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3878 Publications
2016 | Journal Article | IST-REx-ID: 1448 |

Fathi, M., & Maas, J. (2016). Entropic Ricci curvature bounds for discrete interacting systems. The Annals of Applied Probability. Institute of Mathematical Statistics. https://doi.org/10.1214/15-AAP1133
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2016 | Journal Article | IST-REx-ID: 1475 |

Toshima, J., Furuya, E., Nagano, M., Kanno, C., Sakamoto, Y., Ebihara, M., … Toshima, J. (2016). Yeast Eps15-like endocytic protein Pan1p regulates the interaction between endocytic vesicles, endosomes and the actin cytoskeleton. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.10276
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2016 | Journal Article | IST-REx-ID: 1476 |

Toshima, J., Horikomi, C., Okada, A., Hatori, M., Nagano, M., Masuda, A., … Toshima, J. (2016). Srv2/CAP is required for polarized actin cable assembly and patch internalization during clathrin-mediated endocytosis. Journal of Cell Science. Company of Biologists. https://doi.org/10.1242/jcs.176651
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2016 | Journal Article | IST-REx-ID: 1477 |

Chatterjee, K., Chmelik, M., & Tracol, M. (2016). What is decidable about partially observable Markov decision processes with ω-regular objectives. Journal of Computer and System Sciences. Elsevier. https://doi.org/10.1016/j.jcss.2016.02.009
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| arXiv
2016 | Journal Article | IST-REx-ID: 1478 |

Seiringer, R., & Warzel, S. (2016). Decay of correlations and absence of superfluidity in the disordered Tonks-Girardeau gas. New Journal of Physics. IOP Publishing Ltd. https://doi.org/10.1088/1367-2630/18/3/035002
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2016 | Journal Article | IST-REx-ID: 1479 |

Krenn, S., Pietrzak, K. Z., Wadia, A., & Wichs, D. (2016). A counterexample to the chain rule for conditional HILL entropy. Computational Complexity. Springer. https://doi.org/10.1007/s00037-015-0120-9
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2016 | Journal Article | IST-REx-ID: 1480 |

Michałek, M., Sturmfels, B., Uhler, C., & Zwiernik, P. (2016). Exponential varieties. Proceedings of the London Mathematical Society. Oxford University Press. https://doi.org/10.1112/plms/pdv066
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2016 | Journal Article | IST-REx-ID: 1482 |

Adibi, M., Yoshida, S., Weijers, D., & Fleck, C. (2016). Centering the organizing center in the Arabidopsis thaliana shoot apical meristem by a combination of cytokinin signaling and self-organization. PLoS One. Public Library of Science. https://doi.org/10.1371/journal.pone.0147830
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2016 | Journal Article | IST-REx-ID: 1484 |

Chen, X., Wu, S., Liu, Z., & Friml, J. (2016). Environmental and endogenous control of cortical microtubule orientation. Trends in Cell Biology. Cell Press. https://doi.org/10.1016/j.tcb.2016.02.003
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2016 | Journal Article | IST-REx-ID: 1485 |

De Martino, D. (2016). Genome-scale estimate of the metabolic turnover of E. Coli from the energy balance analysis. Physical Biology. IOP Publishing Ltd. https://doi.org/10.1088/1478-3975/13/1/016003
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2016 | Journal Article | IST-REx-ID: 1486 |

Hainzl, C., & Seiringer, R. (2016). The Bardeen–Cooper–Schrieffer functional of superconductivity and its mathematical properties. Journal of Mathematical Physics. American Institute of Physics. https://doi.org/10.1063/1.4941723
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2016 | Journal Article | IST-REx-ID: 1487 |

Grion, N., Akrami, A., Zuo, Y., Stella, F., & Diamond, M. (2016). Coherence between rat sensorimotor system and hippocampus is enhanced during tactile discrimination. PLoS Biology. Public Library of Science. https://doi.org/10.1371/journal.pbio.1002384
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2016 | Journal Article | IST-REx-ID: 1488 |

