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4033 Publications

2011 | Conference Paper | IST-REx-ID: 3346 | OA
Brázdil T, Brožek V, Chatterjee K, Forejt V, Kučera A. 2011. Two views on multiple mean payoff objectives in Markov Decision Processes. LICS: Logic in Computer Science, 5970225.
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2011 | Conference Paper | IST-REx-ID: 3347 | OA
Chatterjee K, Fijalkow N. 2011. Finitary languages. LATA: Language and Automata Theory and Applications, LNCS, vol. 6638, 216–226.
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2011 | Conference Paper | IST-REx-ID: 3348 | OA
Chatterjee K, Prabhu V. 2011. Synthesis of memory efficient real time controllers for safety objectives. HSCC: Hybrid Systems - Computation and Control, 221–230.
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2011 | Conference Paper | IST-REx-ID: 3349 | OA
Chatterjee K, Fijalkow N. 2011. A reduction from parity games to simple stochastic games. GandALF: Games, Automata, Logic, and Formal Verification, EPTCS, vol. 54, 74–86.
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2011 | Conference Paper | IST-REx-ID: 3350
Chatterjee K, Majumdar R. 2011. Minimum attention controller synthesis for omega regular objectives. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, vol. 6919, 145–159.
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2011 | Conference Paper | IST-REx-ID: 3351 | OA
Chatterjee K, Doyen L, Singh R. 2011. On memoryless quantitative objectives. FCT: Fundamentals of Computation Theory, LNCS, vol. 6914, 148–159.
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2011 | Journal Article | IST-REx-ID: 3352
Fisher J, Harel D, Henzinger TA. 2011. Biology as reactivity. Communications of the ACM. 54(10), 72–82.
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2011 | Journal Article | IST-REx-ID: 3353 | OA
Tripakis S, Lickly B, Henzinger TA, Lee E. 2011. A theory of synchronous relational interfaces. ACM Transactions on Programming Languages and Systems (TOPLAS). 33(4), 14.
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2011 | Journal Article | IST-REx-ID: 3354
Chatterjee K, De Alfaro L, Henzinger TA. 2011. Qualitative concurrent parity games. ACM Transactions on Computational Logic (TOCL). 12(4), 28.
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2011 | Conference Paper | IST-REx-ID: 3355 | OA
Halalai R, Henzinger TA, Singh V. 2011. Quantitative evaluation of BFT protocols. QEST: Quantitative Evaluation of Systems, 255–264.
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2011 | Conference Paper | IST-REx-ID: 3356 | OA
Boker U, Chatterjee K, Henzinger TA, Kupferman O. 2011. Temporal specifications with accumulative values. LICS: Logic in Computer Science, 5970226.
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2011 | Conference Paper | IST-REx-ID: 3357
Chatterjee K, Henzinger TA, Horn F. 2011. The complexity of request-response games. LATA: Language and Automata Theory and Applications, LNCS, vol. 6638, 227–237.
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2011 | Conference Paper | IST-REx-ID: 3358 | OA
Henzinger TA, Singh V, Wies T, Zufferey D. 2011. Scheduling large jobs by abstraction refinement. EuroSys, 329–342.
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2011 | Conference Paper | IST-REx-ID: 3359
Cerny P, Henzinger TA. 2011. From boolean to quantitative synthesis. EMSOFT: Embedded Software , 149–154.
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2011 | Conference Paper | IST-REx-ID: 3360 | OA
Boker U, Henzinger TA. 2011. Determinizing discounted-sum automata. CSL: Computer Science Logic, LIPIcs, vol. 12, 82–96.
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2011 | Conference Paper | IST-REx-ID: 3361 | OA
Cerny P, Chatterjee K, Henzinger TA. 2011. The complexity of quantitative information flow problems. CSF: Computer Security Foundations, 205–217.
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2011 | Conference Paper | IST-REx-ID: 3362 | OA
Fisher J, Henzinger TA, Nickovic D, Piterman N, Singh A, Vardi M. 2011. Dynamic reactive modules. CONCUR: Concurrency Theory, LNCS, vol. 6901, 404–418.
