoshima H, Schijlen E, Tajeshwar N, Catarino B, Hetherington A, Saltykova A, Bonnot C, Breuninger H, Symeonidi A, Radhakrishnan G, Van Nieuwerburgh F, Deforce D, Chang C, Karol K, Hedrich R, Ulvskov P, Glöckner G, Delwiche C, Petrášek J, Van De Peer Y, Friml J, Beilby M, Dolan L, Kohara Y, Sugano S, Fujiyama A, Delaux PM, Quint M, Theissen G, Hagemann M, Harholt J, Dunand C, Zachgo S, Langdale J, Maumus F, Van Der Straeten D, Gould SB, Rensing S. 2018. The Chara genome: Secondary complexity and implications for plant terrestrialization. Cell. 174(2), 448–464.e24.
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2018 | Journal Article | IST-REx-ID: 147 | OA
The inhibitor Endosidin 4 targets SEC7 domain-type ARF GTPase exchange factors and interferes with sub cellular trafficking in eukaryotes
U. Kania, T. Nodzyński, Q. Lu, G.R. Hicks, W. Nerinckx, K. Mishev, F. Peurois, J. Cherfils, R.R.M. De, P. Grones, S. Robert, E. Russinova, J. Friml, The Plant Cell 30 (2018) 2553–2572.
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2018 | Journal Article | IST-REx-ID: 146 | OA
The dynamics of root cap sloughing in Arabidopsis is regulated by peptide signalling
C.L. Shi, D. von Wangenheim, U. Herrmann, M. Wildhagen, I. Kulik, A. Kopf, T. Ishida, V. Olsson, M.K. Anker, M. Albert, M.A. Butenko, G. Felix, S. Sawa, M. Claassen, J. Friml, R.B. Aalen, Nature Plants 4 (2018) 596–604.
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2018 | Journal Article | IST-REx-ID: 10881
Molecular evolution and diversification of the SMXL gene family
T.R. Moturu, S. Thula, R.K. Singh, T. Nodzyński, R.S. Vařeková, J. Friml, S. Simon, Journal of Experimental Botany 69 (2018) 2367–2378.
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2018 | Journal Article | IST-REx-ID: 913 | OA
PATELLINS are regulators of auxin mediated PIN1 relocation and plant development in Arabidopsis thaliana
R. Tejos, C. Rodríguez Furlán, M. Adamowski, M. Sauer, L. Norambuena, J. Friml, Journal of Cell Science 131 (2018).
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 5673 | OA
Mechanistic framework for cell-intrinsic re-establishment of PIN2 polarity after cell division
M. Glanc, M. Fendrych, J. Friml, Nature Plants 4 (2018) 1082–1088.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 
2018 | Journal Article | IST-REx-ID: 412 | OA
A functional study of AUXILIN LIKE1 and 2 two putative clathrin uncoating factors in Arabidopsis
M. Adamowski, M. Narasimhan, U. Kania, M. Glanc, G. De Jaeger, J. Friml, The Plant Cell 30 (2018) 700–716.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2018 | Journal Article | IST-REx-ID: 449 | OA
WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity
T. Prat, J. Hajny, W. Grunewald, M.K. Vasileva, G. Molnar, R. Tejos, M. Schmid, M. Sauer, J. Friml, PLoS Genetics 14 (2018).
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 191 | OA
PID/WAG-mediated phosphorylation of the Arabidopsis PIN3 auxin transporter mediates polarity switches during gravitropism
P. Grones, M.F. Abas, J. Hajny, A. Jones, S. Waidmann, J. Kleine Vehn, J. Friml, Scientific Reports 8 (2018).
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 442 | OA [Published Version] View | Files available | DOI
 
2017 | Journal Article | IST-REx-ID: 572 | OA
Control of endogenous auxin levels in plant root development
D. Olatunji, D. Geelen, I. Verstraeten, International Journal of Molecular Sciences 18 (2017).
[Published Version] View | Files available | DOI
 
