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3042 Publications
2013 | Journal Article | IST-REx-ID: 2850 | 
The simplest maximum entropy model for collective behavior in a neural network
G. Tkačik, O. Marre, T. Mora, D. Amodei, M. Berry, W. Bialek, Journal of Statistical Mechanics Theory and Experiment 2013 (2013).
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G. Tkačik, O. Marre, T. Mora, D. Amodei, M. Berry, W. Bialek, Journal of Statistical Mechanics Theory and Experiment 2013 (2013).
2013 | Journal Article | IST-REx-ID: 2851
A simple method for estimating the entropy of neural activity
M. Berry, G. Tkačik, J. Dubuis, O. Marre, R. Da Silveira, Journal of Statistical Mechanics Theory and Experiment 2013 (2013).
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M. Berry, G. Tkačik, J. Dubuis, O. Marre, R. Da Silveira, Journal of Statistical Mechanics Theory and Experiment 2013 (2013).
2013 | Journal Article | IST-REx-ID: 2853 |
Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection
D. Refardt, T. Bergmiller, R. Kümmerli, Proceedings of the Royal Society of London Series B Biological Sciences 280 (2013).
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D. Refardt, T. Bergmiller, R. Kümmerli, Proceedings of the Royal Society of London Series B Biological Sciences 280 (2013).
2013 | Journal Article | IST-REx-ID: 2854 |
Strategy improvement for concurrent reachability and turn based stochastic safety games
K. Chatterjee, L. De Alfaro, T.A. Henzinger, Journal of Computer and System Sciences 79 (2013) 640–657.
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K. Chatterjee, L. De Alfaro, T.A. Henzinger, Journal of Computer and System Sciences 79 (2013) 640–657.
2013 | Journal Article | IST-REx-ID: 2855 |
Mosaic analysis with double markers reveals cell type specific paternal growth dominance
S. Hippenmeyer, R. Johnson, L. Luo, Cell Reports 3 (2013) 960–967.
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S. Hippenmeyer, R. Johnson, L. Luo, Cell Reports 3 (2013) 960–967.
2013 | Journal Article | IST-REx-ID: 2856 |
Optical control of metabotropic glutamate receptors
J. Levitz, C. Pantoja, B. Gaub, H.L. Janovjak, A. Reiner, A. Hoagland, D. Schoppik, B. Kane, P. Stawski, A. Schier, D. Trauner, E. Isacoff, Nature Neuroscience 16 (2013) 507–516.
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J. Levitz, C. Pantoja, B. Gaub, H.L. Janovjak, A. Reiner, A. Hoagland, D. Schoppik, B. Kane, P. Stawski, A. Schier, D. Trauner, E. Isacoff, Nature Neuroscience 16 (2013) 507–516.
2013 | Journal Article | IST-REx-ID: 2857 |
Optical control of ligand-gated ion channels
S. Szobota, C. Mckenzie, H.L. Janovjak, Methods in Molecular Biology 998 (2013) 417–435.
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S. Szobota, C. Mckenzie, H.L. Janovjak, Methods in Molecular Biology 998 (2013) 417–435.
2013 | Journal Article | IST-REx-ID: 2858 |
The effect of one additional driver mutation on tumor progression
J. Reiter, I. Božić, B. Allen, K. Chatterjee, M. Nowak, Evolutionary Applications 6 (2013) 34–45.
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J. Reiter, I. Božić, B. Allen, K. Chatterjee, M. Nowak, Evolutionary Applications 6 (2013) 34–45.
2013 | Journal Article | IST-REx-ID: 2859 |
Homology and robustness of level and interlevel sets
P. Bendich, H. Edelsbrunner, D. Morozov, A. Patel, Homology, Homotopy and Applications 15 (2013) 51–72.
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P. Bendich, H. Edelsbrunner, D. Morozov, A. Patel, Homology, Homotopy and Applications 15 (2013) 51–72.
2013 | Journal Article | IST-REx-ID: 2860 |
Dynamic reconfiguration of hippocampal interneuron circuits during spatial learning
D. Dupret, J. O’Neill, J.L. Csicsvari, Neuron 78 (2013) 166–180.
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D. Dupret, J. O’Neill, J.L. Csicsvari, Neuron 78 (2013) 166–180.