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2011 | Preprint | IST-REx-ID: 3363 | OA
Chatterjee K, Henzinger TA, Tracol M. The decidability frontier for probabilistic automata on infinite words.
View | Download Preprint (ext.) | arXiv
 
2011 | Journal Article | IST-REx-ID: 3364 | OA
Didier F, Henzinger TA, Mateescu M, Wolf V. 2011. Approximation of event probabilities in noisy cellular processes. Theoretical Computer Science. 412(21), 2128–2141.
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2011 | Conference Paper | IST-REx-ID: 3365 | OA
Chatterjee K, Henzinger TA, Jobstmann B, Singh R. 2011. QUASY: quantitative synthesis tool. TACAS: Tools and Algorithms for the Construction and Analysis of Systems, LNCS, vol. 6605, 267–271.
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2011 | Conference Paper | IST-REx-ID: 3366 | OA
Cerny P, Chatterjee K, Henzinger TA, Radhakrishna A, Singh R. 2011. Quantitative synthesis for concurrent programs. CAV: Computer Aided Verification, LNCS, vol. 6806, 243–259.
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2011 | Conference Paper | IST-REx-ID: 3367
Chen C, Kerber M. 2011. An output sensitive algorithm for persistent homology. SoCG: Symposium on Computational Geometry, 207–216.
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2011 | Journal Article | IST-REx-ID: 3368 | OA
Krens G, Möllmert S, Heisenberg C-PJ. 2011. Enveloping cell layer differentiation at the surface of zebrafish germ layer tissue explants. PNAS. 108(3), E9–E10.
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2011 | Journal Article | IST-REx-ID: 3369
Pernia-Andrade A, Jonas PM. 2011. The multiple faces of RIM. Neuron. 69(2), 185–187.
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2011 | Journal Article | IST-REx-ID: 3370 | OA
Kupczok A. 2011. Consequences of different null models on the tree shape bias of supertree methods. Systematic Biology. 60(2), 218–225.
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2011 | Journal Article | IST-REx-ID: 3371 | OA
Sixt MK, Parent C. 2011. Cells on the move in Philadelphia. Molecular Biology and Evolution. 22(6), 724.
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2011 | Journal Article | IST-REx-ID: 3372 | OA
Abbot P et al. 2011. Inclusive fitness theory and eusociality. Nature. 471(7339), E1–E4.
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2011 | Journal Article | IST-REx-ID: 3373 | OA
Jahnel M, Behrndt M, Jannasch A, Schaeffer E, Grill S. 2011. Measuring the complete force field of an optical trap. Optics Letters. 36(7), 1260–1262.
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2011 | Journal Article | IST-REx-ID: 3374 | OA
Tkačik G, Walczak A. 2011. Information transmission in genetic regulatory networks a review. Journal of Physics: Condensed Matter. 23(15), 153102.
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2011 | Journal Article | IST-REx-ID: 3375 | OA
de Vladar H, Barton NH. 2011. The statistical mechanics of a polygenic character under stabilizing selection mutation and drift. Journal of the Royal Society Interface. 8(58), 720–739.
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2011 | Journal Article | IST-REx-ID: 3376 | OA
Bollenbach MT, Kishony R. 2011. Resolution of gene regulatory conflicts caused by combinations of antibiotics. Molecular Cell. 42(4), 413–425.
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2011 | Journal Article | IST-REx-ID: 3377 | OA
Edelsbrunner H, Morozov D, Patel A. 2011. Quantifying transversality by measuring the robustness of intersections. Foundations of Computational Mathematics. 11(3), 345–361.
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2011 | Journal Article | IST-REx-ID: 3378
Bendich P, Harer J. 2011. Persistent intersection homology. Foundations of Computational Mathematics. 11(3), 305–336.
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2011 | Journal Article | IST-REx-ID: 3379 | OA
Row R, Maître J-L, Martin B, Stockinger P, Heisenberg C-PJ, Kimelman D. 2011. Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail. Developmental Biology. 354(1), 102–110.
