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2782 Publications

2013 | Journal Article | IST-REx-ID: 2926
Tragust, Simon, Barbara Mitteregger, Vanessa Barone, Matthias Konrad, Line V Ugelvig, and Sylvia Cremer. “Ants Disinfect Fungus-Exposed Brood by Oral Uptake and Spread of Their Poison.” Current Biology 23, no. 1 (2013): 76–82. https://doi.org/10.1016/j.cub.2012.11.034.
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2013 | Journal Article | IST-REx-ID: 2918
Castanon, Irinka, Laurence Abrami, Laurent Holtzer, Carl-Philipp J Heisenberg, Françoise Van Der Goot, and Marcos González Gaitán. “Anthrax Toxin Receptor 2a Controls Mitotic Spindle Positioning.” Nature Cell Biology 15, no. 1 (2013): 28–39. https://doi.org/10.1038/ncb2632.
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2013 | Journal Article | IST-REx-ID: 2919 | OA
Baster, Pawel, Stéphanie Robert, Jürgen Kleine Vehn, Steffen Vanneste, Urszula Kania, Wim Grunewald, Bert De Rybel, Tom Beeckman, and Jirí Friml. “SCF^TIR1 AFB-Auxin Signalling Regulates PIN Vacuolar Trafficking and Auxin Fluxes during Root Gravitropism.” EMBO Journal 32, no. 2 (2013): 260–74. https://doi.org/10.1038/emboj.2012.310.
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2013 | Journal Article | IST-REx-ID: 2920 | OA
Compagnon, Julien, and Carl-Philipp J Heisenberg. “Neurulation Coordinating Cell Polarisation and Lumen Formation.” EMBO Journal 32, no. 1 (2013): 1–3. https://doi.org/10.1038/emboj.2012.325.
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2013 | Journal Article | IST-REx-ID: 2858 | OA
Reiter, Johannes, Ivana Božić, Benjamin Allen, Krishnendu Chatterjee, and Martin Nowak. “The Effect of One Additional Driver Mutation on Tumor Progression.” Evolutionary Applications 6, no. 1 (2013): 34–45. https://doi.org/10.1111/eva.12020.
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2013 | Journal Article | IST-REx-ID: 2859 | OA
Bendich, Paul, Herbert Edelsbrunner, Dmitriy Morozov, and Amit Patel. “Homology and Robustness of Level and Interlevel Sets.” Homology, Homotopy and Applications 15, no. 1 (2013): 51–72. https://doi.org/10.4310/HHA.2013.v15.n1.a3.
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2013 | Journal Article | IST-REx-ID: 3116
Chatterjee, Krishnendu, Luca De Alfaro, Marco Faella, Ritankar Majumdar, and Vishwanath Raman. “Code Aware Resource Management.” Formal Methods in System Design 42, no. 2 (2013): 142–74. https://doi.org/10.1007/s10703-012-0170-4.
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2013 | Journal Article | IST-REx-ID: 2815
Edelsbrunner, Herbert, Brittany Terese Fasy, and Günter Rote. “Add Isotropic Gaussian Kernels at Own Risk: More and More Resilient Modes in Higher Dimensions.” Discrete & Computational Geometry 49, no. 4 (2013): 797–822. https://doi.org/10.1007/s00454-013-9517-x.
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2013 | Conference Paper | IST-REx-ID: 1387 | OA
Boker, Udi, Denis Kuperberg, Orna Kupferman, and Michał Skrzypczak. “Nondeterminism in the Presence of a Diverse or Unknown Future.” Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-39212-2_11.
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2013 | Conference Paper | IST-REx-ID: 2237 | OA
Blanc, Régis, Ashutosh Gupta, Laura Kovács, and Bernhard Kragl. “Tree Interpolation in Vampire.” Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-45221-5_13.
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2013 | Conference Paper | IST-REx-ID: 2238
Chatterjee, Krishnendu, Vojtěch Forejt, and Dominik Wojtczak. “Multi-Objective Discounted Reward Verification in Graphs and MDPs.” Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-45221-5_17.
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2013 | Conference Paper | IST-REx-ID: 2243 | OA
Michaliszyn, Jakub, and Jan Otop. “Elementary Modal Logics over Transitive Structures.” Leibniz International Proceedings in Informatics. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013. https://doi.org/10.4230/LIPIcs.CSL.2013.563.
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2013 | Journal Article | IST-REx-ID: 2247 | OA
Zagorsky, Benjamin, Johannes Reiter, Krishnendu Chatterjee, and Martin Nowak. “Forgiver Triumphs in Alternating Prisoner’s Dilemma .” PLoS One 8, no. 12 (2013). https://doi.org/10.1371/journal.pone.0080814.