2013 | Journal Article | IST-REx-ID: 2861
Lyapunov exponent and topological entropy plateaus in piecewise linear maps
V. Botella Soler, J. Oteo, J. Ros, P. Glendinning, Journal of Physics A: Mathematical and Theoretical 46 (2013).
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V. Botella Soler, J. Oteo, J. Ros, P. Glendinning, Journal of Physics A: Mathematical and Theoretical 46 (2013).
2013 | Journal Article | IST-REx-ID: 2862 |
Lethal giant larvae 2 regulates development of the ciliated organ Kupffer’s vesicle
H. Tay, S. Schulze, J. Compagnon, F. Foley, C.-P.J. Heisenberg, H.J. Yost, S. Abdelilah Seyfried, J. Amack, Development 140 (2013) 1550–1559.
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H. Tay, S. Schulze, J. Compagnon, F. Foley, C.-P.J. Heisenberg, H.J. Yost, S. Abdelilah Seyfried, J. Amack, Development 140 (2013) 1550–1559.
2013 | Journal Article | IST-REx-ID: 2863 |
Stimulus-dependent maximum entropy models of neural population codes
E. Granot Atedgi, G. Tkačik, R. Segev, E. Schneidman, PLoS Computational Biology 9 (2013).
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E. Granot Atedgi, G. Tkačik, R. Segev, E. Schneidman, PLoS Computational Biology 9 (2013).
2013 | Journal Article | IST-REx-ID: 2880 |
Auxin reflux between the endodermis and pericycle promotes lateral root initiation
P. Marhavý, M. Vanstraelen, B. De Rybel, D. Zhaojun, M. Bennett, T. Beeckman, E. Benková, EMBO Journal 32 (2013) 149–158.
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P. Marhavý, M. Vanstraelen, B. De Rybel, D. Zhaojun, M. Bennett, T. Beeckman, E. Benková, EMBO Journal 32 (2013) 149–158.
2013 | Journal Article | IST-REx-ID: 2882 |
Asymmetric gibberellin signaling regulates vacuolar trafficking of PIN auxin transporters during root gravitropism
C. Löfke, M. Zwiewka, I. Heilmann, M. Van Montagu, T. Teichmann, J. Friml, PNAS 110 (2013) 3627–3632.
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C. Löfke, M. Zwiewka, I. Heilmann, M. Van Montagu, T. Teichmann, J. Friml, PNAS 110 (2013) 3627–3632.
2013 | Journal Article | IST-REx-ID: 2883 |
Arabidopsis TWISTED DWARF1 functionally interacts with auxin exporter ABCB1 on the root plasma membrane
B. Wang, A. Bailly, M. Zwiewk, S. Henrichs, E. Azzarello, S. Mancuso, M. Maeshima, J. Friml, A. Schulz, M. Geisler, Plant Cell 25 (2013) 202–214.
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B. Wang, A. Bailly, M. Zwiewk, S. Henrichs, E. Azzarello, S. Mancuso, M. Maeshima, J. Friml, A. Schulz, M. Geisler, Plant Cell 25 (2013) 202–214.
2013 | Journal Article | IST-REx-ID: 2884
Cell adhesion mechanics of zebrafish gastrulation
J.-L. Maître, H. Berthoumieux, G. Krens, G. Salbreux, F. Julicher, E. Paluch, C.-P.J. Heisenberg, Medecine Sciences 29 (2013) 147–150.
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J.-L. Maître, H. Berthoumieux, G. Krens, G. Salbreux, F. Julicher, E. Paluch, C.-P.J. Heisenberg, Medecine Sciences 29 (2013) 147–150.
2013 | Conference (Editor) | IST-REx-ID: 2885
Mathematical and Engineering Methods in Computer Science
A. Kucera, T.A. Henzinger, J. Nesetril, T. Vojnar, D. Antos, eds., Mathematical and Engineering Methods in Computer Science, Springer, 2013.