2017 | Journal Article | IST-REx-ID: 657 | OA
Auxin response cell autonomously controls ground tissue initiation in the early arabidopsis embryo
B. Möller, C. Ten Hove, D. Xiang, N. Williams, L. López, S. Yoshida, M. Smit, R. Datla, D. Weijers, PNAS 114 (2017) E2533–E2539.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2017 | Journal Article | IST-REx-ID: 669 | OA
EXO70C2 is a key regulatory factor for optimal tip growth of pollen
L. Synek, N. Vukašinović, I. Kulich, M. Hála, K. Aldorfová, M. Fendrych, V. Žárský, Plant Physiology 174 (2017) 223–240.
[Submitted Version] View | Files available | DOI | PubMed | Europe PMC
 
2017 | Journal Article | IST-REx-ID: 722 | OA
Shaping 3D root system architecture
E. Morris, M. Griffiths, A. Golebiowska, S. Mairhofer, J. Burr Hersey, T. Goh, D. von Wangenheim, B. Atkinson, C. Sturrock, J. Lynch, K. Vissenberg, K. Ritz, D. Wells, S. Mooney, M. Bennett, Current Biology 27 (2017) R919–R930.
[Submitted Version] View | Files available | DOI | PubMed | Europe PMC
 
2017 | Thesis | IST-REx-ID: 938 | OA
Investigations into cell polarity and trafficking in the plant model Arabidopsis thaliana
M. Adamowski, Investigations into Cell Polarity and Trafficking in the Plant Model Arabidopsis Thaliana , Institute of Science and Technology Austria, 2017.
[Published Version] View | Files available | DOI
 
2017 | Thesis | IST-REx-ID: 1127 | OA
Identification of novel regulators of PIN polarity and development of novel auxin sensor
T. Prat, Identification of Novel Regulators of PIN Polarity and Development of Novel Auxin Sensor, Institute of Science and Technology Austria, 2017.
[Published Version] View | Files available
 
2017 | Journal Article | IST-REx-ID: 1159 | OA
Cis-cinnamic acid is a novel natural auxin efflux inhibitor that promotes lateral root formation
W. Steenackers, P. Klíma, M. Quareshy, I. Cesarino, R. Kumpf, S. Corneillie, P. Araújo, T. Viaene, G. Goeminne, M. Nowack, K. Ljung, J. Friml, J. Blakeslee, O. Novák, E. Zažímalová, R. Napier, W. Boerjan, B. Vanholme, Plant Physiology 173 (2017) 552–565.
[Submitted Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2017 | Journal Article | IST-REx-ID: 1110 | OA
Flavonol-induced changes in PIN2 polarity and auxin transport in the Arabidopsis thaliana rol1-2 mutant require phosphatase activity
B. Kuhn, T. Nodzyński, S. Errafi, R. Bucher, S. Gupta, B. Aryal, P. Dobrev, L. Bigler, M. Geisler, E. Zažímalová, J. Friml, C. Ringli, Scientific Reports 7 (2017).
[Published Version] View | Files available | DOI | WoS
 
2017 | Journal Article | IST-REx-ID: 799 | OA
BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive trafficking at the trans-Golgi network/early endosome in Arabidopsis thaliana
S. Kitakura, M. Adamowski, Y. Matsuura, L. Santuari, H. Kouno, K. Arima, C. Hardtke, J. Friml, T. Kakimoto, H. Tanaka, Plant and Cell Physiology 58 (2017).
[Submitted Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2017 | Book Chapter | IST-REx-ID: 545 | OA
Vascular tissue development and regeneration in the model plant arabidopsis
E. Mazur, J. Friml, in:, S. Jurić (Ed.), Plant Engineering, InTech, 2017, pp. 113–140.
[Published Version] View | Files available | DOI
 
2017 | Journal Article | IST-REx-ID: 946 | OA
Live tracking of moving samples in confocal microscopy for vertically grown roots
D. von Wangenheim, R. Hauschild, M. Fendrych, V. Barone, E. Benková, J. Friml, ELife 6 (2017).
[Published Version] View | Files available | DOI | WoS
 
2017 | Journal Article | IST-REx-ID: 1078 | OA
Light sheet fluorescence microscopy of plant roots growing on the surface of a gel
D. von Wangenheim, R. Hauschild, J. Friml, Journal of Visualized Experiments JoVE 2017 (2017).
[Published Version] View | Files available | DOI | WoS
 
