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2902 Publications

2013 | Journal Article | IST-REx-ID: 2910 | OA
Coalescent simulation in continuous space
J. Kelleher, N.H. Barton, A. Etheridge, Bioinformatics 29 (2013) 955–956.
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2013 | Journal Article | IST-REx-ID: 2913 | OA
Retinal metric: a stimulus distance measure derived from population neural responses
G. Tkacik, E. Granot Atedgi, R. Segev, E. Schneidman, Physical Review Letters 110 (2013).
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2013 | Journal Article | IST-REx-ID: 2914 | OA
Statistical thermodynamics of natural images
G. Stephens, T. Mora, G. Tkačik, W. Bialek, Physical Review Letters 110 (2013).
View | Files available | DOI | Download Published Version (ext.) | arXiv
 
2013 | Journal Article | IST-REx-ID: 2918
Anthrax toxin receptor 2a controls mitotic spindle positioning
I. Castanon, L. Abrami, L. Holtzer, C.-P.J. Heisenberg, F. Van Der Goot, M. González Gaitán, Nature Cell Biology 15 (2013) 28–39.
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2013 | Journal Article | IST-REx-ID: 2919 | OA
SCF^TIR1 AFB-auxin signalling regulates PIN vacuolar trafficking and auxin fluxes during root gravitropism
P. Baster, S. Robert, J. Kleine Vehn, S. Vanneste, U. Kania, W. Grunewald, B. De Rybel, T. Beeckman, J. Friml, EMBO Journal 32 (2013) 260–274.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2013 | Journal Article | IST-REx-ID: 2920 | OA
Neurulation coordinating cell polarisation and lumen formation
J. Compagnon, C.-P.J. Heisenberg, EMBO Journal 32 (2013) 1–3.
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2013 | Journal Article | IST-REx-ID: 2926
Ants disinfect fungus-exposed brood by oral uptake and spread of their poison
S. Tragust, B. Mitteregger, V. Barone, M. Konrad, L.V. Ugelvig, S. Cremer, Current Biology 23 (2013) 76–82.
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2013 | Journal Article | IST-REx-ID: 2939
An output sensitive algorithm for persistent homology
C. Chen, M. Kerber, Computational Geometry: Theory and Applications 46 (2013) 435–447.
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2013 | Conference Paper | IST-REx-ID: 2940 | OA
A counterexample to the chain rule for conditional HILL entropy, and what deniable encryption has to do with it
S. Krenn, K.Z. Pietrzak, A. Wadia, in:, A. Sahai (Ed.), Springer, 2013, pp. 23–39.
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2013 | Journal Article | IST-REx-ID: 2944
Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates.
S. Aeschbacher, A. Futschik, M. Beaumont, Molecular Ecology 22 (2013) 987–1002.
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2013 | Conference Paper | IST-REx-ID: 2948 | OA
Beyond dataset bias: Multi-task unaligned shared knowledge transfer
T. Tommasi, N. Quadrianto, B. Caputo, C. Lampert, 7724 (2013) 1–15.
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2013 | Journal Article | IST-REx-ID: 3116
Code aware resource management
K. Chatterjee, L. De Alfaro, M. Faella, R. Majumdar, V. Raman, Formal Methods in System Design 42 (2013) 142–174.
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2013 | Technical Report | IST-REx-ID: 6440 | OA
Replacing competition with cooperation to achieve scalable lock-free FIFO queues
T.A. Henzinger, H. Payer, A. Sezgin, Replacing Competition with Cooperation to Achieve Scalable Lock-Free FIFO Queues , IST Austria, 2013.
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2013 | Journal Article | IST-REx-ID: 827 | OA
Cytokinin cross talking during biotic and abiotic stress responses
J. O’Brien, E. Benková, Frontiers in Plant Science 4 (2013).
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2013 | Journal Article | IST-REx-ID: 828 | OA
Systems approaches to study root architecture dynamics
C. Cuesta, K.T. Wabnik, E. Benková, Frontiers in Plant Science 4 (2013).
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2013 | Conference Paper | IST-REx-ID: 1374 | OA
Infinite-state games with finitary conditions
K. Chatterjee, N. Fijalkow, in:, 22nd EACSL Annual Conference on Computer Science Logic, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp. 181–196.
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2013 | Conference Paper | IST-REx-ID: 1376
Distributed synthesis for LTL fragments
K. Chatterjee, T.A. Henzinger, J. Otop, A. Pavlogiannis, in:, 13th International Conference on Formal Methods in Computer-Aided Design, IEEE, 2013, pp. 18–25.
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2013 | Conference Paper | IST-REx-ID: 1385 | OA
Synthesizing multiple boolean functions using interpolation on a single proof
G. Hofferek, A. Gupta, B. Könighofer, J. Jiang, R. Bloem, in:, 2013 Formal Methods in Computer-Aided Design, IEEE, 2013, pp. 77–84.
View | DOI | Download Preprint (ext.) | arXiv
 