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A. Kucera, T.A. Henzinger, J. Nesetril, T. Vojnar, D. Antos, eds., Mathematical and Engineering Methods in Computer Science, Springer, 2013.
2013 | Conference Paper | IST-REx-ID: 2886 |
Controllable-choice message sequence graphs
M. Chmelik, V. Řehák, 7721 (2013) 118–130.
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M. Chmelik, V. Řehák, 7721 (2013) 118–130.
2013 | Journal Article | IST-REx-ID: 2887 |
Genotypic recognition and spatial responses by rice roots
S. Fang, R. Clark, Y. Zheng, A. Iyer Pascuzzi, J. Weitz, L. Kochian, H. Edelsbrunner, H. Liao, P. Benfey, PNAS 110 (2013) 2670–2675.
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S. Fang, R. Clark, Y. Zheng, A. Iyer Pascuzzi, J. Weitz, L. Kochian, H. Edelsbrunner, H. Liao, P. Benfey, PNAS 110 (2013) 2670–2675.
2013 | Conference Paper | IST-REx-ID: 2901 |
Computing the M most probable modes of a graphical model
C. Chen, V. Kolmogorov, Z. Yan, D. Metaxas, C. Lampert, in:, JMLR, 2013, pp. 161–169.
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C. Chen, V. Kolmogorov, Z. Yan, D. Metaxas, C. Lampert, in:, JMLR, 2013, pp. 161–169.
2013 | Conference Paper | IST-REx-ID: 2906 |
3D kinetic alpha complexes and their implementation
M. Kerber, H. Edelsbrunner, in:, 2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments, Society of Industrial and Applied Mathematics, 2013, pp. 70–77.
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M. Kerber, H. Edelsbrunner, in:, 2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments, Society of Industrial and Applied Mathematics, 2013, pp. 70–77.
2013 | Book Chapter | IST-REx-ID: 2907 |
Recombination and sex
N.H. Barton, in:, The Princeton Guide to Evolution, Princeton University Press, 2013, pp. 328–333.
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N.H. Barton, in:, The Princeton Guide to Evolution, Princeton University Press, 2013, pp. 328–333.
2013 | Journal Article | IST-REx-ID: 2908 |
Does hybridisation influence speciation?
N.H. Barton, Journal of Evolutionary Biology 26 (2013) 267–269.
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N.H. Barton, Journal of Evolutionary Biology 26 (2013) 267–269.
2013 | Journal Article | IST-REx-ID: 2909 |
Modelling evolution in a spatial continuum
N.H. Barton, A. Etheridge, A. Véber, Journal of Statistical Mechanics Theory and Experiment 2013 (2013).
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N.H. Barton, A. Etheridge, A. Véber, Journal of Statistical Mechanics Theory and Experiment 2013 (2013).
2013 | Journal Article | IST-REx-ID: 2910 |
Coalescent simulation in continuous space
J. Kelleher, N.H. Barton, A. Etheridge, Bioinformatics 29 (2013) 955–956.
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J. Kelleher, N.H. Barton, A. Etheridge, Bioinformatics 29 (2013) 955–956.
2013 | Journal Article | IST-REx-ID: 2913 |
Retinal metric: a stimulus distance measure derived from population neural responses
G. Tkačik, E. Granot Atedgi, R. Segev, E. Schneidman, Physical Review Letters 110 (2013).
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G. Tkačik, E. Granot Atedgi, R. Segev, E. Schneidman, Physical Review Letters 110 (2013).
2013 | Journal Article | IST-REx-ID: 2914 |
Statistical thermodynamics of natural images
G. Stephens, T. Mora, G. Tkačik, W. Bialek, Physical Review Letters 110 (2013).
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G. Stephens, T. Mora, G. Tkačik, W. Bialek, Physical Review Letters 110 (2013).
2013 | Journal Article | IST-REx-ID: 2918
Anthrax toxin receptor 2a controls mitotic spindle positioning
I. Castanon, L. Abrami, L. Holtzer, C.-P.J. Heisenberg, F. Van Der Goot, M. González Gaitán, Nature Cell Biology 15 (2013) 28–39.