Riccio, P., Cebrián, C., Zong, H., Hippenmeyer, S., & Costantini, F. (2016). Ret and Etv4 promote directed movements of progenitor cells during renal branching morphogenesis. PLoS Biology. Public Library of Science. https://doi.org/10.1371/journal.pbio.1002382
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2016 | Journal Article | IST-REx-ID: 1489 |

Ajanki, O. H., Erdös, L., & Krüger, T. H. (2016). Local spectral statistics of Gaussian matrices with correlated entries. Journal of Statistical Physics. Springer. https://doi.org/10.1007/s10955-016-1479-y
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2016 | Journal Article | IST-REx-ID: 1490 |

Russo, E., Teijeira, A., Vaahtomeri, K., Willrodt, A., Bloch, J., Nitschké, M., … Halin, C. (2016). Intralymphatic CCL21 promotes tissue egress of dendritic cells through afferent lymphatic vessels. Cell Reports. Cell Press. https://doi.org/10.1016/j.celrep.2016.01.048
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2016 | Journal Article | IST-REx-ID: 1491 |

Lewin, M., Nam, P., & Rougerie, N. (2016). The mean-field approximation and the non-linear Schrödinger functional for trapped Bose gases. Transactions of the American Mathematical Society. American Mathematical Society. https://doi.org/10.1090/tran/6537
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2016 | Journal Article | IST-REx-ID: 1492 |

Marhavý, P., Montesinos López, J. C., Abuzeineh, A., Van Damme, D., Vermeer, J., Duclercq, J., … Benková, E. (2016). Targeted cell elimination reveals an auxin-guided biphasic mode of lateral root initiation. Genes and Development. Cold Spring Harbor Laboratory Press. https://doi.org/10.1101/gad.276964.115
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2016 | Journal Article | IST-REx-ID: 1493 |

Petrat, S. P., & Pickl, P. (2016). A new method and a new scaling for deriving fermionic mean-field dynamics. Mathematical Physics, Analysis and Geometry. Springer. https://doi.org/10.1007/s11040-016-9204-2
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2016 | Journal Article | IST-REx-ID: 1494
Lemoult, G. M., Shi, L., Avila, K., Jalikop, S. V., Avila, M., & Hof, B. (2016). Directed percolation phase transition to sustained turbulence in Couette flow. Nature Physics. Nature Publishing Group. https://doi.org/10.1038/nphys3675
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2016 | Journal Article | IST-REx-ID: 1496 |

Amaro, P., Fratini, F., Safari, L., Machado, J., Guerra, M., Indelicato, P., & Santos, J. (2016). Relativistic evaluation of the two-photon decay of the metastable 1s22s2p3P0 state in berylliumlike ions with an effective-potential model. Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society. https://doi.org/10.1103/PhysRevA.93.032502
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2016 | Journal Article | IST-REx-ID: 1521
Berrisford, J., Baradaran, R., & Sazanov, L. A. (2016). Structure of bacterial respiratory complex I. Biochimica et Biophysica Acta - Bioenergetics. Elsevier. https://doi.org/10.1016/j.bbabio.2016.01.012
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2016 | Journal Article | IST-REx-ID: 1522 |

Avvakumov, S. (2016). The classification of certain linked 3-manifolds in 6-space. Moscow Mathematical Journal. Independent University of Moscow. https://doi.org/10.17323/1609-4514-2016-16-1-1-25
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| arXiv
2016 | Journal Article | IST-REx-ID: 1523 |

Gundert, A., & Wagner, U. (2016). On topological minors in random simplicial complexes. Proceedings of the American Mathematical Society. American Mathematical Society. https://doi.org/10.1090/proc/12824
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2016 | Conference Paper | IST-REx-ID: 1524 |

Beica, A., Guet, C. C., & Petrov, T. (2016). Efficient reduction of kappa models by static inspection of the rule-set (Vol. 9271, pp. 173–191). Presented at the HSB: Hybrid Systems Biology, Madrid, Spain: Springer. https://doi.org/10.1007/978-3-319-26916-0_10
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2016 | Conference Paper | IST-REx-ID: 1526 |