2016 | Journal Article | IST-REx-ID: 1081 | OA
Cellular mechanisms for cargo delivery and polarity maintenance at different polar domains in plant cells
Ł. Łangowski, K.T. Wabnik, H. Li, S. Vanneste, S. Naramoto, H. Tanaka, J. Friml, Cell Discovery 2 (2016).
[Published Version] View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1145 | OA
Enquiry into the topology of plasma membrane localized PIN auxin transport components
T. Nodzyński, S. Vanneste, M. Zwiewka, M. Pernisová, J. Hejátko, J. Friml, Molecular Plant 9 (2016) 1504–1519.
[Published Version] View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1147 | OA
Auxin flow mediated competition between axillary buds to restore apical dominance
J. Balla, Z. Medved’Ová, P. Kalousek, N. Matiješčuková, J. Friml, V. Reinöhl, S. Procházka, Scientific Reports 6 (2016).
[Published Version] View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1151 | OA
A noncanonical auxin sensing mechanism is required for organ morphogenesis in arabidopsis
S. Simonini, J. Deb, L. Moubayidin, P. Stephenson, M. Valluru, A. Freire Rios, K. Sorefan, D. Weijers, J. Friml, L. Östergaard, Genes and Development 30 (2016) 2286–2296.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
2016 | Journal Article | IST-REx-ID: 1153 | OA
A model of differential growth guided apical hook formation in plants
P. Žádníková, K.T. Wabnik, A. Abuzeineh, M. Gallemí, D. Van Der Straeten, R. Smith, D. Inze, J. Friml, P. Prusinkiewicz, E. Benková, Plant Cell 28 (2016) 2464–2477.
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2016 | Journal Article | IST-REx-ID: 1212 | OA
Termination of shoot gravitropic responses by auxin feedback on PIN3 polarity
H. Rakusová, M. Abbas, H. Han, S. Song, H. Robert, J. Friml, Current Biology 26 (2016) 3026–3032.
[Submitted Version] View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1221 | OA [Published Version] View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1238 | OA
Endosomal interactions during root hair growth
D. von Wangenheim, A. Rosero, G. Komis, O. Šamajová, M. Ovečka, B. Voigt, J. Šamaj, Frontiers in Plant Science 6 (2016).
[Published Version] View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1247 | OA
ROTUNDA3 function in plant development by phosphatase 2A-mediated regulation of auxin transporter recycling
M. Karampelias, P. Neyt, S. De Groeve, S. Aesaert, G. Coussens, J. Rolčík, L. Bruno, N. De Winne, A. Van Minnebruggen, M. Van Montagu, M. Ponce, J. Micol, J. Friml, G. De Jaeger, M. Van Lijsebettens, PNAS 113 (2016) 2768–2773.
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2016 | Journal Article | IST-REx-ID: 1251 | OA
TWISTED DWARF1 mediates the action of auxin transport inhibitors on actin cytoskeleton dynamics
Zhu J, Bailly A, Zwiewka M, Sovero V, Di Donato M, Ge P, Oehri J, Aryal B, Hao P, Linnert M, Burgardt N, Lücke C, Weiwad M, Michel M, Weiergräber O, Pollmann S, Azzarello E, Mancuso S, Ferro N, Fukao Y, Hoffmann C, Wedlich Söldner R, Friml J, Thomas C, Geisler M. 2016. TWISTED DWARF1 mediates the action of auxin transport inhibitors on actin cytoskeleton dynamics. Plant Cell. 28(4), 930–948.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
2016 | Journal Article | IST-REx-ID: 1264 | OA
Sorting motifs involved in the trafficking and localization of the PIN1 auxin efflux carrier
G. Sancho Andrés, E. Soriano Ortega, C. Gao, J. Bernabé Orts, M. Narasimhan, A. Müller, R. Tejos, L. Jiang, J. Friml, F. Aniento, M. Marcote, Plant Physiology 171 (2016) 1965–1982.
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2016 | Journal Article | IST-REx-ID: 1277 | OA
Danger-associated peptide signaling in Arabidopsis requires clathrin
F. Ortiz Morea, D. Savatin, W. Dejonghe, R. Kumar, Y. Luo, M. Adamowski, J. Van Begin, K. Dressano, G. De Oliveira, X. Zhao, Q. Lu, A. Madder, J. Friml, D. De Moura, E. Russinova, PNAS 113 (2016) 11028–11033.
[Preprint] View | DOI | Download Preprint (ext.)
 
