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5039 Publications

2018 | Journal Article | IST-REx-ID: 5780 | OA
Genetically encodable bioluminescent system from fungi
Kotlobay AA, Sarkisyan K, Mokrushina YA, Marcet-Houben M, Serebrovskaya EO, Markina NM, Gonzalez Somermeyer L, Gorokhovatsky AY, Vvedensky A, Purtov KV, Petushkov VN, Rodionova NS, Chepurnyh TV, Fakhranurova L, Guglya EB, Ziganshin R, Tsarkova AS, Kaskova ZM, Shender V, Abakumov M, Abakumova TO, Povolotskaya IS, Eroshkin FM, Zaraisky AG, Mishin AS, Dolgov SV, Mitiouchkina TY, Kopantzev EP, Waldenmaier HE, Oliveira AG, Oba Y, Barsova E, Bogdanova EA, Gabaldón T, Stevani CV, Lukyanov S, Smirnov IV, Gitelson JI, Kondrashov F, Yampolsky IV. 2018. Genetically encodable bioluminescent system from fungi. Proceedings of the National Academy of Sciences of the United States of America. 115(50), 12728–12732.
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 428 | OA
Gibberellin DELLA signaling targets the retromer complex to redirect protein trafficking to the plasma membrane
Y. Salanenka, I. Verstraeten, C. Löfke, K. Tabata, S. Naramoto, M. Glanc, J. Friml, PNAS 115 (2018) 3716–3721.
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 62 | OA
Flexible learning-free segmentation and reconstruction of neural volumes
A. Shabazi, J. Kinnison, R. Vescovi, M. Du, R. Hill, M.A. Jösch, M. Takeno, H. Zeng, N. Da Costa, J. Grutzendler, N. Kasthuri, W. Scheirer, Scientific Reports 8 (2018).
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 437 | OA
Fast and efficient genetic engineering of hematopoietic precursor cells for the study of dendritic cell migration
A.F. Leithner, J. Renkawitz, I. de Vries, R. Hauschild, H. Haecker, M.K. Sixt, European Journal of Immunology 48 (2018) 1074–1077.
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 617 | OA
Genotype and diet affect resistance, survival, and fecundity but not fecundity tolerance
M. Kutzer, J. Kurtz, S. Armitage, Journal of Evolutionary Biology 31 (2018) 159–171.
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
2018 | Journal Article | IST-REx-ID: 5888 | OA
Genomics in neurodevelopmental disorders: an avenue to personalized medicine
D.-C. Tarlungeanu, G. Novarino, Experimental & Molecular Medicine 50 (2018).
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2018 | Journal Article | IST-REx-ID: 295 | OA
Fermionic behavior of ideal anyons
D. Lundholm, R. Seiringer, Letters in Mathematical Physics 108 (2018) 2523–2541.
[Published Version] View | Files available | DOI | WoS | arXiv
 
2018 | Journal Article | IST-REx-ID: 555 | OA
Glycosaminoglycans in extracellular matrix organisation: Are concepts from soft matter physics key to understanding the formation of perineuronal nets?
R. Richter, N.S. Baranova, A. Day, J. Kwok, Current Opinion in Structural Biology 50 (2018) 65–74.
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2018 | Journal Article | IST-REx-ID: 448 | OA
Hemimetabolous genomes reveal molecular basis of termite eusociality
Harrison M, Jongepier E, Robertson H, Arning N, Bitard Feildel T, Chao H, Childers C, Dinh H, Doddapaneni H, Dugan S, Gowin J, Greiner C, Han Y, Hu H, Hughes D, Huylmans AK, Kemena K, Kremer L, Lee S, López Ezquerra A, Mallet L, Monroy Kuhn J, Moser A, Murali S, Muzny D, Otani S, Piulachs M, Poelchau M, Qu J, Schaub F, Wada Katsumata A, Worley K, Xie Q, Ylla G, Poulsen M, Gibbs R, Schal C, Richards S, Belles X, Korb J, Bornberg Bauer E. 2018. Hemimetabolous genomes reveal molecular basis of termite eusociality. Nature Ecology and Evolution. 2(3), 557–566.
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 723 | OA
How to escape local optima in black box optimisation when non elitism outperforms elitism
P. Oliveto, T. Paixao, J. Pérez Heredia, D. Sudholt, B. Trubenova, Algorithmica 80 (2018) 1604–1633.
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 321 | OA
Guest editors' introduction to the special section on learning with Shared information for computer vision and multimedia analysis
T. Darrell, C. Lampert, N. Sebe, Y. Wu, Y. Yan, IEEE Transactions on Pattern Analysis and Machine Intelligence 40 (2018) 1029–1031.
[Published Version] View | Files available | DOI | WoS
 