Henzinger, T. A., Otop, J., & Samanta, R. (2016). Lipschitz robustness of timed I/O systems (Vol. 9583, pp. 250–267). Presented at the VMCAI: Verification, Model Checking and Abstract Interpretation, St. Petersburg, FL, USA: Springer. https://doi.org/10.1007/978-3-662-49122-5_12
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2016 | Journal Article | IST-REx-ID: 1529 |

Chatterjee, K., Chmelik, M., Gupta, R., & Kanodia, A. (2016). Optimal cost almost-sure reachability in POMDPs. Artificial Intelligence. Elsevier. https://doi.org/10.1016/j.artint.2016.01.007
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| arXiv
2016 | Journal Article | IST-REx-ID: 1008
Gnügge, R., Dharmarajan, L., Lang, M., & Stelling, J. (2016). An orthogonal permease–inducer–repressor feedback loop shows bistability. ACS Synthetic Biology. American Chemical Society. https://doi.org/10.1021/acssynbio.6b00013
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2016 | Journal Article | IST-REx-ID: 9456 |

Huff, J. T., Zilberman, D., & Roy, S. W. (2016). Mechanism for DNA transposons to generate introns on genomic scales. Nature. Springer Nature . https://doi.org/10.1038/nature20110
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2016 | Journal Article | IST-REx-ID: 9473 |

Hsieh, P.-H., He, S., Buttress, T., Gao, H., Couchman, M., Fischer, R. L., … Feng, X. (2016). Arabidopsis male sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.1619074114
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2016 | Journal Article | IST-REx-ID: 9477 |

Park, K., Kim, M. Y., Vickers, M., Park, J.-S., Hyun, Y., Okamoto, T., … Scholten, S. (2016). DNA demethylation is initiated in the central cells of Arabidopsis and rice. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.1619047114
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2016 | Conference Paper | IST-REx-ID: 948
Monk, T., Savin, C., & Lücke, J. (2016). Neurons equipped with intrinsic plasticity learn stimulus intensity statistics (Vol. 29, pp. 4285–4293). Presented at the NIPS: Neural Information Processing Systems, Barcelona, Spaine: Neural Information Processing Systems.
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2016 | Research Data Reference | IST-REx-ID: 9704 |

Mcmahon, D., Natsopoulou, M., Doublet, V., Fürst, M., Weging, S., Brown, M., … Paxton, R. (2016). Data from: Elevated virulence of an emerging viral genotype as a driver of honeybee loss. Dryad. https://doi.org/10.5061/dryad.cq7t1
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2016 | Research Data Reference | IST-REx-ID: 9710
Barton, N. H. (2016). Data from: How does epistasis influence the response to selection? Dryad. https://doi.org/10.5061/dryad.s5s7r
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2016 | Research Data Reference | IST-REx-ID: 9720
Mcmahon, D., Fürst, M., Caspar, J., Theodorou, P., Brown, M., & Paxton, R. (2016). Data from: A sting in the spit: widespread cross-infection of multiple RNA viruses across wild and managed bees. Dryad. https://doi.org/10.5061/dryad.4b565
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2016 | Research Data Reference | IST-REx-ID: 9862
Roux, C., Fraisse, C., Romiguier, J., Anciaux, Y., Galtier, N., & Bierne, N. (2016). Simulation study to test the robustness of ABC in face of recent times of divergence. Public Library of Science. https://doi.org/10.1371/journal.pbio.2000234.s016
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2016 | Research Data Reference | IST-REx-ID: 9863
Roux, C., Fraisse, C., Romiguier, J., Anciaux, Y., Galtier, N., & Bierne, N. (2016). Accessions of surveyed individuals, geographic locations and summary statistics. Public Library of Science. https://doi.org/10.1371/journal.pbio.2000234.s017
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2016 | Research Data Reference | IST-REx-ID: 9864
Fernandes Redondo, R. A., de Vladar, H., Włodarski, T., & Bollback, J. P. (2016). Data from evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family. The Royal Society. https://doi.org/10.6084/m9.figshare.4315652.v1
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2016 | Research Data Reference | IST-REx-ID: 9866
Zagórski, M. P., Burda, Z., & Wacław, B. (2016). ZIP-archived directory containing all data and computer programs. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1005218.s009
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2016 | Research Data Reference | IST-REx-ID: 9867
Hilbe, C., Hagel, K., & Milinski, M. (2016). Experimental game instructions. Public Library of Science. https://doi.org/10.1371/journal.pone.0163867.s008
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2016 | Research Data Reference | IST-REx-ID: 9868
Hilbe, C., Hagel, K., & Milinski, M. (2016). Experimental data. Public Library of Science. https://doi.org/10.1371/journal.pone.0163867.s009
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2016 | Research Data Reference | IST-REx-ID: 9869
Hillenbrand, P., Gerland, U., & Tkačik, G. (2016). Error bound on an estimator of position. Public Library of Science. https://doi.org/10.1371/journal.pone.0163628.s001
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2016 | Research Data Reference | IST-REx-ID: 9870
Hillenbrand, P., Gerland, U., & Tkačik, G. (2016). Computation of positional information in an Ising model. Public Library of Science. https://doi.org/10.1371/journal.pone.0163628.s002
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2016 | Research Data Reference | IST-REx-ID: 9871
Hillenbrand, P., Gerland, U., & Tkačik, G. (2016). Computation of positional information in a discrete morphogen field. Public Library of Science. https://doi.org/10.1371/journal.pone.0163628.s003
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2016 | Research Data Reference | IST-REx-ID: 9873
Boehm, A., Arnoldini, M., Bergmiller, T., Röösli, T., Bigosch, C., & Ackermann, M. (2016). Quantification of the growth rate reduction as a consequence of age-specific mortality. Public Library of Science. https://doi.org/10.1371/journal.pgen.1005974.s015
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2016 | Journal Article | IST-REx-ID: 1518 |

