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3881 Publications
2011 | Conference Paper | IST-REx-ID: 3325
Streaming transducers for algorithmic verification of single pass list processing programs
R. Alur, P. Cerny, in:, ACM, 2011, pp. 599–610.
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R. Alur, P. Cerny, in:, ACM, 2011, pp. 599–610.
2011 | Conference Paper | IST-REx-ID: 3326 |

What’s decidable about weighted automata
S. Almagor, U. Boker, O. Kupferman, in:, Springer, 2011, pp. 482–491.
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S. Almagor, U. Boker, O. Kupferman, in:, Springer, 2011, pp. 482–491.
2011 | Conference Paper | IST-REx-ID: 3328 |

A generic algebraic kernel for non linear geometric applications
E. Berberich, M. Hemmer, M. Kerber, in:, ACM, 2011, pp. 179–186.
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E. Berberich, M. Hemmer, M. Kerber, in:, ACM, 2011, pp. 179–186.
2011 | Conference Paper | IST-REx-ID: 3329 |

Deconstructing approximate offsets
E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, in:, Proceedings of the Twenty-Seventh Annual Symposium on Computational Geometry, ACM, 2011, pp. 187–196.
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E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, in:, Proceedings of the Twenty-Seventh Annual Symposium on Computational Geometry, ACM, 2011, pp. 187–196.
2011 | Conference Paper | IST-REx-ID: 3330 |

Root refinement for real polynomials
M. Kerber, M. Sagraloff, in:, Springer, 2011, pp. 209–216.
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M. Kerber, M. Sagraloff, in:, Springer, 2011, pp. 209–216.
2011 | Journal Article | IST-REx-ID: 3332 |

A note on the complexity of real algebraic hypersurfaces
M. Kerber, M. Sagraloff, Graphs and Combinatorics 27 (2011) 419–430.
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M. Kerber, M. Sagraloff, Graphs and Combinatorics 27 (2011) 419–430.
2011 | Journal Article | IST-REx-ID: 3334
Letter from the new editors-in-chief
H. Edelsbrunner, J. Pach, G. Ziegler, Discrete & Computational Geometry 45 (2011) 1–2.
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H. Edelsbrunner, J. Pach, G. Ziegler, Discrete & Computational Geometry 45 (2011) 1–2.
2011 | Book Chapter | IST-REx-ID: 3335 |

Alpha, Betti and the Megaparsec Universe: On the topology of the Cosmic Web
R. Van De Weygaert, G. Vegter, H. Edelsbrunner, B. Jones, P. Pranav, C. Park, W. Hellwing, B. Eldering, N. Kruithof, P. Bos, J. Hidding, J. Feldbrugge, E. Ten Have, M. Van Engelen, M. Caroli, M. Teillaud, in:, M. Gavrilova, K. Tan, M. Mostafavi (Eds.), Transactions on Computational Science XIV, Springer, 2011, pp. 60–101.
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R. Van De Weygaert, G. Vegter, H. Edelsbrunner, B. Jones, P. Pranav, C. Park, W. Hellwing, B. Eldering, N. Kruithof, P. Bos, J. Hidding, J. Feldbrugge, E. Ten Have, M. Van Engelen, M. Caroli, M. Teillaud, in:, M. Gavrilova, K. Tan, M. Mostafavi (Eds.), Transactions on Computational Science XIV, Springer, 2011, pp. 60–101.
2011 | Conference Paper | IST-REx-ID: 3337
Learning anticipation policies for robot table tennis
Z. Wang, C. Lampert, K. Mülling, B. Schölkopf, J. Peters, in:, IEEE, 2011, pp. 332–337.
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Z. Wang, C. Lampert, K. Mülling, B. Schölkopf, J. Peters, in:, IEEE, 2011, pp. 332–337.
2011 | Preprint | IST-REx-ID: 3338 |

Bounded rationality in concurrent parity games
K. Chatterjee, ArXiv (2011) 1–51.
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K. Chatterjee, ArXiv (2011) 1–51.
2011 | Preprint | IST-REx-ID: 3339 |

Magnifying lens abstraction for stochastic games with discounted and long-run average objectives
K. Chatterjee, L. De Alfaro, R. Pritam, ArXiv (2011).
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| arXiv
K. Chatterjee, L. De Alfaro, R. Pritam, ArXiv (2011).
2011 | Conference Paper | IST-REx-ID: 3342 |

Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives
K. Chatterjee, M. Henzinger, M. Joglekar, S. Nisarg, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 260–276.
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K. Chatterjee, M. Henzinger, M. Joglekar, S. Nisarg, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 260–276.
2011 | Conference Paper | IST-REx-ID: 3344
Graph games with reachability objectives
K. Chatterjee, in:, G. Delzanno, I. Potapov (Eds.), Springer, 2011, pp. 1–1.
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K. Chatterjee, in:, G. Delzanno, I. Potapov (Eds.), Springer, 2011, pp. 1–1.
2011 | Conference Paper | IST-REx-ID: 3345 |

Energy and mean-payoff parity Markov Decision Processes
K. Chatterjee, L. Doyen, in:, Springer, 2011, pp. 206–218.
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K. Chatterjee, L. Doyen, in:, Springer, 2011, pp. 206–218.
2011 | Conference Paper | IST-REx-ID: 3346 |

Two views on multiple mean payoff objectives in Markov Decision Processes
T. Brázdil, V. Brožek, K. Chatterjee, V. Forejt, A. Kučera, in:, IEEE, 2011.
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T. Brázdil, V. Brožek, K. Chatterjee, V. Forejt, A. Kučera, in:, IEEE, 2011.
2011 | Conference Paper | IST-REx-ID: 3347 |

Finitary languages
K. Chatterjee, N. Fijalkow, in:, Springer, 2011, pp. 216–226.
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K. Chatterjee, N. Fijalkow, in:, Springer, 2011, pp. 216–226.
2011 | Conference Paper | IST-REx-ID: 3348 |

Synthesis of memory efficient real time controllers for safety objectives
K. Chatterjee, V. Prabhu, in:, Springer, 2011, pp. 221–230.
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K. Chatterjee, V. Prabhu, in:, Springer, 2011, pp. 221–230.
2011 | Conference Paper | IST-REx-ID: 3349 |

A reduction from parity games to simple stochastic games
K. Chatterjee, N. Fijalkow, in:, EPTCS, 2011, pp. 74–86.
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K. Chatterjee, N. Fijalkow, in:, EPTCS, 2011, pp. 74–86.
2011 | Conference Paper | IST-REx-ID: 3350
Minimum attention controller synthesis for omega regular objectives
K. Chatterjee, R. Majumdar, in:, U. Fahrenberg, S. Tripakis (Eds.), Springer, 2011, pp. 145–159.
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K. Chatterjee, R. Majumdar, in:, U. Fahrenberg, S. Tripakis (Eds.), Springer, 2011, pp. 145–159.
2011 | Conference Paper | IST-REx-ID: 3351 |

On memoryless quantitative objectives
K. Chatterjee, L. Doyen, R. Singh, in:, O. Owe, M. Steffen, J.A. Telle (Eds.), Springer, 2011, pp. 148–159.
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K. Chatterjee, L. Doyen, R. Singh, in:, O. Owe, M. Steffen, J.A. Telle (Eds.), Springer, 2011, pp. 148–159.
2011 | Journal Article | IST-REx-ID: 3352
Biology as reactivity
J. Fisher, D. Harel, T.A. Henzinger, Communications of the ACM 54 (2011) 72–82.
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J. Fisher, D. Harel, T.A. Henzinger, Communications of the ACM 54 (2011) 72–82.
2011 | Journal Article | IST-REx-ID: 3353 |

A theory of synchronous relational interfaces
S. Tripakis, B. Lickly, T.A. Henzinger, E. Lee, ACM Transactions on Programming Languages and Systems (TOPLAS) 33 (2011).
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S. Tripakis, B. Lickly, T.A. Henzinger, E. Lee, ACM Transactions on Programming Languages and Systems (TOPLAS) 33 (2011).
2011 | Journal Article | IST-REx-ID: 3354
Qualitative concurrent parity games
K. Chatterjee, L. De Alfaro, T.A. Henzinger, ACM Transactions on Computational Logic (TOCL) 12 (2011).
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K. Chatterjee, L. De Alfaro, T.A. Henzinger, ACM Transactions on Computational Logic (TOCL) 12 (2011).
2011 | Conference Paper | IST-REx-ID: 3355 |

Quantitative evaluation of BFT protocols
R. Halalai, T.A. Henzinger, V. Singh, in:, IEEE, 2011, pp. 255–264.
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R. Halalai, T.A. Henzinger, V. Singh, in:, IEEE, 2011, pp. 255–264.
2011 | Conference Paper | IST-REx-ID: 3356 |

