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3496 Publications

2010 | Journal Article | IST-REx-ID: 3604
Senn H, Goodman S, Swanson G, Barton NH, Pemberton J. Investigating temporal changes in hybridisation and introgression between invasive sika (Cervus nippon) and native red deer (Cervus elaphus) on the Kintyre Peninsula, Scotland. Molecular Ecology. 2010;19(5):910-924. doi:10.1111/j.1365-294X.2009.04497.x
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2010 | Conference Paper | IST-REx-ID: 4361 | OA
Wies T, Zufferey D, Henzinger TA. Forward analysis of depth-bounded processes. In: Ong L, ed. Vol 6014. Springer; 2010:94-108. doi:10.1007/978-3-642-12032-9_8
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2010 | Journal Article | IST-REx-ID: 3779 | OA
Rosas U, Barton NH, Copsey L, Barbier De Reuille P, Coen E. Cryptic variation between species and the basis of hybrid performance. PLoS Biology. 2010;8(7). doi:10.1371/journal.pbio.1000429
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2010 | Research Data Reference | IST-REx-ID: 9764
Rosas U, Barton NH, Copsey L, Barbier De Reuille P, Coen E. Heterosis and the drift load. 2010. doi:10.1371/journal.pbio.1000429.s003
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2010 | Journal Article | IST-REx-ID: 9452
Zemach A, McDaniel IE, Silva P, ZILBERMAN D. Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science. 2010;328(5980):916-919. doi:10.1126/science.1186366
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2010 | Journal Article | IST-REx-ID: 9485 | OA
Zemach A, Kim MY, Silva P, et al. Local DNA hypomethylation activates genes in rice endosperm. Proceedings of the National Academy of Sciences. 2010;107(43):18729-18734. doi:10.1073/pnas.1009695107
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2010 | Journal Article | IST-REx-ID: 9489 | OA
Zemach A, ZILBERMAN D. Evolution of eukaryotic DNA methylation and the pursuit of safer sex. Current Biology. 2010;20(17):R780-R785. doi:10.1016/j.cub.2010.07.007
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2009 | Technical Report | IST-REx-ID: 5392 | OA
Chatterjee K. Probabilistic Automata on Infinite Words: Decidability and Undecidability Results. IST Austria; 2009. doi:10.15479/AT:IST-2009-0004
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2009 | Technical Report | IST-REx-ID: 5393 | OA
Chatterjee K, Henzinger TA, Jobstmann B, Radhakrishna A. Gist: A Solver for Probabilistic Games. IST Austria; 2009. doi:10.15479/AT:IST-2009-0003
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2009 | Technical Report | IST-REx-ID: 5394 | OA
Chatterjee K, Henzinger TA, Horn F. Improved Lower Bounds for Request-Response and Finitary Streett Games. IST Austria; 2009. doi:10.15479/AT:IST-2009-0002
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2009 | Technical Report | IST-REx-ID: 5395 | OA
Chatterjee K, Doyen L, Henzinger TA. Qualitative Analysis of Partially-Observable Markov Decision Processes. IST Austria; 2009. doi:10.15479/AT:IST-2009-0001
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2009 | Journal Article | IST-REx-ID: 3775 | OA
Barton NH, Coe J. On the application of statistical physics to evolutionary biology. Journal of Theoretical Biology. 2009;259(2):317-324. doi:10.1016/j.jtbi.2009.03.019
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2009 | Journal Article | IST-REx-ID: 3780 | OA
Davison A, Barton NH, Clarke B. The effect of chirality phenotype and genotype on the fecundity and viability of Partula suturalis and Lymnaea stagnalis: Implications for the evolution of sinistral snails. Journal of Evolutionary Biology. 2009;22(8):1624-1635. doi:10.1111/j.1420-9101.2009.01770.x
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2009 | Conference Paper | IST-REx-ID: 3837 | OA
Tripakis S, Lickly B, Henzinger TA, Lee E. On relational interfaces. In: EMSOFT ’09 Proceedings of the Seventh ACM International Conference on Embedded Software. ACM; 2009:67-76. doi:10.1145/1629335.1629346
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2009 | Conference Paper | IST-REx-ID: 3841 | OA