2018 | Research Data Reference | IST-REx-ID: 9841 | OA
Data from: Hemimetabolous genomes reveal molecular basis of termite eusociality
Harrison MC, Jongepier E, Robertson HM, Arning N, Bitard-Feildel T, Chao H, Childers CP, Dinh H, Doddapaneni H, Dugan S, Gowin J, Greiner C, Han Y, Hu H, Hughes DST, Huylmans AK, Kemena C, Kremer LPM, Lee SL, Lopez-Ezquerra A, Mallet L, Monroy-Kuhn JM, Moser A, Murali SC, Muzny DM, Otani S, Piulachs M-D, Poelchau M, Qu J, Schaub F, Wada-Katsumata A, Worley KC, Xie Q, Ylla G, Poulsen M, Gibbs RA, Schal C, Richards S, Belles X, Korb J, Bornberg-Bauer E. 2018. Data from: Hemimetabolous genomes reveal molecular basis of termite eusociality, Dryad, 10.5061/dryad.51d4r.
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2018 | Conference Paper | IST-REx-ID: 397
Harnessing epoch-based reclamation for efficient range queries
M. Arbel Raviv, T.A. Brown, in:, ACM, 2018, pp. 14–27.
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2018 | Journal Article | IST-REx-ID: 32 | OA
In Vivo regulation of Oligodendrocyte processor cell proliferation and differentiation by the AMPA-receptor Subunit GluA2
T. Chen, B. Kula, B. Nagy, R. Barzan, A. Gall, I. Ehrlich, M. Kukley, Cell Reports 25 (2018) 852–861.e7.
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 5672 | OA
IgM's exit route
A. Reversat, M.K. Sixt, Journal of Experimental Medicine 215 (2018) 2959–2961.
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 398
Immediate flow disruption as a prognostic factor after flow diverter treatment long term experience with the pipeline embolization device
P. Dodier, J. Frischer, W. Wang, T. Auzinger, A. Mallouhi, W. Serles, A. Gruber, E. Knosp, G. Bavinzski, World Neurosurgery 13 (2018) e568–e578.
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2018 | Journal Article | IST-REx-ID: 458 | OA
Incircular nets and confocal conics
A. Akopyan, A. Bobenko, Transactions of the American Mathematical Society 370 (2018) 2825–2854.
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2018 | Journal Article | IST-REx-ID: 426
Individual- and ejaculate-specific sperm traits in ant males
S. Metzler, A. Schrempf, J. Heinze, Journal of Insect Physiology 107 (2018) 284–290.
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2018 | Conference Paper | IST-REx-ID: 5788 | OA
Infinite-duration poorman-bidding games
G. Avni, T.A. Henzinger, R. Ibsen-Jensen, in:, Springer, 2018, pp. 21–36.
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 
2018 | Journal Article | IST-REx-ID: 150 | OA
Inositol phosphates are assembly co-factors for HIV-1
R. Dick, K.K. Zadrozny, C. Xu, F.K. Schur, T.D. Lyddon, C.L. Ricana, J.M. Wagner, J.R. Perilla, P.B.K. Ganser, M.C. Johnson, O. Pornillos, V. Vogt, Nature 560 (2018) 509–512.
[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 
2018 | Journal Article | IST-REx-ID: 303 | OA
Introduction to tropical series and wave dynamic on them
N. Kalinin, M. Shkolnikov, Discrete and Continuous Dynamical Systems- Series A 38 (2018) 2827–2849.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | arXiv
 
2018 | Conference Paper | IST-REx-ID: 14202 | OA
Boosting black box variational inference
F. Locatello, G. Dresdner, R. Khanna, I. Valera, G. Rätsch, in:, Advances in Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2018.
[Preprint] View | Download Preprint (ext.) | arXiv
 
