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2682 Publications

2013 | Journal Article | IST-REx-ID: 2857   OA
S. Szobota, C. Mckenzie, and H. L. Janovjak, “Optical control of ligand-gated ion channels,” Methods in Molecular Biology, vol. 998, pp. 417–435, 2013.
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2013 | Journal Article | IST-REx-ID: 2845
T. Rose, P. Schönenberger, K. Jezek, and T. Oertner, “Developmental refinement of vesicle cycling at Schaffer collateral synapses,” Neuron, vol. 77, no. 6, pp. 1109–1121, 2013.
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2013 | Journal Article | IST-REx-ID: 3261   OA
J. Dubuis, G. Tkacik, E. Wieschaus, T. Gregor, and W. Bialek, “Positional information, in bits,” PNAS, vol. 110, no. 41, pp. 16301–16308, 2013.
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2013 | Journal Article | IST-REx-ID: 507   OA
S. Kim et al., “Adaptor protein complex 2-mediated endocytosis is crucial for male reproductive organ development in arabidopsis,” Plant Cell, vol. 25, no. 8, pp. 2970–2985, 2013.
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2013 | Journal Article | IST-REx-ID: 499
Y. Wakamoto et al., “Dynamic persistence of antibiotic-stressed mycobacteria,” Science, vol. 339, no. 6115, pp. 91–95, 2013.
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2013 | Journal Article | IST-REx-ID: 502
O. Blazy, G. Fuchsbauer, D. Pointcheval, and D. Vergnaud, “Short blind signatures,” Journal of Computer Security, vol. 21, no. 5, pp. 627–661, 2013.
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2013 | Technical Report | IST-REx-ID: 5402   OA
T. A. Henzinger and A. Sezgin, How free is your linearizable concurrent data structure? IST Austria, 2013.
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2013 | Report | IST-REx-ID: 5407   OA
J. Porsche, Technical requirements and features. IST Austria, 2013.
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2013 | Conference Paper | IST-REx-ID: 1385   OA
G. Hofferek, A. Gupta, B. Könighofer, J. Jiang, and R. Bloem, “Synthesizing multiple boolean functions using interpolation on a single proof,” in 2013 Formal Methods in Computer-Aided Design, Portland, OR, United States, 2013, pp. 77–84.
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2013 | Technical Report | IST-REx-ID: 5399
J. Reiter, I. Bozic, K. Chatterjee, and M. Nowak, TTP: Tool for Tumor Progression. IST Austria, 2013.
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2013 | Conference Paper | IST-REx-ID: 2181   OA
T. A. Henzinger, C. Kirsch, H. Payer, A. Sezgin, and A. Sokolova, “Quantitative relaxation of concurrent data structures,” in Proceedings of the 40th annual ACM SIGPLAN-SIGACT symposium on Principles of programming language, Rome, Italy, 2013, pp. 317–328.
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2013 | Journal Article | IST-REx-ID: 2299   OA
Y. Godhal, K. Chatterjee, and T. A. Henzinger, “Synthesis of AMBA AHB from formal specification: A case study,” International Journal on Software Tools for Technology Transfer, vol. 15, no. 5–6, pp. 585–601, 2013.
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2013 | Journal Article | IST-REx-ID: 2814   OA
K. Chatterjee, L. Alfaro, and R. Majumdar, “The complexity of coverage,” International Journal of Foundations of Computer Science, vol. 24, no. 2, pp. 165–185, 2013.
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2013 | Conference Paper | IST-REx-ID: 2819   OA
K. Chatterjee and V. Prabhu, “Quantitative timed simulation functions and refinement metrics for real-time systems,” in Proceedings of the 16th International Conference on Hybrid Systems: Computation and Control, Philadelphia, PA USA, 2013, vol. 1, pp. 273–282.
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2013 | Journal Article | IST-REx-ID: 2282   OA
P. Campinho, M. Behrndt, J. Ranft, T. Risler, N. Minc, and C.-P. J. Heisenberg, “Tension-oriented cell divisions limit anisotropic tissue tension in epithelial spreading during zebrafish epiboly,” Nature Cell Biology, vol. 15, pp. 1405–1414, 2013.
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2013 | Conference Paper | IST-REx-ID: 2446   OA
K. Chatterjee, A. Gaiser, and J. Kretinsky, “Automata with generalized Rabin pairs for probabilistic model checking and LTL synthesis,” vol. 8044. Springer, pp. 559–575, 2013.