Henzinger TA, Jobstmann B, Wolf V. Formalisms for specifying Markovian population models. In: Vol 5797. Springer; 2009:3-23. doi:10.1007/978-3-642-04420-5_2
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2009 | Conference Paper | IST-REx-ID: 3843 | OA
Didier F, Henzinger TA, Mateescu M, Wolf V. Fast adaptive uniformization of the chemical master equation. In: Vol 4. IEEE; 2009:118-127. doi:10.1109/HiBi.2009.23
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2009 | Conference Paper | IST-REx-ID: 3844 | OA
Henzinger TA, Kirsch C, Marques E, Sokolova A. Distributed, modular HTL. In: IEEE; 2009:171-180. doi:10.1109/RTSS.2009.9
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2009 | Journal Article | IST-REx-ID: 3870 | OA
Chatterjee K, Henzinger TA, Horn F. Finitary winning in omega-regular games. ACM Transactions on Computational Logic (TOCL). 2009;11(1). doi:10.1145/1614431.1614432
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2009 | Conference Paper | IST-REx-ID: 3871 | OA
Chatterjee K, Doyen L, Henzinger TA. Probabilistic weighted automata. In: Vol 5710. Springer; 2009:244-258. doi:10.1007/978-3-642-04081-8_17
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2009 | Conference Paper | IST-REx-ID: 3968 | OA
Edelsbrunner H, Harer J. The persistent Morse complex segmentation of a 3-manifold. In: Vol 5903. Springer; 2009:36-50. doi:10.1007/978-3-642-10470-1_4
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2009 | Journal Article | IST-REx-ID: 4136 | OA
Polechova J, Barton NH, Marion G. Species’ range: Adaptation in space and time. American Naturalist. 2009;174(5):E186-E204. doi:10.1086/605958
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2009 | Journal Article | IST-REx-ID: 4231
Barton NH, De Vladar H. Statistical mechanics and the evolution of polygenic quantitative traits. Genetics. 2009;181(3):997-1011. doi:10.1534/genetics.108.099309
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2009 | Journal Article | IST-REx-ID: 4242 | OA
Barton NH, De Cara M. The evolution of strong reproductive isolation. Evolution; International Journal of Organic Evolution. 2009;63(5):1171-1190. doi:10.1111/j.1558-5646.2009.00622.x
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2009 | Conference Paper | IST-REx-ID: 4542 | OA
Chatterjee K, Doyen L, Henzinger TA. Alternating weighted automata. In: Vol 5699. Springer; 2009:3-13. doi:10.1007/978-3-642-03409-1_2
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2009 | Conference Paper | IST-REx-ID: 4543
Chatterjee K, Henzinger TA, Horn F. Stochastic games with finitary objectives. In: Vol 5734. Springer; 2009:34-54. doi:10.1007/978-3-642-03816-7_4
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2009 | Conference Paper | IST-REx-ID: 4545 | OA
Chatterjee K, Doyen L, Henzinger TA. A survey of stochastic games with limsup and liminf objectives. In: Vol 5556. Springer; 2009:1-15. doi:10.1007/978-3-642-02930-1_1
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2009 | Conference Paper | IST-REx-ID: 4569 | OA
Bloem R, Chatterjee K, Henzinger TA, Jobstmann B. Better quality in synthesis through quantitative objectives. In: Vol 5643. Springer; 2009:140-156. doi:10.1007/978-3-642-02658-4_14
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2009 | Book Chapter | IST-REx-ID: 3675
Barton NH. Why sex and recombination? . In: Cold Spring Harbor Symposia on Quantitative Biology. Vol 74. Cold Spring Harbor Laboratory Press; 2009:187-195. doi:10.1101/sqb.2009.74.030
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2009 | Journal Article | IST-REx-ID: 9453 | OA
Hsieh T-F, Ibarra CA, Silva P, et al. Genome-wide demethylation of Arabidopsis endosperm. Science. 2009;324(5933):1451-1454. doi:10.1126/science.1172417
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2008 | Journal Article | IST-REx-ID: 9457 | OA
ZILBERMAN D, Coleman-Derr D, Ballinger T, Henikoff S. Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature. 2008;456(7218):125-129. doi:10.1038/nature07324
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2008 | Journal Article | IST-REx-ID: 9537
ZILBERMAN D. The evolving functions of DNA methylation. Current Opinion in Plant Biology. 2008;11(5):554-559. doi:10.1016/j.pbi.2008.07.004