2016 | Journal Article | IST-REx-ID: 1344 | OA [Published Version] View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1345 | OA
Plasma membrane: Negative attraction
G. Molnar, M. Fendrych, J. Friml, Nature Plants 2 (2016).
[Published Version] View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1372 | OA
Cytokinins influence root gravitropism via differential regulation of auxin transporter expression and localization in Arabidopsis
M. Pernisová, T. Prat, P. Grones, D. Haruštiaková, M. Matonohova, L. Spíchal, T. Nodzyński, J. Friml, J. Hejátko, New Phytologist 212 (2016) 497–509.
[Submitted Version] View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1410 | OA
Phosphatidylinositol 4-phosphate 5-kinases 1 and 2 are involved in the regulation of vacuole morphology during Arabidopsis thaliana pollen development
J. Ugalde, C. Rodríguez Furlán, R. De Rycke, L. Norambuena, J. Friml, G. León, R. Tejos, Plant Science 250 (2016) 10–19.
[Submitted Version] View | Files available | DOI | PubMed | Europe PMC
 
2016 | Journal Article | IST-REx-ID: 1417 | OA
PIN6 auxin transporter at endoplasmic reticulum and plasma membrane mediates auxin homeostasis and organogenesis in Arabidopsis
S. Simon, P. Skůpa, T. Viaene, M. Zwiewka, R. Tejos, P. Klíma, M. Čarná, J. Rolčík, R. De Rycke, I. Moreno, P. Dobrev, A. Orellana, E. Zažímalová, J. Friml, New Phytologist 211 (2016) 65–74.
[Submitted Version] View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1482 | OA [Published Version] View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1484 | OA
Environmental and endogenous control of cortical microtubule orientation
X. Chen, S. Wu, Z. Liu, J. Friml, Trends in Cell Biology 26 (2016) 409–419.
[Submitted Version] View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1641 | OA
A forward genetic screen for new regulators of auxin mediated degradation of auxin transport proteins in Arabidopsis thaliana
R. Zemová, M. Zwiewka, A. Bielach, H. Robert, J. Friml, Journal of Plant Growth Regulation 35 (2016) 465–476.
[Preprint] View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1346 | OA
Mitochondrial uncouplers inhibit clathrin-mediated endocytosis largely through cytoplasmic acidification
Dejonghe W, Kuenen S, Mylle E, Vasileva MK, Keech O, Viotti C, Swerts J, Fendrych M, Ortiz Morea F, Mishev K, Delang S, Scholl S, Zarza X, Heilmann M, Kourelis J, Kasprowicz J, Nguyen L, Drozdzecki A, Van Houtte I, Szatmári A, Majda M, Baisa G, Bednarek S, Robert S, Audenaert D, Testerink C, Munnik T, Van Damme D, Heilmann I, Schumacher K, Winne J, Friml J, Verstreken P, Russinova E. 2016. Mitochondrial uncouplers inhibit clathrin-mediated endocytosis largely through cytoplasmic acidification. Nature Communications. 7, 11710.
[Published Version] View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 510 | OA
The CLE gene family in Populus trichocarpa
Z. Liu, N. Yang, Y. Lv, L. Pan, S. Lv, H. Han, G. Wang, Plant Signaling & Behavior 11 (2016).
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
2016 | Journal Article | IST-REx-ID: 1274 | OA
Vascular cambium regeneration and vessel formation in wounded inflorescence stems of Arabidopsis
E. Mazur, E. Benková, J. Friml, Scientific Reports 6 (2016).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
2015 | Journal Article | IST-REx-ID: 1383 | OA
V-ATPase activity in the TGN/EE is required for exocytosis and recycling in Arabidopsis
L. Yu, S. Scholl, A. Doering, Z. Yi, N. Irani, S. Di Rubbo, L. Neumetzler, P. Krishnamoorthy, I. Van Houtte, E. Mylle, V. Bischoff, S. Vernhettes, J. Winne, J. Friml, Y. Stierhof, K. Schumacher, S. Persson, E. Russinova, Nature Plants 1 (2015).
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2015 | Journal Article | IST-REx-ID: 1532
Auxin-modulated root growth inhibition in Arabidopsis thaliana seedlings with ammonium as the sole nitrogen source
H. Yang, J. Von Der Fecht Bartenbach, J. Friml, J. Lohmann, B. Neuhäuser, U. Ludewig, Functional Plant Biology 42 (2015) 239–251.
View | DOI | PubMed | Europe PMC
 