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2011 | Journal Article | IST-REx-ID: 3380 | OA
Logeswaran S, Barton NH. 2011. Mapping Mendelian traits in asexual progeny using changes in marker allele frequency. Genetical Research. 93(3), 221–232.
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2011 | Journal Article | IST-REx-ID: 3381 | OA
Henzinger TA, Jobstmann B, Wolf V. 2011. Formalisms for specifying Markovian population models. IJFCS: International Journal of Foundations of Computer Science. 22(4), 823–841.
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2011 | Journal Article | IST-REx-ID: 3382
Kroemer O, Lampert C, Peters J. 2011. Learning dynamic tactile sensing with robust vision based training. IEEE Transactions on Robotics. 27(3), 545–557.
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2011 | Journal Article | IST-REx-ID: 3383
Heisenberg C-PJ. 2011. Invited Lectures ‐ Symposia Area. FEBS Journal. 278(S1), 24–24.
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2011 | Journal Article | IST-REx-ID: 3384 | OA
Tkačik G, Garrigan P, Ratliff C, Milcinski G, Klein J, Seyfarth L, Sterling P, Brainard D, Balasubramanian V. 2011. Natural images from the birthplace of the human eye. PLoS One. 6(6), e20409.
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2011 | Journal Article | IST-REx-ID: 3385
Sixt MK. 2011. Interstitial locomotion of leukocytes. Immunology Letters. 138(1), 32–34.
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2011 | Journal Article | IST-REx-ID: 3386
Schrempf A, Cremer S, Heinze J. 2011. Social influence on age and reproduction reduced lifespan and fecundity in multi queen ant colonies. Journal of Evolutionary Biology. 24(7), 1455–1461.
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2011 | Journal Article | IST-REx-ID: 3387 | OA
Kupczok A. 2011. Split based computation of majority rule supertrees. BMC Evolutionary Biology. 11(205), 205.
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2011 | Journal Article | IST-REx-ID: 3388 | OA
Ugelvig LV, Nielsen P, Boomsma J, Nash D. 2011. Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion. BMC Evolutionary Biology. 11(201), 201.
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2011 | Journal Article | IST-REx-ID: 3389
Blaschko M, Shelton J, Bartels A, Lampert C, Gretton A. 2011. Semi supervised kernel canonical correlation analysis with application to human fMRI. Pattern Recognition Letters. 32(11), 1572–1583.
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2011 | Journal Article | IST-REx-ID: 3390 | OA
Barton NH, Etheridge A. 2011. The relation between reproductive value and genetic contribution. Genetics. 188(4), 953–973.
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2011 | Journal Article | IST-REx-ID: 3391 | OA
de Vladar H, Barton NH. 2011. The contribution of statistical physics to evolutionary biology. Trends in Ecology and Evolution. 26(8), 424–432.
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2011 | Journal Article | IST-REx-ID: 3392
Soriano S, Hons M, Schumann K, Kumar V, Dennier T, Lyck R, Sixt MK, Stein J. 2011. In vivo analysis of uropod function during physiological T cell trafficking. Journal of Immunology. 187(5), 2356–2364.
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2011 | Journal Article | IST-REx-ID: 3393 | OA
Barton NH, Turelli M. 2011. Spatial waves of advance with bistable dynamics: Cytoplasmic and genetic analogues of Allee effects. American Naturalist. 178(3), E48–E75.
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2011 | Journal Article | IST-REx-ID: 3394 | OA
Polechova J, Barton NH. 2011. Genetic drift widens the expected cline but narrows the expected cline width. Genetics. 189(1), 227–235.
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2011 | Journal Article | IST-REx-ID: 3396 | OA
Stockinger P, Heisenberg C-PJ, Maître J-L. 2011. Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube. Development. 138(21), 4673–4683.
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2011 | Journal Article | IST-REx-ID: 3397 | OA
Maître J-L, Heisenberg C-PJ. 2011. The role of adhesion energy in controlling cell-cell contacts. Current Opinion in Cell Biology. 23(5), 508–514.