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I. Castanon, L. Abrami, L. Holtzer, C.-P.J. Heisenberg, F. Van Der Goot, M. González Gaitán, Nature Cell Biology 15 (2013) 28–39.
2013 | Journal Article | IST-REx-ID: 2919 |
SCF^TIR1 AFB-auxin signalling regulates PIN vacuolar trafficking and auxin fluxes during root gravitropism
P. Baster, S. Robert, J. Kleine Vehn, S. Vanneste, U. Kania, W. Grunewald, B. De Rybel, T. Beeckman, J. Friml, EMBO Journal 32 (2013) 260–274.
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P. Baster, S. Robert, J. Kleine Vehn, S. Vanneste, U. Kania, W. Grunewald, B. De Rybel, T. Beeckman, J. Friml, EMBO Journal 32 (2013) 260–274.
2013 | Journal Article | IST-REx-ID: 2920 |
Neurulation coordinating cell polarisation and lumen formation
J. Compagnon, C.-P.J. Heisenberg, EMBO Journal 32 (2013) 1–3.
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J. Compagnon, C.-P.J. Heisenberg, EMBO Journal 32 (2013) 1–3.
2013 | Journal Article | IST-REx-ID: 2926
Ants disinfect fungus-exposed brood by oral uptake and spread of their poison
S. Tragust, B. Mitteregger, V. Barone, M. Konrad, L.V. Ugelvig, S. Cremer, Current Biology 23 (2013) 76–82.
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S. Tragust, B. Mitteregger, V. Barone, M. Konrad, L.V. Ugelvig, S. Cremer, Current Biology 23 (2013) 76–82.
2013 | Journal Article | IST-REx-ID: 2939
An output sensitive algorithm for persistent homology
C. Chen, M. Kerber, Computational Geometry: Theory and Applications 46 (2013) 435–447.
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C. Chen, M. Kerber, Computational Geometry: Theory and Applications 46 (2013) 435–447.
2013 | Conference Paper | IST-REx-ID: 2940 |
A counterexample to the chain rule for conditional HILL entropy, and what deniable encryption has to do with it
S. Krenn, K.Z. Pietrzak, A. Wadia, in:, A. Sahai (Ed.), Springer, 2013, pp. 23–39.
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S. Krenn, K.Z. Pietrzak, A. Wadia, in:, A. Sahai (Ed.), Springer, 2013, pp. 23–39.
2013 | Journal Article | IST-REx-ID: 2944
Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates.
S. Aeschbacher, A. Futschik, M. Beaumont, Molecular Ecology 22 (2013) 987–1002.
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S. Aeschbacher, A. Futschik, M. Beaumont, Molecular Ecology 22 (2013) 987–1002.
2013 | Conference Paper | IST-REx-ID: 2948 |
Beyond dataset bias: Multi-task unaligned shared knowledge transfer
T. Tommasi, N. Quadrianto, B. Caputo, C. Lampert, 7724 (2013) 1–15.
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T. Tommasi, N. Quadrianto, B. Caputo, C. Lampert, 7724 (2013) 1–15.
2013 | Journal Article | IST-REx-ID: 827 |
Cytokinin cross talking during biotic and abiotic stress responses
J. O’Brien, E. Benková, Frontiers in Plant Science 4 (2013).
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J. O’Brien, E. Benková, Frontiers in Plant Science 4 (2013).
2013 | Journal Article | IST-REx-ID: 828 |
Systems approaches to study root architecture dynamics
C. Cuesta, K.T. Wabnik, E. Benková, Frontiers in Plant Science 4 (2013).
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C. Cuesta, K.T. Wabnik, E. Benková, Frontiers in Plant Science 4 (2013).
2013 | Conference Paper | IST-REx-ID: 2000 |
TTP: Tool for tumor progression
J. Reiter, I. Božić, K. Chatterjee, M. Nowak, in:, Proceedings of 25th Int. Conf. on Computer Aided Verification, Springer, 2013, pp. 101–106.
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J. Reiter, I. Božić, K. Chatterjee, M. Nowak, in:, Proceedings of 25th Int. Conf. on Computer Aided Verification, Springer, 2013, pp. 101–106.