2015 | Journal Article | IST-REx-ID: 1534 | OA
Transcriptional regulation of PIN genes by FOUR LIPS and MYB88 during Arabidopsis root gravitropism
H. Wang, K. Yang, J. Zou, L. Zhu, Z. Xie, M. Morita, M. Tasaka, J. Friml, E. Grotewold, T. Beeckman, S. Vanneste, F. Sack, J. Le, Nature Communications 6 (2015).
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2015 | Journal Article | IST-REx-ID: 1536
Asymmetric localizations of the ABC transporter PaPDR1 trace paths of directional strigolactone transport
J. Sasse, S. Simon, C. Gübeli, G. Liu, X. Cheng, J. Friml, H. Bouwmeester, E. Martinoia, L. Borghi, Current Biology 25 (2015) 647–655.
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2015 | Journal Article | IST-REx-ID: 1543
A conserved core of programmed cell death indicator genes discriminates developmentally and environmentally induced programmed cell death in plants
Y. Olvera Carrillo, M. Van Bel, T. Van Hautegem, M. Fendrych, M. Huysmans, M. Šimášková, M. Van Durme, P. Buscaill, S. Rivas, N. Coll, F. Coppens, S. Maere, M. Nowack, Plant Physiology 169 (2015) 2684–2699.
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2015 | Journal Article | IST-REx-ID: 1556 | OA
The Arabidopsis thaliana elongator complex subunit 2 epigenetically affects root development
Y. Jia, H. Tian, H. Li, Q. Yu, L. Wang, J. Friml, Z. Ding, Journal of Experimental Botany 66 (2015) 4631–4642.
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2015 | Journal Article | IST-REx-ID: 1558
The cyclophilin a DIAGEOTROPICA gene affects auxin transport in both root and shoot to control lateral root formation
M. Ivanchenko, J. Zhu, B. Wang, E. Medvecka, Y. Du, E. Azzarello, S. Mancuso, M. Megraw, S. Filichkin, J. Dubrovsky, J. Friml, M. Geisler, Development 142 (2015) 712–721.
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2015 | Journal Article | IST-REx-ID: 1554 | OA
Reporters for sensitive and quantitative measurement of auxin response
C. Liao, W. Smet, G. Brunoud, S. Yoshida, T. Vernoux, D. Weijers, Nature Methods 12 (2015) 207–210.
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2015 | Journal Article | IST-REx-ID: 1562
Auxin-binding pocket of ABP1 is crucial for its gain-of-function cellular and developmental roles
P. Grones, X. Chen, S. Simon, W. Kaufmann, R. De Rycke, T. Nodzyński, E. Zažímalová, J. Friml, Journal of Experimental Botany 66 (2015) 5055–5065.
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2015 | Journal Article | IST-REx-ID: 1574 | OA
A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development
Chen Q, Liu Y, Maere S, Lee E, Van Isterdael G, Xie Z, Xuan W, Lucas J, Vassileva V, Kitakura S, Marhavý P, Wabnik KT, Geldner N, Benková E, Le J, Fukaki H, Grotewold E, Li C, Friml J, Sack F, Beeckman T, Vanneste S. 2015. A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development. Nature Communications. 6, 8821.
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2015 | Journal Article | IST-REx-ID: 1569 | OA
An early secretory pathway mediated by gnom-like 1 and gnom is essential for basal polarity establishment in Arabidopsis thaliana
S. Doyle, A. Haegera, T. Vain, A. Rigala, C. Viotti, M. Łangowskaa, Q. Maa, J. Friml, N. Raikhel, G. Hickse, S. Robert, PNAS 112 (2015) E806–E815.
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2015 | Journal Article | IST-REx-ID: 1640 | OA
Cytokinin response factors regulate PIN-FORMED auxin transporters
M. Šimášková, J. O’Brien, M. Khan-Djamei, G. Van Noorden, K. Ötvös, A. Vieten, I. De Clercq, J. Van Haperen, C. Cuesta, K. Hoyerová, S. Vanneste, P. Marhavý, K.T. Wabnik, F. Van Breusegem, M. Nowack, A. Murphy, J. Friml, D. Weijers, T. Beeckman, E. Benková, Nature Communications 6 (2015).
[Submitted Version] View | Files available | DOI
 