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2013 | Conference Paper | IST-REx-ID: 2244 | OA
Matoušek, Jiří, Eric Sedgwick, Martin Tancer, and Uli Wagner. “Untangling Two Systems of Noncrossing Curves.” Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-319-03841-4_41.
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2013 | Conference Paper | IST-REx-ID: 2445 | OA
Cerny, Pavol, Thomas A Henzinger, Arjun Radhakrishna, Leonid Ryzhyk, and Thorsten Tarrach. “Efficient Synthesis for Concurrency by Semantics-Preserving Transformations,” 8044:951–67. Springer, 2013. https://doi.org/10.1007/978-3-642-39799-8_68.
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2013 | Conference Paper | IST-REx-ID: 2446 | OA
Chatterjee, Krishnendu, Andreas Gaiser, and Jan Kretinsky. “Automata with Generalized Rabin Pairs for Probabilistic Model Checking and LTL Synthesis.” Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-39799-8_37.
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2013 | Conference Paper | IST-REx-ID: 2447 | OA
Piskac, Ruzica, Thomas Wies, and Damien Zufferey. “Automating Separation Logic Using SMT.” Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-39799-8_54.
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2013 | Journal Article | IST-REx-ID: 2448 | OA
Remy, Estelle, Pawel Baster, Jirí Friml, and Paula Duque. “ZIFL1.1 Transporter Modulates Polar Auxin Transport by Stabilizing Membrane Abundance of Multiple PINs in Arabidopsis Root Tip.” Plant Signaling & Behavior 8, no. 10 (2013). https://doi.org/10.4161/psb.25688.
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2013 | Journal Article | IST-REx-ID: 2449
Nodzyński, Tomasz, Murguel Feraru, Sibylle Hirsch, Riet De Rycke, Claudiu Nicuales, Jelle Van Leene, Geert De Jaeger, Steffen Vanneste, and Jirí Friml. “Retromer Subunits VPS35A and VPS29 Mediate Prevacuolar Compartment (PVC) Function in Arabidopsis.” Molecular Plant 6, no. 6 (2013): 1849–62. https://doi.org/10.1093/mp/sst044.
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2013 | Journal Article | IST-REx-ID: 2466 | OA
Ando, Ryoichi, Nils Thuerey, and Christopher J Wojtan. “Highly Adaptive Liquid Simulations on Tetrahedral Meshes.” ACM Transactions on Graphics 32, no. 4 (2013). https://doi.org/10.1145/2461912.2461982.
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2013 | Journal Article | IST-REx-ID: 2467 | OA
Bernstein, Gilbert, and Christopher J Wojtan. “Putting Holes in Holey Geometry: Topology Change for Arbitrary Surfaces.” ACM Transactions on Graphics 32, no. 4 (2013). https://doi.org/10.1145/2461912.2462027.
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2013 | Journal Article | IST-REx-ID: 2468 | OA
Bojsen-Hansen, Morten, and Christopher J Wojtan. “Liquid Surface Tracking with Error Compensation.” ACM Transactions on Graphics 32, no. 4 (2013). https://doi.org/10.1145/2461912.2461991.
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2013 | Journal Article | IST-REx-ID: 2469 | OA
Maître, Jean-Léon, and Carl-Philipp J Heisenberg. “Three Functions of Cadherins in Cell Adhesion.” Current Biology 23, no. 14 (2013): R626–33. https://doi.org/10.1016/j.cub.2013.06.019.
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2013 | Journal Article | IST-REx-ID: 2470 | OA
Čovanová, Milada, Michael Sauer, Jan Rychtář, Jiří Friml, Jan Petrášek, and Eva Zažímalová. “Overexpression of the Auxin Binding PROTEIN1 Modulates PIN-Dependent Auxin Transport in Tobacco Cells.” PLoS One 8, no. 7 (2013). https://doi.org/10.1371/journal.pone.0070050.
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2013 | Journal Article | IST-REx-ID: 2471 | OA
Sanchez-Romero, Inmaculada, Antonio Ariza, Keith Wilson, Michael Skjøt, Jesper Vind, Leonardo De Maria, Lars Skov, and Jose Sánchez Ruiz. “Mechanism of Protein Kinetic Stabilization by Engineered Disulfide Crosslinks.” PLoS One 8, no. 7 (2013). https://doi.org/10.1371/journal.pone.0070013.
