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3935 Publications
2012 | Journal Article | IST-REx-ID: 2302
The propagation approach for computing biochemical reaction networks
T.A. Henzinger, M. Mateescu, IEEE ACM Transactions on Computational Biology and Bioinformatics 10 (2012) 310–322.
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| PubMed | Europe PMC
T.A. Henzinger, M. Mateescu, IEEE ACM Transactions on Computational Biology and Bioinformatics 10 (2012) 310–322.
2012 | Journal Article | IST-REx-ID: 2318 |

Absence of bound states implies non-negativity of the scattering length
R. Seiringer, Journal of Spectral Theory 2 (2012) 321–328.
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R. Seiringer, Journal of Spectral Theory 2 (2012) 321–328.
2012 | Journal Article | IST-REx-ID: 2411 |

A consistent phylogenetic backbone for the fungi
I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.
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I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.
2012 | Conference Paper | IST-REx-ID: 2715 |

Average case analysis of the classical algorithm for Markov decision processes with Büchi objectives
K. Chatterjee, M. Joglekar, N. Shah, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 461–473.
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K. Chatterjee, M. Joglekar, N. Shah, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 461–473.
2012 | Journal Article | IST-REx-ID: 9451 |

Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes
C.A. Ibarra, X. Feng, V.K. Schoft, T.-F. Hsieh, R. Uzawa, J.A. Rodrigues, A. Zemach, N. Chumak, A. Machlicova, T. Nishimura, D. Rojas, R.L. Fischer, H. Tamaru, D. Zilberman, Science 337 (2012) 1360–1364.
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C.A. Ibarra, X. Feng, V.K. Schoft, T.-F. Hsieh, R. Uzawa, J.A. Rodrigues, A. Zemach, N. Chumak, A. Machlicova, T. Nishimura, D. Rojas, R.L. Fischer, H. Tamaru, D. Zilberman, Science 337 (2012) 1360–1364.
2012 | Journal Article | IST-REx-ID: 9497 |

Deposition of histone variant H2A.Z within gene bodies regulates responsive genes
D. Coleman-Derr, D. Zilberman, PLoS Genetics 8 (2012).
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D. Coleman-Derr, D. Zilberman, PLoS Genetics 8 (2012).
2012 | Journal Article | IST-REx-ID: 9499 |

EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development
S.Y. Kim, J. Lee, L. Eshed-Williams, D. Zilberman, Z.R. Sung, PLoS Genetics 8 (2012).
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S.Y. Kim, J. Lee, L. Eshed-Williams, D. Zilberman, Z.R. Sung, PLoS Genetics 8 (2012).
2012 | Journal Article | IST-REx-ID: 9528
Regulation of biological accuracy, precision, and memory by plant chromatin organization
J.T. Huff, D. Zilberman, Current Opinion in Genetics and Development 22 (2012) 132–138.
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J.T. Huff, D. Zilberman, Current Opinion in Genetics and Development 22 (2012) 132–138.
2012 | Journal Article | IST-REx-ID: 9535 |

DNA methylation, H2A.Z, and the regulation of constitutive expression
D. Coleman-Derr, D. Zilberman, Cold Spring Harbor Symposia on Quantitative Biology 77 (2012) 147–154.
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D. Coleman-Derr, D. Zilberman, Cold Spring Harbor Symposia on Quantitative Biology 77 (2012) 147–154.
2012 | Research Data Reference | IST-REx-ID: 9755
Data from: Social transfer of pathogenic fungus promotes active immunisation in ant colonies
M. Konrad, M. Vyleta, F. Theis, M. Stock, M. Klatt, V. Drescher, C. Marr, L.V. Ugelvig, S. Cremer, (2012).
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M. Konrad, M. Vyleta, F. Theis, M. Stock, M. Klatt, V. Drescher, C. Marr, L.V. Ugelvig, S. Cremer, (2012).
2012 | Research Data Reference | IST-REx-ID: 9757
Data from: Ants disinfect fungus-exposed brood by oral uptake and spread of their poison
S. Tragust, B. Mitteregger, V. Barone, M. Konrad, L.V. Ugelvig, S. Cremer, (2012).
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S. Tragust, B. Mitteregger, V. Barone, M. Konrad, L.V. Ugelvig, S. Cremer, (2012).
2012 | Research Data Reference | IST-REx-ID: 9758
Data from: Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates
S. Aeschbacher, A. Futschik, M. Beaumont, (2012).
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S. Aeschbacher, A. Futschik, M. Beaumont, (2012).
2012 | Journal Article | IST-REx-ID: 3836
Separate compilation of hierarchical real-time programs into linear-bounded embedded machine code
A. Ghosal, D. Iercan, C. Kirsch, T.A. Henzinger, A. Sangiovanni Vincentelli, Science of Computer Programming 77 (2012) 96–112.
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A. Ghosal, D. Iercan, C. Kirsch, T.A. Henzinger, A. Sangiovanni Vincentelli, Science of Computer Programming 77 (2012) 96–112.
2012 | Journal Article | IST-REx-ID: 3846 |