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2011 | Journal Article | IST-REx-ID: 3399 | OA
Cremer S, Schrempf A, Heinze J. 2011. Competition and opportunity shape the reproductive tactics of males in the ant Cardiocondyla obscurior. PLoS One. 6(3), e17323.
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2011 | Journal Article | IST-REx-ID: 3405 | OA
Janovjak HL, Sandoz G, Isacoff E. 2011. Modern ionotropic glutamate receptor with a K+ selectivity signature sequence. Nature Communications. 2(232), 1–6.
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2011 | Journal Article | IST-REx-ID: 469 | OA
Vyleta N, Smith S. 2011. Spontaneous glutamate release is independent of calcium influx and tonically activated by the calcium-sensing receptor. European Journal of Neuroscience. 31(12), 4593–4606.
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2011 | Journal Article | IST-REx-ID: 490 | OA
Schlögl A, Vidaurre C, Sander T. 2011. BioSig: The free and open source software library for biomedical signal processing. Computational Intelligence and Neuroscience. 2011, 935364.
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2011 | Journal Article | IST-REx-ID: 491
Eichner A, Sixt MK. 2011. Setting the clock for recirculating lymphocytes. Science Signaling. 4(198), pe43.
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2011 | Journal Article | IST-REx-ID: 518 | OA
Schraivogel D, Weinmann L, Beier D, Tabatabai G, Eichner A, Zhu J, Anton M, Sixt MK, Weller M, Beier C, Meister G. 2011. CAMTA1 is a novel tumour suppressor regulated by miR-9/9 * in glioblastoma stem cells. EMBO Journal. 30(20), 4309–4322.
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2011 | Journal Article | IST-REx-ID: 531 | OA
Guerraoui R, Henzinger TA, Singh V. 2011. Verification of STM on relaxed memory models. Formal Methods in System Design. 39(3), 297–331.
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2011 | Technical Report | IST-REx-ID: 5380 | OA
Chatterjee K. 2011. Bounded rationality in concurrent parity games, IST Austria, 53p.
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2011 | Technical Report | IST-REx-ID: 5381 | OA
Chatterjee K, Doyen L. 2011. Partial-observation stochastic games: How to win when belief fails, IST Austria, 43p.
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2011 | Technical Report | IST-REx-ID: 5382 | OA
Chatterjee K. 2011. Robustness of structurally equivalent concurrent parity games, IST Austria, 18p.
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2011 | Technical Report | IST-REx-ID: 5383 | OA
Wies T, Muñiz M, Kuncak V. 2011. On an efficient decision procedure for imperative tree data structures, IST Austria, 25p.
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2011 | Technical Report | IST-REx-ID: 5384 | OA
Chatterjee K, Tracol M. 2011. Decidable problems for probabilistic automata on infinite words, IST Austria, 30p.
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2011 | Technical Report | IST-REx-ID: 5385 | OA
Boker U, Chatterjee K, Henzinger TA, Kupferman O. 2011. Temporal specifications with accumulative values, IST Austria, 14p.
View | Files available | DOI
 
2011 | Technical Report | IST-REx-ID: 5387 | OA
Chatterjee K, Doyen L. 2011. Energy and mean-payoff parity Markov decision processes, IST Austria, 20p.
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2011 | Journal Article | IST-REx-ID: 6496 | OA
Park H, Oikonomou P, Guet CC, Cluzel P. 2011. Noise underlies switching behavior of the bacterial flagellum. Biophysical Journal. 101(10), 2336–2340.
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2011 | Journal Article | IST-REx-ID: 9483 | OA
Hsieh T-F, Shin J, Uzawa R, Silva P, Cohen S, Bauer MJ, Hashimoto M, Kirkbride RC, Harada JJ, Zilberman D, Fischer RL. 2011. Regulation of imprinted gene expression in Arabidopsis endosperm. Proceedings of the National Academy of Sciences. 108(5), 1755–1762.
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2011 | Other Publication | IST-REx-ID: 9522 | OA
Zilberman D. 2011. Balancing parental contributions in plant embryonic gene activation, Elsevier,p.