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2013 | Journal Article | IST-REx-ID: 2472 | OA
Cazzonelli, Christopher, Marleen Vanstraelen, Sibu Simon, Kuide Yin, Ashley Carron Arthur, Nazia Nisar, Gauri Tarle, et al. “Role of the Arabidopsis PIN6 Auxin Transporter in Auxin Homeostasis and Auxin-Mediated Development.” PLoS One 8, no. 7 (2013). https://doi.org/10.1371/journal.pone.0070069.
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2013 | Journal Article | IST-REx-ID: 2473 | OA
Barton, Nicholas H, Alison Etheridge, Jerome Kelleher, and Amandine Véber. “Genetic Hitch-Hiking in Spatially Extended Populations.” Theoretical Population Biology 87, no. 8 (2013): 75–89. https://doi.org/10.1016/j.tpb.2012.12.001.
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2013 | Journal Article | IST-REx-ID: 2516
Lampert, Christoph, Hannes Nickisch, and Stefan Harmeling. “Attribute-Based Classification for Zero-Shot Learning of Object Categories.” IEEE Transactions on Pattern Analysis and Machine Intelligence 36, no. 3 (2013): 453–65. https://doi.org/10.1109/TPAMI.2013.140.
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2013 | Conference Paper | IST-REx-ID: 2517 | OA
Almagor, Shaull, Udi Boker, and Orna Kupferman. “Formalizing and Reasoning about Quality.” Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-39212-2_3.
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2013 | Journal Article | IST-REx-ID: 2410 | OA
Fernandes Redondo, Rodrigo A, Anne Kupczok, Gertraud Stift, and Jonathan P Bollback. “Complete Genome Sequence of the Novel Phage MG-B1 Infecting Bacillus Weihenstephanensis.” Genome Announcements 1, no. 3 (2013). https://doi.org/10.1128/genomeA.00216-13.
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2013 | Journal Article | IST-REx-ID: 2412 | OA
Kupczok, Anne, and Jonathan P Bollback. “Probabilistic Models for CRISPR Spacer Content Evolution .” BMC Evolutionary Biology 13, no. 1 (2013): 54–54. https://doi.org/10.1186/1471-2148-13-54.
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2013 | Book Chapter | IST-REx-ID: 2413
Valderrama, Mario, Vicente Botella Soler, and Michel Le Van Quyen. “Neuronal Oscillations Scale up and Scale down the Brain Dynamics .” In Multiscale Analysis and Nonlinear Dynamics: From Genes to the Brain, edited by Misha Meyer and Z. Pesenson. Wiley-VCH, 2013. https://doi.org/10.1002/9783527671632.ch08.
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2013 | Journal Article | IST-REx-ID: 2443
Simon, Sibu, Martin Kubeš, Pawel Baster, Stéphanie Robert, Petre Dobrev, Jirí Friml, Jan Petrášek, and Eva Zažímalová. “Defining the Selectivity of Processes along the Auxin Response Chain: A Study Using Auxin Analogues.” New Phytologist 200, no. 4 (2013): 1034–48. https://doi.org/10.1111/nph.12437.
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2013 | Conference Paper | IST-REx-ID: 2444 | OA
Chatterjee, Krishnendu, and Jakub Ła̧Cki. “Faster Algorithms for Markov Decision Processes with Low Treewidth.” Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-39799-8_36.
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2013 | Journal Article | IST-REx-ID: 2300 | OA
Giuliani, Alessandro, Élliott Lieb, and Robert Seiringer. “Realization of Stripes and Slabs in Two and Three Dimensions.” Physical Review B 88, no. 6 (2013). https://doi.org/10.1103/PhysRevB.88.064401.
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2013 | Conference Paper | IST-REx-ID: 2301
Desai, Ankush, Vivek Gupta, Ethan Jackson, Shaz Qadeer, Sriram Rajamani, and Damien Zufferey. “P: Safe Asynchronous Event-Driven Programming.” In Proceedings of the 34th ACM SIGPLAN Conference on Programming Language Design and Implementation, 321–31. ACM, 2013. https://doi.org/10.1145/2491956.2462184.
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2013 | Journal Article | IST-REx-ID: 2303
Hippenmeyer, Simon. “Dissection of Gene Function at Clonal Level Using Mosaic Analysis with Double Markers.” Frontiers in Biology 8, no. 6 (2013): 557–68. https://doi.org/10.1007/s11515-013-1279-6.
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2013 | Journal Article | IST-REx-ID: 2304
Pausinger, Florian. “Van Der Corput Sequences and Linear Permutations.” Electronic Notes in Discrete Mathematics 43 (2013): 43–50. https://doi.org/10.1016/j.endm.2013.07.008.