Temporal specifications with accumulative values
U. Boker, K. Chatterjee, T.A. Henzinger, O. Kupferman, in:, IEEE, 2011.
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U. Boker, K. Chatterjee, T.A. Henzinger, O. Kupferman, in:, IEEE, 2011.
2011 | Conference Paper | IST-REx-ID: 3357
The complexity of request-response games
K. Chatterjee, T.A. Henzinger, F. Horn, in:, A.-H. Dediu, S. Inenaga, C. Martín-Vide (Eds.), Springer, 2011, pp. 227–237.
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K. Chatterjee, T.A. Henzinger, F. Horn, in:, A.-H. Dediu, S. Inenaga, C. Martín-Vide (Eds.), Springer, 2011, pp. 227–237.
2011 | Conference Paper | IST-REx-ID: 3358 |

Scheduling large jobs by abstraction refinement
T.A. Henzinger, V. Singh, T. Wies, D. Zufferey, in:, ACM, 2011, pp. 329–342.
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T.A. Henzinger, V. Singh, T. Wies, D. Zufferey, in:, ACM, 2011, pp. 329–342.
2011 | Conference Paper | IST-REx-ID: 3359
From boolean to quantitative synthesis
P. Cerny, T.A. Henzinger, in:, ACM, 2011, pp. 149–154.
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P. Cerny, T.A. Henzinger, in:, ACM, 2011, pp. 149–154.
2011 | Conference Paper | IST-REx-ID: 3360 |

Determinizing discounted-sum automata
U. Boker, T.A. Henzinger, in:, Springer, 2011, pp. 82–96.
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U. Boker, T.A. Henzinger, in:, Springer, 2011, pp. 82–96.
2011 | Conference Paper | IST-REx-ID: 3361 |

The complexity of quantitative information flow problems
P. Cerny, K. Chatterjee, T.A. Henzinger, in:, IEEE, 2011, pp. 205–217.
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P. Cerny, K. Chatterjee, T.A. Henzinger, in:, IEEE, 2011, pp. 205–217.
2011 | Conference Paper | IST-REx-ID: 3362 |

Dynamic reactive modules
J. Fisher, T.A. Henzinger, D. Nickovic, N. Piterman, A. Singh, M. Vardi, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2011, pp. 404–418.
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J. Fisher, T.A. Henzinger, D. Nickovic, N. Piterman, A. Singh, M. Vardi, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2011, pp. 404–418.
2011 | Preprint | IST-REx-ID: 3363 |

The decidability frontier for probabilistic automata on infinite words
K. Chatterjee, T.A. Henzinger, M. Tracol, (n.d.).
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| arXiv
K. Chatterjee, T.A. Henzinger, M. Tracol, (n.d.).
2011 | Journal Article | IST-REx-ID: 3364 |

Approximation of event probabilities in noisy cellular processes
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, Theoretical Computer Science 412 (2011) 2128–2141.
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F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, Theoretical Computer Science 412 (2011) 2128–2141.
2011 | Conference Paper | IST-REx-ID: 3365 |

QUASY: quantitative synthesis tool
K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, in:, Springer, 2011, pp. 267–271.
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K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, in:, Springer, 2011, pp. 267–271.
2011 | Conference Paper | IST-REx-ID: 3366 |

Quantitative synthesis for concurrent programs
P. Cerny, K. Chatterjee, T.A. Henzinger, A. Radhakrishna, R. Singh, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 243–259.
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P. Cerny, K. Chatterjee, T.A. Henzinger, A. Radhakrishna, R. Singh, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 243–259.
2011 | Conference Paper | IST-REx-ID: 3367
An output sensitive algorithm for persistent homology
C. Chen, M. Kerber, in:, ACM, 2011, pp. 207–216.
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C. Chen, M. Kerber, in:, ACM, 2011, pp. 207–216.
2011 | Journal Article | IST-REx-ID: 3368 |

Enveloping cell layer differentiation at the surface of zebrafish germ layer tissue explants
G. Krens, S. Möllmert, C.-P.J. Heisenberg, PNAS 108 (2011) E9–E10.
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| PubMed | Europe PMC
G. Krens, S. Möllmert, C.-P.J. Heisenberg, PNAS 108 (2011) E9–E10.
2011 | Journal Article | IST-REx-ID: 3369
The multiple faces of RIM
A. Pernia-Andrade, P.M. Jonas, Neuron 69 (2011) 185–187.
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A. Pernia-Andrade, P.M. Jonas, Neuron 69 (2011) 185–187.
2011 | Journal Article | IST-REx-ID: 3370 |