2018 | Conference Paper | IST-REx-ID: 14201 | OA
Boosting variational inference: An optimization perspective
F. Locatello, R. Khanna, J. Ghosh, G. Rätsch, in:, Proceedings of the 21st International Conference on Artificial Intelligence and Statistics, ML Research Press, 2018, pp. 464–472.
[Preprint] View | Download Preprint (ext.) | arXiv
 
2018 | Conference Paper | IST-REx-ID: 14198 | OA
SOM-VAE: Interpretable discrete representation learning on time series
V. Fortuin, M. Hüser, F. Locatello, H. Strathmann, G. Rätsch, in:, International Conference on Learning Representations, 2018.
[Preprint] View | Download Preprint (ext.) | arXiv
 
2018 | Conference Paper | IST-REx-ID: 14203 | OA
A conditional gradient framework for composite convex minimization with applications to semidefinite programming
A. Yurtsever, O. Fercoq, F. Locatello, V. Cevher, in:, Proceedings of the 35th International Conference on Machine Learning, ML Research Press, 2018, pp. 5727–5736.
[Preprint] View | Download Preprint (ext.) | arXiv
 
2018 | Journal Article | IST-REx-ID: 282 | OA
Introgression of a block of genome under infinitesimal selection
H. Sachdeva, N.H. Barton, Genetics 209 (2018) 1279–1303.
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2018 | Conference Paper | IST-REx-ID: 108 | OA
Inverted leftover hash lemma
M. Obremski, M. Skórski, in:, IEEE, 2018.
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2018 | Conference Paper | IST-REx-ID: 14204 | OA
On matching pursuit and coordinate descent
F. Locatello, A. Raj, S.P. Karimireddy, G. Rätsch, B. Schölkopf, S.U. Stich, M. Jaggi, in:, Proceedings of the 35th International Conference on Machine Learning, ML Research Press, 2018, pp. 3198–3207.
[Preprint] View | Download Preprint (ext.) | arXiv
 
2018 | Conference Paper | IST-REx-ID: 160 | OA
Layered Concurrent Programs
B. Kragl, S. Qadeer, in:, Springer, 2018, pp. 79–102.
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 280
KIRA1 and ORESARA1 terminate flower receptivity by promoting cell death in the stigma of Arabidopsis
Z. Gao, A. Daneva, Y. Salanenka, M. Van Durme, M. Huysmans, Z. Lin, F. De Winter, S. Vanneste, M. Karimi, J. Van De Velde, K. Vandepoele, D. Van De Walle, K. Dewettinck, B. Lambrecht, M. Nowack, Nature Plants 4 (2018) 365–375.
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2018 | Journal Article | IST-REx-ID: 503
Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains
K. Tomasek, T. Bergmiller, C.C. Guet, Journal of Biotechnology 268 (2018) 40–52.
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2018 | Journal Article | IST-REx-ID: 82 | OA
Leaky resistance and the conditions for the existence of lytic bacteriophage
W. Chaudhry, M. Pleska, N. Shah, H. Weiss, I. Mccall, J. Meyer, A. Gupta, C.C. Guet, B. Levin, PLoS Biology 16 (2018).
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 4 | OA
Learning three-dimensional flow for interactive aerodynamic design
N. Umetani, B. Bickel, ACM Trans. Graph. 37 (2018).
[Submitted Version] View | Files available | DOI | WoS
 
2018 | Conference Paper | IST-REx-ID: 183
Localizing faults in simulink/stateflow models with STL
E. Bartocci, T. Ferrere, N. Manjunath, D. Nickovic, in:, Association for Computing Machinery, Inc, 2018, pp. 197–206.
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2018 | Journal Article | IST-REx-ID: 566 | OA
Local inhomogeneous circular law
J. Alt, L. Erdös, T.H. Krüger, Annals Applied Probability 28 (2018) 148–203.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | arXiv
 
2018 | Journal Article | IST-REx-ID: 106 | OA
Long geodesics on convex surfaces
A. Akopyan, A. Petrunin, Mathematical Intelligencer 40 (2018) 26–31.
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 
2018 | Research Data Reference | IST-REx-ID: 9810
Numerical data used in figures
W. Chaudhry, M. Pleska, N. Shah, H. Weiss, I. Mccall, J. Meyer, A. Gupta, C.C. Guet, B. Levin, (2018).
[Published Version] View | Files available | DOI
 