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2013 | Conference Paper | IST-REx-ID: 2305 | OA
Brázdil, Tomáš, Krishnendu Chatterjee, Vojtěch Forejt, and Antonín Kučera. “Trading Performance for Stability in Markov Decision Processes.” In 28th Annual ACM/IEEE Symposium, 331–40. IEEE, 2013. https://doi.org/10.1109/LICS.2013.39.
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2013 | Conference Paper | IST-REx-ID: 2328 | OA
Henzinger, Thomas A, Ali Sezgin, and Viktor Vafeiadis. “Aspect-Oriented Linearizability Proofs.” Lecture Notes in Computer Science. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013. https://doi.org/10.1007/978-3-642-40184-8_18.
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2013 | Journal Article | IST-REx-ID: 2821 | OA
Remy, Estelle, Tânia Cabrito, Pawel Baster, Rita Batista, Miguel Teixeira, Jirí Friml, Isabel Sá Correia, and Paula Duque. “A Major Facilitator Superfamily Transporter Plays a Dual Role in Polar Auxin Transport and Drought Stress Tolerance in Arabidopsis.” Plant Cell 25, no. 3 (2013): 901–26. https://doi.org/10.1105/tpc.113.110353.
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2013 | Journal Article | IST-REx-ID: 2822 | OA
Topp, Christopher, Anjali Iyer Pascuzzi, Jill Anderson, Cheng Lee, Paul Zurek, Olga Symonova, Ying Zheng, et al. “3D Phenotyping and Quantitative Trait Locus Mapping Identify Core Regions of the Rice Genome Controlling Root Architecture.” PNAS 110, no. 18 (2013): E1695–1704. https://doi.org/10.1073/pnas.1304354110.
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2013 | Journal Article | IST-REx-ID: 2823
Pickup, Melinda, Susie Wilson, David Freudenberger, Nick Nicholls, Lori Gould, Sarah Hnatiuk, and Jeni Delandre. “Post-Fire Recovery of Revegetated Woodland Communities in South-Eastern Australia.” Austral Ecology 38, no. 3 (2013): 300–312. https://doi.org/10.1111/j.1442-9993.2012.02404.x.
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2013 | Journal Article | IST-REx-ID: 2824
Chatterjee, Krishnendu, and Vinayak Prabhu. “Synthesis of Memory-Efficient, Clock-Memory Free, and Non-Zeno Safety Controllers for Timed Systems.” Information and Computation 228–229 (2013): 83–119. https://doi.org/10.1016/j.ic.2013.04.003.
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2013 | Journal Article | IST-REx-ID: 2827 | OA
Du, Yunlong, Ricardo Tejos, Martina Beck, Ellie Himschoot, Hongjiang Li, Silke Robatzek, Steffen Vanneste, and Jirí Friml. “Salicylic Acid Interferes with Clathrin-Mediated Endocytic Protein Trafficking.” PNAS 110, no. 19 (2013): 7946–51. https://doi.org/10.1073/pnas.1220205110.
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2013 | Journal Article | IST-REx-ID: 2828 | OA
Kolmogorov, Vladimir, and Stanislav Živný. “The Complexity of Conservative Valued CSPs.” Journal of the ACM 60, no. 2 (2013). https://doi.org/10.1145/2450142.2450146.
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2013 | Journal Article | IST-REx-ID: 2829 | OA
Shi, Liang, Marc Avila, and Björn Hof. “Scale Invariance at the Onset of Turbulence in Couette Flow.” Physical Review Letters 110, no. 20 (2013). https://doi.org/10.1103/PhysRevLett.110.204502.
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2013 | Journal Article | IST-REx-ID: 2830
Moussion, Christine, and Michael K Sixt. “A Conduit to Amplify Innate Immunity.” Immunity 38, no. 5 (2013): 853–54. https://doi.org/10.1016/j.immuni.2013.05.005.
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2013 | Journal Article | IST-REx-ID: 2831 | OA
Chatterjee, Krishnendu, Monika Henzinger, Manas Joglekar, and Nisarg Shah. “Symbolic Algorithms for Qualitative Analysis of Markov Decision Processes with Büchi Objectives.” Formal Methods in System Design 42, no. 3 (2013): 301–27. https://doi.org/10.1007/s10703-012-0180-2.
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2013 | Journal Article | IST-REx-ID: 2832 | OA
Tanaka, Hirokazu, Saeko Kitakura, Hana Rakusová, Tomohiro Uemura, Mugurel Feraru, Riet De Rycke, Stéphanie Robert, Tatsuo Kakimoto, and Jiří Friml. “Cell Polarity and Patterning by PIN Trafficking through Early Endosomal Compartments in Arabidopsis Thaliana.” PLoS Genetics 9, no. 5 (2013). https://doi.org/10.1371/journal.pgen.1003540.
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