Consequences of different null models on the tree shape bias of supertree methods
A. Kupczok, Systematic Biology 60 (2011) 218–225.
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A. Kupczok, Systematic Biology 60 (2011) 218–225.
2011 | Journal Article | IST-REx-ID: 3371 |

Cells on the move in Philadelphia
M.K. Sixt, C. Parent, Molecular Biology and Evolution 22 (2011) 724.
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M.K. Sixt, C. Parent, Molecular Biology and Evolution 22 (2011) 724.
2011 | Journal Article | IST-REx-ID: 3372 |

Inclusive fitness theory and eusociality
Abbot P et al. 2011. Inclusive fitness theory and eusociality. Nature. 471(7339), E1–E4.
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| PubMed | Europe PMC
Abbot P et al. 2011. Inclusive fitness theory and eusociality. Nature. 471(7339), E1–E4.
2011 | Journal Article | IST-REx-ID: 3373 |

Measuring the complete force field of an optical trap
M. Jahnel, M. Behrndt, A. Jannasch, E. Schaeffer, S. Grill, Optics Letters 36 (2011) 1260–1262.
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M. Jahnel, M. Behrndt, A. Jannasch, E. Schaeffer, S. Grill, Optics Letters 36 (2011) 1260–1262.
2011 | Journal Article | IST-REx-ID: 3374 |

Information transmission in genetic regulatory networks a review
G. Tkačik, A. Walczak, Journal of Physics: Condensed Matter 23 (2011).
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G. Tkačik, A. Walczak, Journal of Physics: Condensed Matter 23 (2011).
2011 | Journal Article | IST-REx-ID: 3375 |

The statistical mechanics of a polygenic character under stabilizing selection mutation and drift
H. de Vladar, N.H. Barton, Journal of the Royal Society Interface 8 (2011) 720–739.
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H. de Vladar, N.H. Barton, Journal of the Royal Society Interface 8 (2011) 720–739.
2011 | Journal Article | IST-REx-ID: 3376 |

Resolution of gene regulatory conflicts caused by combinations of antibiotics
M.T. Bollenbach, R. Kishony, Molecular Cell 42 (2011) 413–425.
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M.T. Bollenbach, R. Kishony, Molecular Cell 42 (2011) 413–425.
2011 | Journal Article | IST-REx-ID: 3377 |

Quantifying transversality by measuring the robustness of intersections
H. Edelsbrunner, D. Morozov, A. Patel, Foundations of Computational Mathematics 11 (2011) 345–361.
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H. Edelsbrunner, D. Morozov, A. Patel, Foundations of Computational Mathematics 11 (2011) 345–361.
2011 | Journal Article | IST-REx-ID: 3378
Persistent intersection homology
P. Bendich, J. Harer, Foundations of Computational Mathematics 11 (2011) 305–336.
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P. Bendich, J. Harer, Foundations of Computational Mathematics 11 (2011) 305–336.
2011 | Journal Article | IST-REx-ID: 3379 |

Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail
R. Row, J.-L. Maître, B. Martin, P. Stockinger, C.-P.J. Heisenberg, D. Kimelman, Developmental Biology 354 (2011) 102–110.
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R. Row, J.-L. Maître, B. Martin, P. Stockinger, C.-P.J. Heisenberg, D. Kimelman, Developmental Biology 354 (2011) 102–110.
2011 | Journal Article | IST-REx-ID: 3380 |

Mapping Mendelian traits in asexual progeny using changes in marker allele frequency
S. Logeswaran, N.H. Barton, Genetical Research 93 (2011) 221–232.
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S. Logeswaran, N.H. Barton, Genetical Research 93 (2011) 221–232.
2011 | Journal Article | IST-REx-ID: 3381 |

Formalisms for specifying Markovian population models
T.A. Henzinger, B. Jobstmann, V. Wolf, IJFCS: International Journal of Foundations of Computer Science 22 (2011) 823–841.
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T.A. Henzinger, B. Jobstmann, V. Wolf, IJFCS: International Journal of Foundations of Computer Science 22 (2011) 823–841.