A survey of stochastic ω regular games
K. Chatterjee, T.A. Henzinger, Journal of Computer and System Sciences 78 (2012) 394–413.
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K. Chatterjee, T.A. Henzinger, Journal of Computer and System Sciences 78 (2012) 394–413.
2012 | Journal Article | IST-REx-ID: 3118 |

Tracking surfaces with evolving topology
M. Bojsen-Hansen, H. Li, C. Wojtan, ACM Transactions on Graphics 31 (2012).
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M. Bojsen-Hansen, H. Li, C. Wojtan, ACM Transactions on Graphics 31 (2012).
2012 | Journal Article | IST-REx-ID: 3248 |

Real-time detection of colored objects in multiple camera streams with off-the-shelf hardware components
C. Lampert, J. Peters, Journal of Real-Time Image Processing 7 (2012) 31–41.
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C. Lampert, J. Peters, Journal of Real-Time Image Processing 7 (2012) 31–41.
2012 | Conference Paper | IST-REx-ID: 3134
Add isotropic Gaussian kernels at own risk: More and more resilient modes in higher dimensions
H. Edelsbrunner, B. Fasy, G. Rote, in:, Proceedings of the Twenty-Eighth Annual Symposium on Computational Geometry , ACM, 2012, pp. 91–100.
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H. Edelsbrunner, B. Fasy, G. Rote, in:, Proceedings of the Twenty-Eighth Annual Symposium on Computational Geometry , ACM, 2012, pp. 91–100.
2012 | Conference Paper | IST-REx-ID: 10906 |

HSF(C): A software verifier based on Horn clauses
S. Grebenshchikov, A. Gupta, N.P. Lopes, C. Popeea, A. Rybalchenko, in:, C. Flanagan, B. König (Eds.), Tools and Algorithms for the Construction and Analysis of Systems, Springer, Berlin, Heidelberg, 2012, pp. 549–551.
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S. Grebenshchikov, A. Gupta, N.P. Lopes, C. Popeea, A. Rybalchenko, in:, C. Flanagan, B. König (Eds.), Tools and Algorithms for the Construction and Analysis of Systems, Springer, Berlin, Heidelberg, 2012, pp. 549–551.
2012 | Conference Paper | IST-REx-ID: 10904
Strategy synthesis for multi-dimensional quantitative objectives
K. Chatterjee, M. Randour, J.-F. Raskin, in:, M. Koutny, I. Ulidowski (Eds.), CONCUR 2012 - Concurrency Theory, Springer, Berlin, Heidelberg, 2012, pp. 115–131.
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K. Chatterjee, M. Randour, J.-F. Raskin, in:, M. Koutny, I. Ulidowski (Eds.), CONCUR 2012 - Concurrency Theory, Springer, Berlin, Heidelberg, 2012, pp. 115–131.
2012 | Conference Paper | IST-REx-ID: 10903
Accurate invariant checking for programs manipulating lists and arrays with infinite data
A. Bouajjani, C. Dragoi, C. Enea, M. Sighireanu, in:, Automated Technology for Verification and Analysis, Springer, Berlin, Heidelberg, 2012, pp. 167–182.
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A. Bouajjani, C. Dragoi, C. Enea, M. Sighireanu, in:, Automated Technology for Verification and Analysis, Springer, Berlin, Heidelberg, 2012, pp. 167–182.