2015 | Journal Article | IST-REx-ID: 1819
Osmotic stress modulates the balance between exocytosis and clathrin mediated endocytosis in Arabidopsis thaliana
M. Zwiewka, T. Nodzyński, S. Robert, S. Vanneste, J. Friml, Molecular Plant 8 (2015) 1175–1187.
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2015 | Journal Article | IST-REx-ID: 1849
Calcium is an organizer of cell polarity in plants
E. Himschoot, T. Beeckman, J. Friml, S. Vanneste, Biochimica et Biophysica Acta - Molecular Cell Research 1853 (2015) 2168–2172.
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2015 | Journal Article | IST-REx-ID: 1847
ABP1: Finally docking
P. Grones, J. Friml, Molecular Plant 8 (2015) 356–358.
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2015 | Journal Article | IST-REx-ID: 1865
Plant embryogenesis requires AUX/LAX-mediated auxin influx
H. Robert, W. Grunewald, M. Sauer, B. Cannoot, M. Soriano, R. Swarup, D. Weijers, M. Bennett, K. Boutilier, J. Friml, Development 142 (2015) 702–711.
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2015 | Journal Article | IST-REx-ID: 1871 | OA
Auxin transporters and binding proteins at a glance
P. Grones, J. Friml, Journal of Cell Science 128 (2015) 1–7.
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2015 | Journal Article | IST-REx-ID: 1879 | OA
Developing 3D SEM in a broad biological context
Kremer A, Lippens S, Bartunkova S, Asselbergh B, Blanpain C, Fendrych M, Goossens A, Holt M, Janssens S, Krols M, Larsimont J, Mc Guire C, Nowack M, Saelens X, Schertel A, Schepens B, Slezak M, Timmerman V, Theunis C, Van Brempt R, Visser Y, Guérin C. 2015. Developing 3D SEM in a broad biological context. Journal of Microscopy. 259(2), 80–96.
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2015 | Journal Article | IST-REx-ID: 1878 View | DOI
 
