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3878 Publications

2017 | Journal Article | IST-REx-ID: 954 | OA
On the mechanistic nature of epistasis in a canonical cis-regulatory element
M. Lagator, T. Paixao, N.H. Barton, J.P. Bollback, C.C. Guet, ELife 6 (2017).
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2017 | Journal Article | IST-REx-ID: 955 | OA
Evolution of new regulatory functions on biophysically realistic fitness landscapes
T. Friedlander, R. Prizak, N.H. Barton, G. Tkačik, Nature Communications 8 (2017).
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2017 | Journal Article | IST-REx-ID: 956 | OA
Gradient flow and entropy inequalities for quantum Markov semigroups with detailed balance
E. Carlen, J. Maas, Journal of Functional Analysis 273 (2017) 1810–1869.
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2017 | Book Chapter | IST-REx-ID: 957
Ancestral protein reconstruction and circular permutation for improving the stability and dynamic range of FRET sensors
B. Clifton, J. Whitfield, I. Sanchez-Romero, M. Herde, C. Henneberger, H.L. Janovjak, C. Jackson, in:, V. Stein (Ed.), Synthetic Protein Switches, Springer, 2017, pp. 71–87.
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2017 | Book Chapter | IST-REx-ID: 958
Method for developing optical sensors using a synthetic dye fluorescent protein FRET pair and computational modeling and assessment
J. Mitchell, W. Zhang, M. Herde, C. Henneberger, H.L. Janovjak, M. O’Mara, C. Jackson, in:, V. Stein (Ed.), Synthetic Protein Switches, Springer, 2017, pp. 89–99.
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2017 | Journal Article | IST-REx-ID: 959 | OA
Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics
D. De Martino, Physical Review E Statistical Nonlinear and Soft Matter Physics 95 (2017) 062419.
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2017 | Journal Article | IST-REx-ID: 960 | OA
Cell polarity in cerebral cortex development - cellular architecture shaped by biochemical networks
A.H. Hansen, C.F. Düllberg, C. Mieck, M. Loose, S. Hippenmeyer, Frontiers in Cellular Neuroscience 11 (2017).
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2017 | Conference Paper | IST-REx-ID: 962
Model counting for recursively-defined strings
M. Trinh, D.H. Chu, J. Jaffar, in:, R. Majumdar, V. Kunčak (Eds.), Springer, 2017, pp. 399–418.
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2017 | Conference Paper | IST-REx-ID: 963 | OA
Timed network games with clocks
G. Avni, S. Guha, O. Kupferman, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
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2017 | Research Data Reference | IST-REx-ID: 9707
Data from: Ret and Etv4 promote directed movements of progenitor cells during renal branching morphogenesis
P. Riccio, C. Cebrián, H. Zong, S. Hippenmeyer, F. Costantini, (2017).
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2017 | Research Data Reference | IST-REx-ID: 9709 | OA
Data from: Error-robust modes of the retinal population code
J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, M. Berry, (2017).
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2017 | Research Data Reference | IST-REx-ID: 9842 View | Files available | DOI
 