Lohse, K., Chmelik, M., Martin, S., & Barton, N. H. (2016). Efficient strategies for calculating blockwise likelihoods under the coalescent. Genetics. Genetics Society of America. https://doi.org/10.1534/genetics.115.183814
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2016 | Journal Article | IST-REx-ID: 1331 |

Zwack, P., De Clercq, I., Howton, T., Hallmark, H. T., Hurny, A., Keshishian, E., … Rashotte, A. (2016). Cytokinin response factor 6 represses cytokinin-associated genes during oxidative stress. Plant Physiology. American Society of Plant Biologists. https://doi.org/10.1104/pp.16.00415
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2016 | Journal Article | IST-REx-ID: 1252 |

Harker, S., Kokubu, H., Mischaikow, K., & Pilarczyk, P. (2016). Inducing a map on homology from a correspondence. Proceedings of the American Mathematical Society. American Mathematical Society. https://doi.org/10.1090/proc/12812
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| arXiv
2016 | Conference Paper | IST-REx-ID: 1140 |

Chatterjee, K., Dvoák, W., Henzinger, M., & Loitzenbauer, V. (2016). Model and objective separation with conditional lower bounds: disjunction is harder than conjunction. In Proceedings of the 31st Annual ACM/IEEE Symposium on Logic in Computer Science (pp. 197–206). New York, NY, USA: IEEE. https://doi.org/10.1145/2933575.2935304
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2016 | Journal Article | IST-REx-ID: 1321 |

Leithner, A. F., Eichner, A., Müller, J., REVERSAT, A., Brown, M., Schwarz, J., … Sixt, M. K. (2016). Diversified actin protrusions promote environmental exploration but are dispensable for locomotion of leukocytes. Nature Cell Biology. Nature Publishing Group. https://doi.org/10.1038/ncb3426
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2016 | Journal Article | IST-REx-ID: 1100 |

Sako, K., Pradhan, S., Barone, V., Inglés Prieto, Á., Mueller, P., Ruprecht, V., … Heisenberg, C.-P. J. (2016). Optogenetic control of nodal signaling reveals a temporal pattern of nodal signaling regulating cell fate specification during gastrulation. Cell Reports. Cell Press. https://doi.org/10.1016/j.celrep.2016.06.036
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