2013 | Conference Paper | IST-REx-ID: 1387 | OA
Nondeterminism in the presence of a diverse or unknown future
U. Boker, D. Kuperberg, O. Kupferman, M. Skrzypczak, 7966 (2013) 89–100.
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2013 | Thesis | IST-REx-ID: 1405
Analysis of dynamic message passing programs
D. Zufferey, Analysis of Dynamic Message Passing Programs, IST Austria, 2013.
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2013 | Thesis | IST-REx-ID: 1406
Mechanics of zebrafish epiboly: Tension-oriented cell divisions limit anisotropic tissue tension in epithelial spreading
P. Campinho, Mechanics of Zebrafish Epiboly: Tension-Oriented Cell Divisions Limit Anisotropic Tissue Tension in Epithelial Spreading, IST Austria, 2013.
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2013 | Journal Article | IST-REx-ID: 3261 | OA
Positional information, in bits
J. Dubuis, G. Tkačik, E. Wieschaus, T. Gregor, W. Bialek, PNAS 110 (2013) 16301–16308.
View | Files available | DOI | PubMed | Europe PMC
 
2013 | Encyclopedia Article | IST-REx-ID: 3321
Kernel based learning
N. Quadrianto, C. Lampert, in:, W. Dubitzky, O. Wolkenhauer, K. Cho, H. Yokota (Eds.), Encyclopedia of Systems Biology, Springer, 2013, pp. 1069–1069.
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2012 | Conference Paper | IST-REx-ID: 2048 | OA
Practical leakage-resilient symmetric cryptography
S. Faust, K.Z. Pietrzak, J. Schipper, in:, Conference Proceedings CHES 2012, Springer, 2012, pp. 213–232.
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2012 | Conference Paper | IST-REx-ID: 2049 | OA
Lapin: An efficient authentication protocol based on ring-LPN
S. Heyse, E. Kiltz, V. Lyubashevsky, C. Paar, K.Z. Pietrzak, in:, Conference Proceedings FSE 2012, Springer, 2012, pp. 346–365.
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2012 | Journal Article | IST-REx-ID: 2263 | OA
A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors
H. Liang, S. Hippenmeyer, H. Ghashghaei, Biology Open 1 (2012) 1200–1203.
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2012 | Journal Article | IST-REx-ID: 2302
The propagation approach for computing biochemical reaction networks
T.A. Henzinger, M. Mateescu, IEEE ACM Transactions on Computational Biology and Bioinformatics 10 (2012) 310–322.
View | DOI | PubMed | Europe PMC
 
2012 | Journal Article | IST-REx-ID: 2318 | OA
Absence of bound states implies non-negativity of the scattering length
R. Seiringer, Journal of Spectral Theory 2 (2012) 321–328.
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2012 | Journal Article | IST-REx-ID: 2411 | OA
A consistent phylogenetic backbone for the fungi
I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.
View | Files available | DOI
 