2017 | Research Data Reference | IST-REx-ID: 9844
Source data for figures and tables
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
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2017 | Research Data Reference | IST-REx-ID: 9845
Mathematical model
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
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2017 | Research Data Reference | IST-REx-ID: 9846
Supplementary methods
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
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2017 | Research Data Reference | IST-REx-ID: 9849
Modelling and simulation details
M. Lukacisinova, S. Novak, T. Paixao, (2017).
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2017 | Research Data Reference | IST-REx-ID: 9850
Extensions of the model
M. Lukacisinova, S. Novak, T. Paixao, (2017).
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2017 | Research Data Reference | IST-REx-ID: 9851
Heuristic prediction for multiple stresses
M. Lukacisinova, S. Novak, T. Paixao, (2017).
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2017 | Research Data Reference | IST-REx-ID: 9852
Resistance frequencies for different combination strategies
M. Lukacisinova, S. Novak, T. Paixao, (2017).
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2017 | Research Data Reference | IST-REx-ID: 9853
Raw data from ant queens increase their reproductive efforts after pathogen infection
J. Giehr, A.V. Grasse, S. Cremer, J. Heinze, A. Schrempf, (2017).
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2017 | Research Data Reference | IST-REx-ID: 9855
Supplementary appendix
M.J. Chalk, P. Masset, B. Gutkin, S. Denève, (2017).
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2017 | Research Data Reference | IST-REx-ID: 9856
Supporting Information concerning additional likelihood analyses and results
T. Schmidt, N.H. Barton, G. Rasic, A. Turley, B. Montgomery, I. Iturbe Ormaetxe, P. Cook, P. Ryan, S. Ritchie, A. Hoffmann, S. O’Neill, M. Turelli, (2017).
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2017 | Research Data Reference | IST-REx-ID: 9857
Supporting information concerning observed wMel frequencies and analyses of habitat variables
T. Schmidt, N.H. Barton, G. Rasic, A. Turley, B. Montgomery, I. Iturbe Ormaetxe, P. Cook, P. Ryan, S. Ritchie, A. Hoffmann, S. O’Neill, M. Turelli, (2017).
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2017 | Research Data Reference | IST-REx-ID: 9858
Excel file with data on mosquito densities, Wolbachia infection status and housing characteristics
T. Schmidt, N.H. Barton, G. Rasic, A. Turley, B. Montgomery, I. Iturbe Ormaetxe, P. Cook, P. Ryan, S. Ritchie, A. Hoffmann, S. O’Neill, M. Turelli, (2017).
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2017 | Research Data Reference | IST-REx-ID: 9859
Additional file 1: Table S1. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae
J. Greenwood, B. Milutinovic, R. Peuß, S. Behrens, D. Essar, P. Rosenstiel, H. Schulenburg, J. Kurtz, (2017).
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2017 | Research Data Reference | IST-REx-ID: 9860
Additional file 5: Table S3. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae
J. Greenwood, B. Milutinovic, R. Peuß, S. Behrens, D. Essar, P. Rosenstiel, H. Schulenburg, J. Kurtz, (2017).
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2017 | Research Data Reference | IST-REx-ID: 9861 View | Files available | DOI
 
2017 | Journal Article | IST-REx-ID: 988 | OA
Current-phase relation of ballistic graphene Josephson junctions
G. Nanda, J.L. Aguilera Servin, P. Rakyta, A. Kormányos, R. Kleiner, D. Koelle, K. Watanabe, T. Taniguchi, L. Vandersypen, S. Goswami, Nano Letters 17 (2017) 3396–3401.
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2017 | Conference Paper | IST-REx-ID: 989
Transport based image morphing with intensity modulation
J. Maas, M. Rumpf, S. Simon, in:, F. Lauze, Y. Dong, A. Bjorholm Dahl (Eds.), Springer, 2017, pp. 563–577.
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2017 | Journal Article | IST-REx-ID: 990 | OA
Divergence and evolution of assortative mating in a polygenic trait model of speciation with gene flow
H. Sachdeva, N.H. Barton, Evolution; International Journal of Organic Evolution 71 (2017) 1478–1493.
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2017 | Journal Article | IST-REx-ID: 991
Synaptotagmins: That’s why so many
C. Chen, P.M. Jonas, Neuron 94 (2017) 694–696.
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2017 | Thesis | IST-REx-ID: 992 | OA
Complexity of constraint satisfaction
M. Rolinek, Complexity of Constraint Satisfaction, IST Austria, 2017.
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2017 | Journal Article | IST-REx-ID: 993 | OA
Subsampling scaling
A. Levina (Martius), V. Priesemann, Nature Communications 8 (2017).
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2017 | Journal Article | IST-REx-ID: 994 | OA
Fingerprints of angulon instabilities in the spectra of matrix-isolated molecules
I. Cherepanov, M. Lemeshko, Physical Review Materials 1 (2017).
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2017 | Journal Article | IST-REx-ID: 995 | OA
Diagrammatic approach to orbital quantum impurities interacting with a many-particle environment
G. Bighin, M. Lemeshko, Physical Review B - Condensed Matter and Materials Physics 96 (2017).
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2017 | Journal Article | IST-REx-ID: 996 | OA
Strongly aligned molecules inside helium droplets in the near-adiabatic regime
B. Shepperson, A. Chatterley, A. Søndergaard, L. Christiansen, M. Lemeshko, H. Stapelfeldt, The Journal of Chemical Physics 147 (2017).
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2017 | Journal Article | IST-REx-ID: 997 | OA
Emergence of non-abelian magnetic monopoles in a quantum impurity problem
E. Yakaboylu, A. Deuchert, M. Lemeshko, APS Physics, Physical Review Letters 119 (2017).
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2017 | Conference Paper | IST-REx-ID: 998 | OA
iCaRL: Incremental classifier and representation learning
S.A. Rebuffi, A. Kolesnikov, G. Sperl, C. Lampert, in:, IEEE, 2017, pp. 5533–5542.
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2017 | Conference Paper | IST-REx-ID: 999 | OA
Multi-task learning with labeled and unlabeled tasks
A. Pentina, C. Lampert, in:, Omnipress, 2017, pp. 2807–2816.
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2017 | Book Chapter | IST-REx-ID: 424 | OA
Bounding helly numbers via betti numbers
X. Goaoc, P. Paták, Z. Patakova, M. Tancer, U. Wagner, in:, M. Loebl, J. Nešetřil, R. Thomas (Eds.), A Journey through Discrete Mathematics: A Tribute to Jiri Matousek, Springer, 2017, pp. 407–447.
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2017 | Conference Paper | IST-REx-ID: 431 | OA
QSGD: Communication-efficient SGD via gradient quantization and encoding
D.-A. Alistarh, D. Grubic, J. Li, R. Tomioka, M. Vojnović, in:, Neural Information Processing Systems Foundation, Inc., 2017, pp. 1710–1721.
View | Download Submitted Version (ext.) | arXiv
 