2013 | Journal Article | IST-REx-ID: 2009 |
Privacy-preserving data sharing for genome-wide association studies
C. Uhler, A. Slavkovic, S. Fienberg, Journal of Privacy and Confidentiality 5 (2013) 137–166.
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C. Uhler, A. Slavkovic, S. Fienberg, Journal of Privacy and Confidentiality 5 (2013) 137–166.
2013 | Journal Article | IST-REx-ID: 2010 |
Geometry of the faithfulness assumption in causal inference
C. Uhler, G. Raskutti, P. Bühlmann, B. Yu, The Annals of Statistics 41 (2013) 436–463.
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C. Uhler, G. Raskutti, P. Bühlmann, B. Yu, The Annals of Statistics 41 (2013) 436–463.
2013 | Conference Paper | IST-REx-ID: 2181 |
Quantitative relaxation of concurrent data structures
T.A. Henzinger, C. Kirsch, H. Payer, A. Sezgin, A. Sokolova, in:, Proceedings of the 40th Annual ACM SIGPLAN-SIGACT Symposium on Principles of Programming Language, ACM, 2013, pp. 317–328.
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T.A. Henzinger, C. Kirsch, H. Payer, A. Sezgin, A. Sokolova, in:, Proceedings of the 40th Annual ACM SIGPLAN-SIGACT Symposium on Principles of Programming Language, ACM, 2013, pp. 317–328.
2013 | Conference Paper | IST-REx-ID: 2182
Quantitative abstraction refinement
P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Proceedings of the 40th Annual ACM SIGPLAN-SIGACT Symposium on Principles of Programming Language, ACM, 2013, pp. 115–128.
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P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Proceedings of the 40th Annual ACM SIGPLAN-SIGACT Symposium on Principles of Programming Language, ACM, 2013, pp. 115–128.
2013 | Conference Paper | IST-REx-ID: 2209
Recognizing straight skeletons and Voronoi diagrams and reconstructing their input
T. Biedl, M. Held, S. Huber, in:, IEEE, 2013, pp. 37–46.
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T. Biedl, M. Held, S. Huber, in:, IEEE, 2013, pp. 37–46.
2013 | Conference Paper | IST-REx-ID: 2210 |
Reconstructing polygons from embedded straight skeletons
T. Biedl, M. Held, S. Huber, in:, 29th European Workshop on Computational Geometry, TU Braunschweig, 2013, pp. 95–98.
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T. Biedl, M. Held, S. Huber, in:, 29th European Workshop on Computational Geometry, TU Braunschweig, 2013, pp. 95–98.
2013 | Conference Paper | IST-REx-ID: 2237 |
Tree interpolation in Vampire
R. Blanc, A. Gupta, L. Kovács, B. Kragl, 8312 (2013) 173–181.
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R. Blanc, A. Gupta, L. Kovács, B. Kragl, 8312 (2013) 173–181.
2013 | Conference Paper | IST-REx-ID: 2238
Multi-objective discounted reward verification in graphs and MDPs
K. Chatterjee, V. Forejt, D. Wojtczak, 8312 (2013) 228–242.
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K. Chatterjee, V. Forejt, D. Wojtczak, 8312 (2013) 228–242.
2013 | Conference Paper | IST-REx-ID: 2243 |
Elementary modal logics over transitive structures
J. Michaliszyn, J. Otop, 23 (2013) 563–577.
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J. Michaliszyn, J. Otop, 23 (2013) 563–577.
2013 | Conference Paper | IST-REx-ID: 2244 |
Untangling two systems of noncrossing curves
J. Matoušek, E. Sedgwick, M. Tancer, U. Wagner, 8242 (2013) 472–483.
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| arXiv
J. Matoušek, E. Sedgwick, M. Tancer, U. Wagner, 8242 (2013) 472–483.
2013 | Journal Article | IST-REx-ID: 2247 |
Forgiver triumphs in alternating prisoner's dilemma
B. Zagorsky, J. Reiter, K. Chatterjee, M. Nowak, PLoS One 8 (2013).
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B. Zagorsky, J. Reiter, K. Chatterjee, M. Nowak, PLoS One 8 (2013).