2012 | Journal Article | IST-REx-ID: 493 | OA
Review of the BCI competition IV
M. Tangermann, K. Müller, A. Aertsen, N. Birbaumer, C. Braun, C. Brunner, R. Leeb, C. Mehring, K. Miller, G. Müller Putz, G. Nolte, G. Pfurtscheller, H. Preissl, G. Schalk, A. Schlögl, C. Vidaurre, S. Waldert, B. Blankertz, Frontiers in Neuroscience 6 (2012).
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2012 | Journal Article | IST-REx-ID: 494
Translating to Co-Büchi made tight, unified, and useful
U. Boker, O. Kupferman, ACM Transactions on Computational Logic (TOCL) 13 (2012).
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2012 | Conference Paper | IST-REx-ID: 495 | OA
A Myhill Nerode theorem for automata with advice
A. Kruckman, S. Rubin, J. Sheridan, B. Zax, in:, Proceedings GandALF 2012, Open Publishing Association, 2012, pp. 238–246.
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2012 | Conference Paper | IST-REx-ID: 496 | OA
Interpretations in trees with countably many branches
A. Rabinovich, S. Rubin, in:, IEEE, 2012.
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2012 | Conference Paper | IST-REx-ID: 497 | OA
Faster algorithms for alternating refinement relations
K. Chatterjee, S. Chaubal, P. Kamath, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 167–182.
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2012 | Journal Article | IST-REx-ID: 498 | OA
Predicting local adaptation in fragmented plant populations: Implications for restoration genetics
M. Pickup, D. Field, D. Rowell, A. Young, Evolutionary Applications 5 (2012) 913–924.
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2012 | Journal Article | IST-REx-ID: 506 | OA
Cell migration: Fibroblasts find a new way to get ahead
M.K. Sixt, Journal of Cell Biology 197 (2012) 347–349.
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2012 | Technical Report | IST-REx-ID: 5377 | OA
Mean-payoff pushdown games
K. Chatterjee, Y. Velner, Mean-Payoff Pushdown Games, IST Austria, 2012.
View | Files available | DOI
 
2012 | Technical Report | IST-REx-ID: 5378 | OA
Faster algorithms for alternating refinement relations
K. Chatterjee, S. Chaubal, P. Kamath, Faster Algorithms for Alternating Refinement Relations, IST Austria, 2012.
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2012 | Technical Report | IST-REx-ID: 5396 | OA
Approximating marginals using discrete energy minimization
F. Korc, V. Kolmogorov, C. Lampert, Approximating Marginals Using Discrete Energy Minimization, IST Austria, 2012.
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2012 | Report | IST-REx-ID: 5398 | OA
Actual state of research data @ ISTAustria
J. Porsche, Actual State of Research Data @ ISTAustria, IST Austria, 2012.
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2012 | Book Chapter | IST-REx-ID: 5745 | OA
Improved Single Pass Algorithms for Resolution Proof Reduction
A. Gupta, in:, Automated Technology for Verification and Analysis, Springer Berlin Heidelberg, Berlin, Heidelberg, 2012, pp. 107–121.
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2012 | Conference Paper | IST-REx-ID: 2715 | OA
Average case analysis of the classical algorithm for Markov decision processes with Büchi objectives
K. Chatterjee, M. Joglekar, N. Shah, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 461–473.
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2012 | Conference Paper | IST-REx-ID: 2825
Dynamic pruning of factor graphs for maximum marginal prediction
C. Lampert, in:, Neural Information Processing Systems, 2012, pp. 82–90.
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2012 | Journal Article | IST-REx-ID: 2848 | OA
Evolutionary game dynamics in populations with different learners
K. Chatterjee, D. Zufferey, M. Nowak, Journal of Theoretical Biology 301 (2012) 161–173.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2012 | Journal Article | IST-REx-ID: 2849 | OA
On the configuration space of Steiner minimal trees
H. Edelsbrunner, N. Strelkova, Russian Mathematical Surveys 67 (2012) 1167–1168.
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2012 | Conference Paper | IST-REx-ID: 2888
Quantitative reactive models
T.A. Henzinger, in:, Conference Proceedings MODELS 2012, Springer, 2012, pp. 1–2.
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2012 | Conference Paper | IST-REx-ID: 2890
Synthesis from incompatible specifications
P. Cerny, S. Gopi, T.A. Henzinger, A. Radhakrishna, N. Totla, in:, Proceedings of the Tenth ACM International Conference on Embedded Software, ACM, 2012, pp. 53–62.
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2012 | Conference Paper | IST-REx-ID: 2891 | OA
Approximate determinization of quantitative automata
U. Boker, T.A. Henzinger, in:, Leibniz International Proceedings in Informatics, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 362–373.
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2012 | Journal Article | IST-REx-ID: 2902
Fractal and computational geometry for generalizing cartographic objects
H. Edelsbrunner, O. Musin, A. Ukhalov, O. Yakimova, V. Alexeev, V. Bogaevskaya, A. Gorohov, M. Preobrazhenskaya, Modeling and Analysis of Information Systems 19 (2012) 152–160.
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2012 | Conference Paper | IST-REx-ID: 2903 | OA
The adaptive topology of a digital image
H. Edelsbrunner, O. Symonova, in:, IEEE, 2012, pp. 41–48.
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