2015 | Journal Article | IST-REx-ID: 1944
Intracellular trafficking and PIN-mediated cell polarity during tropic responses in plants
H. Rakusová, M. Fendrych, J. Friml, Current Opinion in Plant Biology 23 (2015) 116–123.
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2015 | Journal Article | IST-REx-ID: 532
EIN2-directed translational regulation of ethylene signaling in arabidopsis
W. Li, M. Ma, Y. Feng, H. Li, Y. Wang, Y. Ma, M. Li, F. An, H. Guo, Cell 163 (2015) 670–683.
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2015 | Journal Article | IST-REx-ID: 1591 | OA
PIN-dependent auxin transport: Action, regulation, and evolution
M. Adamowski, J. Friml, Plant Cell 27 (2015) 20–32.
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2015 | Journal Article | IST-REx-ID: 1509 | OA
Embryo-lethal phenotypes in early abp1 mutants are due to disruption of the neighboring BSM gene
J. Michalko, M. Lukacisinova, M.T. Bollenbach, J. Friml, F1000 Research 4 (2015).
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2014 | Book Chapter | IST-REx-ID: 1806
Auxin on the road navigated by cellular PIN polarity
P. Baster, J. Friml, in:, E. Zažímalová, J. Petrášek, E. Benková (Eds.), Auxin and Its Role in Plant Development, Springer, 2014, pp. 143–170.
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2014 | Journal Article | IST-REx-ID: 1852 | OA
An auxin-mediated shift toward growth isotropy promotes organ formation at the shoot meristem in Arabidopsis
M. Sassi, O. Ali, F. Boudon, G. Cloarec, U. Abad, C. Cellier, X. Chen, B. Gilles, P. Milani, J. Friml, T. Vernoux, C. Godin, O. Hamant, J. Traas, Current Biology 24 (2014) 2335–2342.
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2014 | Journal Article | IST-REx-ID: 1862 | OA
Inhibition of cell expansion by rapid ABP1-mediated auxin effect on microtubules
X. Chen, L. Grandont, H. Li, R. Hauschild, S. Paque, A. Abuzeineh, H. Rakusova, E. Benková, C. Perrot Rechenmann, J. Friml, Nature 516 (2014) 90–93.
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2014 | Journal Article | IST-REx-ID: 1893 | OA
SAC phosphoinositide phosphatases at the tonoplast mediate vacuolar function in Arabidopsis
P. Marhavá, S. Hirsch, E. Feraru, R. Tejos, R. Van Wijk, T. Viaene, M. Heilmann, J. Lerche, R. De Rycke, M. Feraru, P. Grones, M. Van Montagu, I. Heilmann, T. Munnik, J. Friml, PNAS 111 (2014) 2818–2823.
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2014 | Journal Article | IST-REx-ID: 1897 | OA
Insights into the localization and function of the membrane trafficking regulator GNOM ARF-GEF at the Golgi apparatus in Arabidopsis
S. Naramoto, M. Otegui, N. Kutsuna, R. De Rycke, T. Dainobu, M. Karampelias, M. Fujimoto, E. Feraru, D. Miki, H. Fukuda, A. Nakano, J. Friml, Plant Cell 26 (2014) 3062–3076.
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2014 | Journal Article | IST-REx-ID: 1901
WOX5-IAA17 feedback circuit-mediated cellular auxin response is crucial for the patterning of root stem cell niches in arabidopsis
H. Tian, K.T. Wabnik, T. Niu, H. Li, Q. Yu, S. Pollmann, S. Vanneste, W. Govaerts, J. Rolčík, M. Geisler, J. Friml, Z. Ding, Molecular Plant 7 (2014) 277–289.
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2014 | Journal Article | IST-REx-ID: 1917 | OA
Cell surface ABP1-TMK auxin sensing complex activates ROP GTPase signaling
T. Xu, N. Dai, J. Chen, S. Nagawa, M. Cao, H. Li, Z. Zhou, X. Chen, R. De Rycke, H. Rakusová, W. Wang, A. Jones, J. Friml, S. Patterson, A. Bleecker, Z. Yang, Science 343 (2014) 1025–1028.
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2014 | Journal Article | IST-REx-ID: 1915
Rho-GTPase-regulated vesicle trafficking in plant cell polarity
X. Chen, J. Friml, Biochemical Society Transactions 42 (2014) 212–218.
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2014 | Journal Article | IST-REx-ID: 1914
Plant biology: Gatekeepers of the road to protein perdition
M. Sauer, J. Friml, Current Biology 24 (2014) R27–R29.
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2014 | Journal Article | IST-REx-ID: 1921 | OA
Bipolar plasma membrane distribution of phosphoinositides and their requirement for auxin-mediated cell polarity and patterning in Arabidopsis
R. Tejos, M. Sauer, S. Vanneste, M. Palacios-Gomez, H. Li, M. Heilmann, R. Van Wijk, J. Vermeer, I. Heilmann, T. Munnik, J. Friml, Plant Cell 26 (2014) 2114–2128.
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2014 | Journal Article | IST-REx-ID: 1924
Auxin transport and activity regulate stomatal patterning and development
J. Le, X. Liu, K. Yang, X. Chen, L. Zhu, H. Wang, M. Wang, S. Vanneste, M. Morita, M. Tasaka, Z. Ding, J. Friml, T. Beeckman, F. Sack, Nature Communications 5 (2014).
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2014 | Journal Article | IST-REx-ID: 1934
Cytokinin controls polarity of PIN1-dependent Auxin transport during lateral root organogenesis
P. Marhavý, J. Duclercq, B. Weller, E. Feraru, A. Bielach, R. Offringa, J. Friml, C. Schwechheimer, A. Murphy, E. Benková, Current Biology 24 (2014) 1031–1037.
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