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2011 | Conference Paper | IST-REx-ID: 9648 | OA
Gonzalez-Diaz R, Ion A, Jimenez MJ, Poyatos R. 2011. Incremental-decremental algorithm for computing AT-models and persistent homology. Computer Analysis of Images and Patterns. CAIP: International Conference on Computer Analysis of Images and Patterns, LNCS, vol. 6854, 286–293.
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2011 | Conference Paper | IST-REx-ID: 9943 | OA
Sommer CM, Straehle C, Köthe U, Hamprecht FA. 2011. Ilastik: Interactive learning and segmentation toolkit. 2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro. ISBI: International Symposium on Biomedical Imaging.
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2011 | Journal Article | IST-REx-ID: 3429
Plachta N, Bollenbach MT, Pease S, Fraser S, Pantazis P. 2011. Oct4 kinetics predict cell lineage patterning in the early mammalian embryo. Nature Cell Biology. 13(2), 117–123.
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2011 | Journal Article | IST-REx-ID: 3505 | OA
Sixt MK, Lämmermann T. 2011. In vitro analysis of chemotactic leukocyte migration in 3D environments. Cell Migration. 769, 149–165.
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2011 | Journal Article | IST-REx-ID: 3771
Pavan A, Martins F, Santos F, Ditchfield A, Fernandes Redondo RA. 2011. Patterns of diversification in two species of short-tailed bats (Carollia Gray, 1838): the effects of historical fragmentation of Brazilian rainforests. Biological Journal of the Linnean Society. 102(3), 527–539.
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2011 | Journal Article | IST-REx-ID: 3778 | OA
Barton NH. 2011. Estimating linkage disequilibria. Heredity. 106(2), 205–206.
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2011 | Journal Article | IST-REx-ID: 3781
Fasy BT. 2011. The difference in length of curves in R^n. Acta Sci. Math. (Szeged). 77(1–2), 359–367.
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2011 | Journal Article | IST-REx-ID: 3784 | OA
Palero F, Guerao G, Clark P, Abello P. 2011. Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description. Journal of the Marine Biological Association of the United Kingdom. 91(2), 485–492.
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2011 | Book Chapter | IST-REx-ID: 3791
Krens G, Heisenberg C-PJ. 2011.Cell sorting in development. In: Forces and Tension in Development. Current Topics in Developmental Biology, vol. 95, 189–213.
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2011 | Book Chapter | IST-REx-ID: 3796 | OA
Edelsbrunner H, Kerber M. 2011.Covering and packing with spheres by diagonal distortion in R^n. In: Rainbow of Computer Science. LNCS, vol. 6570, 20–35.
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2011 | Journal Article | IST-REx-ID: 3965
Wang B, Edelsbrunner H, Morozov D. 2011. Computing elevation maxima by searching the Gauss sphere. Journal of Experimental Algorithmics. 16(2.2), 1–13.
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2011 | Journal Article | IST-REx-ID: 3267
Chen C, Freedman D. 2011. Hardness results for homology localization. Discrete & Computational Geometry. 45(3), 425–448.
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2011 | Technical Report | IST-REx-ID: 5386 | OA
Chen C, Freedman D, Lampert C. 2011. Enforcing topological constraints in random field image segmentation, IST Austria, 69p.
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2011 | Conference Paper | IST-REx-ID: 3336
Chen C, Freedman D, Lampert C. 2011. Enforcing topological constraints in random field image segmentation. CVPR: Computer Vision and Pattern Recognition. CVPR: Conference on Computer Vision and Pattern Recognition, 2089–2096.
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2011 | Book Chapter | IST-REx-ID: 3311 | OA
Edelsbrunner H.Alpha shapes - a survey. In: Tessellations in the Sciences: Virtues, Techniques and Applications of Geometric Tilings. .