2017 | Conference Paper | IST-REx-ID: 432 | OA
ZipML: Training linear models with end-to-end low precision, and a little bit of deep learning
H. Zhang, J. Li, K. Kara, D.-A. Alistarh, J. Liu, C. Zhang, in:, Proceedings of Machine Learning Research, PMLR, 2017, pp. 4035–4043.
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2017 | Journal Article | IST-REx-ID: 481 | OA
Planar matchings for weighted straight skeletons
T. Biedl, S. Huber, P. Palfrader, International Journal of Computational Geometry and Applications 26 (2017) 211–229.
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2017 | Journal Article | IST-REx-ID: 681 | OA
Doomsday equilibria for omega-regular games
K. Chatterjee, L. Doyen, E. Filiot, J. Raskin, Information and Computation 254 (2017) 296–315.
View | Files available | DOI | Download Submitted Version (ext.) | arXiv
 
2017 | Journal Article | IST-REx-ID: 1159 | OA
Cis-cinnamic acid is a novel natural auxin efflux inhibitor that promotes lateral root formation
W. Steenackers, P. Klíma, M. Quareshy, I. Cesarino, R. Kumpf, S. Corneillie, P. Araújo, T. Viaene, G. Goeminne, M. Nowack, K. Ljung, J. Friml, J. Blakeslee, O. Novák, E. Zažímalová, R. Napier, W. Boerjan, B. Vanholme, Plant Physiology 173 (2017) 552–565.
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2017 | Book Chapter | IST-REx-ID: 625 | OA
The cost of exactness in quantitative reachability
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, L. Aceto, G. Bacci, A. Ingólfsdóttir, A. Legay, R. Mardare (Eds.), Models, Algorithms, Logics and Tools, Springer, 2017, pp. 367–381.
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2017 | Book | IST-REx-ID: 567
A Dynamical Approach to Random Matrix Theory
L. Erdös, H. Yau, A Dynamical Approach to Random Matrix Theory, American Mathematical Society, 2017.
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2017 | Book Chapter | IST-REx-ID: 649
Entropic Ricci curvature for discrete spaces
J. Maas, in:, L. Najman, P. Romon (Eds.), Modern Approaches to Discrete Curvature, Springer, 2017, pp. 159–174.
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2017 | Conference (Editor) | IST-REx-ID: 638
Numerical Software Verification
S. Bogomolov, M. Martel, P. Prabhakar, eds., Numerical Software Verification, Springer, 2017.
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2017 | Journal Article | IST-REx-ID: 1528 | OA
Delocalization for a class of random block band matrices
Z. Bao, L. Erdös, Probability Theory and Related Fields 167 (2017) 673–776.
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