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2008 | Journal Article | IST-REx-ID: 517
Barton NH. Identity and coalescence in structured populations: A commentary on “Inbreeding coefficients and coalescence times” by Montgomery Slatkin. Genetical Research. 2008;89(5-6):475-477. doi:10.1017/S0016672308009683
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2007 | Journal Article | IST-REx-ID: 9487 | OA
Penterman J, ZILBERMAN D, Huh JH, Ballinger T, Henikoff S, Fischer RL. DNA demethylation in the Arabidopsis genome. Proceedings of the National Academy of Sciences. 2007;104(16):6752-6757. doi:10.1073/pnas.0701861104
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2007 | Other Publication | IST-REx-ID: 9504
ZILBERMAN D. The Human Promoter Methylome. Vol 39. Nature Publishing Group; 2007:442-443. doi:10.1038/ng0407-442
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2007 | Journal Article | IST-REx-ID: 9524 | OA
ZILBERMAN D, Henikoff S. Genome-wide analysis of DNA methylation patterns. Development. 2007;134(22):3959-3965. doi:10.1242/dev.001131
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2006 | Journal Article | IST-REx-ID: 9505
ZILBERMAN D, Gehring M, Tran RK, Ballinger T, Henikoff S. Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nature Genetics. 2006;39(1):61-69. doi:10.1038/ng1929
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2005 | Journal Article | IST-REx-ID: 9491 | OA
Tran RK, Henikoff JG, ZILBERMAN D, Ditt RF, Jacobsen SE, Henikoff S. DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Current Biology. 2005;15(2):154-159. doi:10.1016/j.cub.2005.01.008
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2005 | Journal Article | IST-REx-ID: 9514 | OA
Tran RK, ZILBERMAN D, de Bustos C, et al. Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biology. 2005;6(11). doi:10.1186/gb-2005-6-11-r90
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2005 | Journal Article | IST-REx-ID: 9529
ZILBERMAN D, Henikoff S. Epigenetic inheritance in Arabidopsis: Selective silence. Current Opinion in Genetics and Development. 2005;15(5):557-562. doi:10.1016/j.gde.2005.07.002
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2004 | Journal Article | IST-REx-ID: 9493 | OA
ZILBERMAN D, Cao X, Johansen LK, Xie Z, Carrington JC, Jacobsen SE. Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Current Biology. 2004;14(13):1214-1220. doi:10.1016/j.cub.2004.06.055
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2004 | Journal Article | IST-REx-ID: 9454
Chan SW-L, ZILBERMAN D, Xie Zhixin, Johansen Lisa K., Carrington JC, Jacobsen SE. RNA silencing genes control de novo DNA methylation. Science. 2004;303(5662):1336. doi:10.1126/science.1095989
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2004 | Journal Article | IST-REx-ID: 9517 | OA
Xie Z, Johansen LK, Gustafson AM, et al. Genetic and functional diversification of small RNA pathways in plants. PLoS Biology. 2004;2(5):0642-0652. doi:10.1371/journal.pbio.0020104
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2004 | Journal Article | IST-REx-ID: 9511 | OA
ZILBERMAN D, Henikoff S. Silencing of transposons in plant genomes: kick them when they’re down. Genome Biology. 2004;5(12). doi:10.1186/gb-2004-5-12-249
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2003 | Journal Article | IST-REx-ID: 9495 | OA
Cao X, Aufsatz W, ZILBERMAN D, et al. Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Current Biology. 2003;13(24):2212-2217. doi:10.1016/j.cub.2003.11.052
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2003 | Journal Article | IST-REx-ID: 9455
ZILBERMAN D, Cao Xiaofeng, Jacobsen SE. ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science. 2003;299(5607):716-719. doi:10.1126/science.1079695
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2001 | Journal Article | IST-REx-ID: 9444
Lindroth AM, Cao X, Jackson JP, et al. Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation. Science. 2001;292(5524):2077-2080. doi:10.1126/science.1059745
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