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2011 | Conference Paper | IST-REx-ID: 10907
Artner NM, Ion A, Kropatsch WG. 2011. Spatio-temporal extraction of articulated models in a graph pyramid. Graph-Based Representations in Pattern Recognition. GbRPR: Graph-based Representations in Pattern RecognitionLNIP, LNCS, vol. 6658, 215–224.
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2011 | Conference Paper | IST-REx-ID: 3342 | OA
Chatterjee K, Henzinger MH, Joglekar M, Nisarg S. 2011. Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives. CAV: Computer Aided Verification, LNCS, vol. 6806, 260–276.
View | Files available | DOI | Download Preprint (ext.) | arXiv
 
2011 | Conference Paper | IST-REx-ID: 3343 | OA
Chatterjee K, Henzinger MH. 2011. Faster and dynamic algorithms for maximal end-component decomposition and related graph problems in probabilistic verification. SODA: Symposium on Discrete Algorithms, 1318–1336.
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2011 | Technical Report | IST-REx-ID: 5379 | OA
Chatterjee K, Henzinger MH. 2011. An O(n2) time algorithm for alternating Büchi games, IST Austria, 20p.
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2011 | Journal Article | IST-REx-ID: 3395
Palero F, Abello P, Macpherson E, Beaumont M, Pascual M. 2011. Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster Palinurus elephas. Biological Journal of the Linnean Society. 104(2), 407–418.
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2011 | Research Data Reference | IST-REx-ID: 9762 | OA
Palero F, Abello P, Macpherson E, Beaumont M, Pascual M. 2011. Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas), IST Austria, 10.5061/dryad.299h8.
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2010 | Journal Article | IST-REx-ID: 3303 | OA
Weissman D, Feldman M, Fisher D. 2010. The rate of fitness-valley crossing in sexual populations. Genetics. 186(4), 1389–1410.
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2010 | Journal Article | IST-REx-ID: 474
Barton NH, Kelleher J, Etheridge A. 2010. A new model for extinction and recolonization in two dimensions: Quantifying phylogeography. Evolution. 64(9), 2701–2715.
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2010 | Conference Paper | IST-REx-ID: 488 | OA
Alur R, Cerny P. 2010. Expressiveness of streaming string transducers. FSTTCS: Foundations of Software Technology and Theoretical Computer Science, LIPIcs, vol. 8, 1–12.
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2010 | Conference Paper | IST-REx-ID: 489 | OA
Cristau J, David C, Horn F. 2010. How do we remember the past in randomised strategies? . Proceedings of GandALF 2010. GandALF: Games, Automata, Logic, and Formal Verification, EPTCS, vol. 25, 30–39.
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2010 | Journal Article | IST-REx-ID: 533
Hoenicke J, Leino K, Podelski A, Schäf M, Wies T. 2010. Doomed program points. Formal Methods in System Design. 37(2–3), 171–199.
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2010 | Technical Report | IST-REx-ID: 5388 | OA
Chatterjee K, Cerny P, Henzinger TA, Radhakrishna A, Singh R. 2010. Quantitative synthesis for concurrent programs, IST Austria, 17p.
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2010 | Technical Report | IST-REx-ID: 5389 | OA
Cerny P, Henzinger TA, Radhakrishna A. 2010. Simulation distances, IST Austria, 24p.
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2010 | Technical Report | IST-REx-ID: 5390 | OA
Chatterjee K, Fijalkow N. 2010. Topological, automata-theoretic and logical characterization of finitary languages, IST Austria, 21p.
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2010 | Technical Report | IST-REx-ID: 5391 | OA
Cerny P, Radhakrishna A, Zufferey D, Chaudhuri S, Alur R. 2010. Model checking of linearizability of concurrent list implementations, IST Austria, 27p.
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2010 | Journal Article | IST-REx-ID: 2409 | OA
Kupczok A, Schmidt H, Von Haeseler A. 2010. Accuracy of phylogeny reconstruction methods combining overlapping gene data sets . Algorithms for Molecular Biology. 5(1), 37.
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2010 | Journal Article | IST-REx-ID: 9452
Zemach A, McDaniel IE, Silva P, Zilberman D. 2010. Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science. 328(5980), 916–919.
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