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2013 | Thesis | IST-REx-ID: 1405
D. Zufferey, Analysis of dynamic message passing programs. IST Austria, 2013.
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2013 | Journal Article | IST-REx-ID: 2939
C. Chen and M. Kerber, “An output sensitive algorithm for persistent homology,” Computational Geometry: Theory and Applications, vol. 46, no. 4, pp. 435–447, 2013.
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2013 | Conference Paper | IST-REx-ID: 2237   OA
R. Blanc, A. Gupta, L. Kovács, and B. Kragl, “Tree interpolation in Vampire,” vol. 8312. Springer, pp. 173–181, 2013.
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2013 | Thesis | IST-REx-ID: 1406
P. Campinho, Mechanics of zebrafish epiboly: Tension-oriented cell divisions limit anisotropic tissue tension in epithelial spreading. IST Austria, 2013.
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2013 | Conference Paper | IST-REx-ID: 2238
K. Chatterjee, V. Forejt, and D. Wojtczak, “Multi-objective discounted reward verification in graphs and MDPs,” vol. 8312. Springer, pp. 228–242, 2013.
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2013 | Journal Article | IST-REx-ID: 2283
C. Pull, W. Hughes, and M. Brown, “Tolerating an infection: an indirect benefit of co-founding queen associations in the ant Lasius niger ,” Naturwissenschaften, vol. 100, no. 12, pp. 1125–1136, 2013.
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2013 | Conference (Editor) | IST-REx-ID: 2288
A. Gupta and T. A. Henzinger, Eds., Computational Methods in Systems Biology, vol. 8130. Springer, 2013.
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2013 | Journal Article | IST-REx-ID: 2290   OA
Y. Boutté et al., “ECHIDNA mediated post Golgi trafficking of auxin carriers for differential cell elongation,” PNAS, vol. 110, no. 40, pp. 16259–16264, 2013.
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2013 | Journal Article | IST-REx-ID: 2264   OA
H. Liang, G. Xiao, H. Yin, S. Hippenmeyer, J. Horowitz, and T. Ghashghaei, “Neural development is dependent on the function of specificity protein 2 in cell cycle progression,” Development, vol. 140, no. 3, pp. 552–561, 2013.
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2013 | Journal Article | IST-REx-ID: 2303
S. Hippenmeyer, “Dissection of gene function at clonal level using mosaic analysis with double markers,” Frontiers in Biology, vol. 8, no. 6, pp. 557–568, 2013.
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2013 | Conference Paper | IST-REx-ID: 2276   OA
I. Gridchyn and V. Kolmogorov, “Potts model, parametric maxflow and k-submodular functions,” presented at the ICCV: International Conference on Computer Vision, Sydney, Australia, 2013, pp. 2320–2327.
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2013 | Journal Article | IST-REx-ID: 2466   OA
R. Ando, N. Thuerey, and C. J. Wojtan, “Highly adaptive liquid simulations on tetrahedral meshes,” ACM Transactions on Graphics, vol. 32, no. 4, 2013.
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2013 | Journal Article | IST-REx-ID: 2473   OA
N. H. Barton, A. Etheridge, J. Kelleher, and A. Véber, “Genetic hitch-hiking in spatially extended populations,” Theoretical Population Biology, vol. 87, no. 8, pp. 75–89, 2013.
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2013 | Conference Paper | IST-REx-ID: 2719
T. Paixao and N. H. Barton, “A variance decomposition approach to the analysis of genetic algorithms,” in Proceedings of the 15th annual conference on Genetic and evolutionary computation, Amsterdam, Netherlands, 2013, pp. 845–852.
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2013 | Journal Article | IST-REx-ID: 2808   OA
K. Landberg et al., “The moss physcomitrella patens reproductive organ development is highly organized, affected by the two SHI/STY genes and by the level of active auxin in the SHI/STY expression domain,” Plant Physiology, vol. 162, no. 3, pp. 1406–1419, 2013.
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2013 | Journal Article | IST-REx-ID: 2822   OA
C. Topp et al., “3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture,” PNAS, vol. 110, no. 18, pp. E1695–E1704, 2013.
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2013 | Journal Article | IST-REx-ID: 2827   OA
Y. Du et al., “Salicylic acid interferes with clathrin-mediated endocytic protein trafficking,” PNAS, vol. 110, no. 19, pp. 7946–7951, 2013.
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2013 | Journal Article | IST-REx-ID: 2834   OA
M. Avila, F. Mellibovsky, N. Roland, and B. Hof, “Streamwise-localized solutions at the onset of turbulence in pipe flow,” Physical Review Letters, vol. 110, no. 22, 2013.