2018 | Journal Article | IST-REx-ID: 275 | OA
Lymphatic exosomes promote dendritic cell migration along guidance cues
M. Brown, L. Johnson, D. Leone, P. Májek, K. Vaahtomeri, D. Senfter, N. Bukosza, H. Schachner, G. Asfour, B. Langer, R. Hauschild, K. Parapatics, Y. Hong, K. Bennett, R. Kain, M. Detmar, M.K. Sixt, D. Jackson, D. Kerjaschki, Journal of Cell Biology 217 (2018) 2205–2221.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2018 | Journal Article | IST-REx-ID: 158 | OA
Maternal auxin supply contributes to early embryo patterning in Arabidopsis
H. Robert, C. Park, C. Gutièrrez, B. Wójcikowska, A. Pěnčík, O. Novák, J. Chen, W. Grunewald, T. Dresselhaus, J. Friml, T. Laux, Nature Plants 4 (2018) 548–553.
[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 
2018 | Journal Article | IST-REx-ID: 152 | OA
Mammalian mitochondrial complex I structure and disease causing mutations
K. Fiedorczuk, L.A. Sazanov, Trends in Cell Biology 28 (2018) 835–867.
[Submitted Version] View | Files available | DOI | WoS
 
2018 | Conference Paper | IST-REx-ID: 310 | OA
Lower bounds for symbolic computation on graphs: Strongly connected components, liveness, safety, and diameter
K. Chatterjee, W. Dvorák, M.H. Henzinger, V. Loitzenbauer, in:, ACM, 2018, pp. 2341–2356.
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 
2018 | Journal Article | IST-REx-ID: 436 | OA
Manipulating the flow of thermal noise in quantum devices
S. Barzanjeh, M. Aquilina, A. Xuereb, Physical Review Letters 120 (2018).
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | arXiv
 
2018 | Journal Article | IST-REx-ID: 5858 | OA
Mechanistic description of spatial processes using integrative modelling of noise-corrupted imaging data
S. Hross, F.J. Theis, M.K. Sixt, J. Hasenauer, Journal of the Royal Society Interface 15 (2018).
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 16 | OA
Mixing layer instability and vorticity amplification in a creeping viscoelastic flow
A. Varshney, V. Steinberg, Physical Review Fluids 3 (2018).
[Submitted Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 43 | OA
Model of bacterial toxin-dependent pathogenesis explains infective dose
J. Rybicki, E. Kisdi, J. Anttila, PNAS 115 (2018) 10690–10695.
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2018 | Journal Article | IST-REx-ID: 13 | OA
Metamolds: Computational design of silicone molds
T. Alderighi, L. Malomo, D. Giorgi, N. Pietroni, B. Bickel, P. Cignoni, ACM Trans. Graph. 37 (2018).
[Submitted Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 137 | OA
Monitoring hippocampal glycine with the computationally designed optical sensor GlyFS
W. Zhang, M. Herde, J. Mitchell, J. Whitfield, A. Wulff, V. Vongsouthi, I. Sanchez-Romero, P. Gulakova, D. Minge, B. Breithausen, S. Schoch, H.L. Janovjak, C. Jackson, C. Henneberger, Nature Chemical Biology 14 (2018) 861–869.
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2018 | Book Chapter | IST-REx-ID: 153
Micro-engineered “pillar forests” to study cell migration in complex but controlled 3D environments
J. Renkawitz, A. Reversat, A.F. Leithner, J. Merrin, M.K. Sixt, in:, Methods in Cell Biology, Academic Press, 2018, pp. 79–91.
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2018 | Journal Article | IST-REx-ID: 54
Mechanical force-driven adherents junction remodeling and epithelial dynamics
D.C. Nunes Pinheiro, Y. Bellaïche, Developmental Cell 47 (2018) 3–19.
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2018 | Journal Article | IST-REx-ID: 276 | OA
Nano-scale microfluidics to study 3D chemotaxis at the single cell level
C. Frick, P. Dettinger, J. Renkawitz, A. Jauch, C. Berger, M. Recher, T. Schroeder, M. Mehling, PLoS One 13 (2018).
[Published Version] View | Files available | DOI | WoS
 

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