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2013 | Journal Article | IST-REx-ID: 2841
H. Morita and C.-P. J. Heisenberg, “Holding on and letting go: Cadherin turnover in cell intercalation,” Developmental Cell, vol. 24, no. 6, pp. 567–569, 2013.
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2013 | Journal Article | IST-REx-ID: 2810   OA
M. De Vos, F. Poelwijk, N. Battich, J. Ndika, and S. Tans, “Environmental dependence of genetic constraint,” PLoS Genetics, vol. 9, no. 6, 2013.
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2013 | Journal Article | IST-REx-ID: 2860   OA
D. Dupret, J. O’Neill, and J. L. Csicsvari, “Dynamic reconfiguration of hippocampal interneuron circuits during spatial learning,” Neuron, vol. 78, no. 1, pp. 166–180, 2013.
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2013 | Journal Article | IST-REx-ID: 2909   OA
N. H. Barton, A. Etheridge, and A. Véber, “Modelling evolution in a spatial continuum,” Journal of Statistical Mechanics Theory and Experiment, vol. 2013, no. 1, 2013.
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2013 | Journal Article | IST-REx-ID: 2853   OA
D. Refardt, T. Bergmiller, and R. Kümmerli, “Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection,” Proceedings of the Royal Society of London Series B Biological Sciences, vol. 280, no. 1759, 2013.
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2013 | Journal Article | IST-REx-ID: 3116
K. Chatterjee, L. De Alfaro, M. Faella, R. Majumdar, and V. Raman, “Code aware resource management,” Formal Methods in System Design, vol. 42, no. 2, pp. 142–174, 2013.
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2013 | Journal Article | IST-REx-ID: 2815
H. Edelsbrunner, B. T. Fasy, and G. Rote, “Add isotropic Gaussian kernels at own risk: More and more resilient modes in higher dimensions,” Discrete & Computational Geometry, vol. 49, no. 4, pp. 797–822, 2013.
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2013 | Journal Article | IST-REx-ID: 476   OA
D. Dickerson and D. Bilkey, “Aberrant neural synchrony in the maternal immune activation model: Using translatable measures to explore targeted interventions,” Frontiers in Behavioral Neuroscience, vol. 7, no. DEC, 2013.
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2013 | Journal Article | IST-REx-ID: 508   OA
E. Tarazona Santos et al., “Evolutionary dynamics of the human NADPH oxidase genes CYBB, CYBA, NCF2, and NCF4: Functional implications,” Molecular Biology and Evolution, vol. 30, no. 9, pp. 2157–2167, 2013.
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2013 | Journal Article | IST-REx-ID: 527
K. T. Wabnik, H. Robert, R. Smith, and J. Friml, “Modeling framework for the establishment of the apical-basal embryonic axis in plants,” Current Biology, vol. 23, no. 24, pp. 2513–2518, 2013.
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2013 | Journal Article | IST-REx-ID: 522
E. Fuertbauer et al., “Thymic medullar conduits-associated podoplanin promotes natural regulatory T cells,” Immunology Letters, vol. 154, no. 1–2, pp. 31–41, 2013.
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2013 | Technical Report | IST-REx-ID: 5403   OA
K. Chatterjee and R. Ibsen-Jensen, Qualitative analysis of concurrent mean-payoff games. IST Austria, 2013.
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2013 | Conference Paper | IST-REx-ID: 2327
T. A. Henzinger and J. Otop, “From model checking to model measuring,” vol. 8052. Springer, pp. 273–287, 2013.
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2013 | Conference Paper | IST-REx-ID: 1374   OA
K. Chatterjee and N. Fijalkow, “Infinite-state games with finitary conditions,” in 22nd EACSL Annual Conference on Computer Science Logic, Torino, Italy, 2013, vol. 23, pp. 181–196.
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2013 | Conference Paper | IST-REx-ID: 2000   OA
J. Reiter, I. Božić, K. Chatterjee, and M. Nowak, “TTP: Tool for tumor progression,” in Proceedings of 25th Int. Conf. on Computer Aided Verification, St. Petersburg, Russia, 2013, vol. 8044, pp. 101–106.
View | Files available | DOI | Download (ext.) | arXiv
 
2013 | Journal Article | IST-REx-ID: 2858   OA
J. Reiter, I. Božić, B. Allen, K. Chatterjee, and M. Nowak, “The effect of one additional driver mutation on tumor progression,” Evolutionary Applications, vol. 6, no. 1, pp. 34–45, 2013.
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