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3878 Publications
2011 | Conference Paper | IST-REx-ID: 3329 |

Deconstructing approximate offsets
E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, in:, Proceedings of the Twenty-Seventh Annual Symposium on Computational Geometry, ACM, 2011, pp. 187–196.
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E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, in:, Proceedings of the Twenty-Seventh Annual Symposium on Computational Geometry, ACM, 2011, pp. 187–196.
2011 | Conference Paper | IST-REx-ID: 3330 |

Root refinement for real polynomials
M. Kerber, M. Sagraloff, in:, Springer, 2011, pp. 209–216.
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M. Kerber, M. Sagraloff, in:, Springer, 2011, pp. 209–216.
2011 | Journal Article | IST-REx-ID: 3332 |

A note on the complexity of real algebraic hypersurfaces
M. Kerber, M. Sagraloff, Graphs and Combinatorics 27 (2011) 419–430.
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M. Kerber, M. Sagraloff, Graphs and Combinatorics 27 (2011) 419–430.
2011 | Journal Article | IST-REx-ID: 3334
Letter from the new editors-in-chief
H. Edelsbrunner, J. Pach, G. Ziegler, Discrete & Computational Geometry 45 (2011) 1–2.
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H. Edelsbrunner, J. Pach, G. Ziegler, Discrete & Computational Geometry 45 (2011) 1–2.
2011 | Book Chapter | IST-REx-ID: 3335 |

Alpha, Betti and the Megaparsec Universe: On the topology of the Cosmic Web
R. Van De Weygaert, G. Vegter, H. Edelsbrunner, B. Jones, P. Pranav, C. Park, W. Hellwing, B. Eldering, N. Kruithof, P. Bos, J. Hidding, J. Feldbrugge, E. Ten Have, M. Van Engelen, M. Caroli, M. Teillaud, in:, M. Gavrilova, K. Tan, M. Mostafavi (Eds.), Transactions on Computational Science XIV, Springer, 2011, pp. 60–101.
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R. Van De Weygaert, G. Vegter, H. Edelsbrunner, B. Jones, P. Pranav, C. Park, W. Hellwing, B. Eldering, N. Kruithof, P. Bos, J. Hidding, J. Feldbrugge, E. Ten Have, M. Van Engelen, M. Caroli, M. Teillaud, in:, M. Gavrilova, K. Tan, M. Mostafavi (Eds.), Transactions on Computational Science XIV, Springer, 2011, pp. 60–101.
2011 | Conference Paper | IST-REx-ID: 3337
Learning anticipation policies for robot table tennis
Z. Wang, C. Lampert, K. Mülling, B. Schölkopf, J. Peters, in:, IEEE, 2011, pp. 332–337.
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Z. Wang, C. Lampert, K. Mülling, B. Schölkopf, J. Peters, in:, IEEE, 2011, pp. 332–337.
2011 | Preprint | IST-REx-ID: 3338 |

Bounded rationality in concurrent parity games
K. Chatterjee, ArXiv (2011) 1–51.
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K. Chatterjee, ArXiv (2011) 1–51.
2011 | Preprint | IST-REx-ID: 3339 |

Magnifying lens abstraction for stochastic games with discounted and long-run average objectives
K. Chatterjee, L. De Alfaro, R. Pritam, ArXiv (2011).
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| arXiv
K. Chatterjee, L. De Alfaro, R. Pritam, ArXiv (2011).
2011 | Conference Paper | IST-REx-ID: 3342 |

Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives
K. Chatterjee, M. Henzinger, M. Joglekar, S. Nisarg, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 260–276.
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K. Chatterjee, M. Henzinger, M. Joglekar, S. Nisarg, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 260–276.
2011 | Conference Paper | IST-REx-ID: 3344
Graph games with reachability objectives
K. Chatterjee, in:, G. Delzanno, I. Potapov (Eds.), Springer, 2011, pp. 1–1.
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K. Chatterjee, in:, G. Delzanno, I. Potapov (Eds.), Springer, 2011, pp. 1–1.
2011 | Conference Paper | IST-REx-ID: 3345 |

Energy and mean-payoff parity Markov Decision Processes
K. Chatterjee, L. Doyen, in:, Springer, 2011, pp. 206–218.
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K. Chatterjee, L. Doyen, in:, Springer, 2011, pp. 206–218.
2011 | Conference Paper | IST-REx-ID: 3346 |

Two views on multiple mean payoff objectives in Markov Decision Processes
T. Brázdil, V. Brožek, K. Chatterjee, V. Forejt, A. Kučera, in:, IEEE, 2011.
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T. Brázdil, V. Brožek, K. Chatterjee, V. Forejt, A. Kučera, in:, IEEE, 2011.
2011 | Conference Paper | IST-REx-ID: 3347 |

Finitary languages
K. Chatterjee, N. Fijalkow, in:, Springer, 2011, pp. 216–226.
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K. Chatterjee, N. Fijalkow, in:, Springer, 2011, pp. 216–226.
2011 | Conference Paper | IST-REx-ID: 3348 |

Synthesis of memory efficient real time controllers for safety objectives
K. Chatterjee, V. Prabhu, in:, Springer, 2011, pp. 221–230.
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K. Chatterjee, V. Prabhu, in:, Springer, 2011, pp. 221–230.
2011 | Conference Paper | IST-REx-ID: 3349 |

A reduction from parity games to simple stochastic games
K. Chatterjee, N. Fijalkow, in:, EPTCS, 2011, pp. 74–86.
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K. Chatterjee, N. Fijalkow, in:, EPTCS, 2011, pp. 74–86.
2011 | Conference Paper | IST-REx-ID: 3350
Minimum attention controller synthesis for omega regular objectives
K. Chatterjee, R. Majumdar, in:, U. Fahrenberg, S. Tripakis (Eds.), Springer, 2011, pp. 145–159.
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K. Chatterjee, R. Majumdar, in:, U. Fahrenberg, S. Tripakis (Eds.), Springer, 2011, pp. 145–159.
2011 | Conference Paper | IST-REx-ID: 3351 |

On memoryless quantitative objectives
K. Chatterjee, L. Doyen, R. Singh, in:, O. Owe, M. Steffen, J.A. Telle (Eds.), Springer, 2011, pp. 148–159.
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K. Chatterjee, L. Doyen, R. Singh, in:, O. Owe, M. Steffen, J.A. Telle (Eds.), Springer, 2011, pp. 148–159.
2011 | Journal Article | IST-REx-ID: 3352
Biology as reactivity
J. Fisher, D. Harel, T.A. Henzinger, Communications of the ACM 54 (2011) 72–82.
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J. Fisher, D. Harel, T.A. Henzinger, Communications of the ACM 54 (2011) 72–82.
2011 | Journal Article | IST-REx-ID: 3353 |

A theory of synchronous relational interfaces
S. Tripakis, B. Lickly, T.A. Henzinger, E. Lee, ACM Transactions on Programming Languages and Systems (TOPLAS) 33 (2011).
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S. Tripakis, B. Lickly, T.A. Henzinger, E. Lee, ACM Transactions on Programming Languages and Systems (TOPLAS) 33 (2011).
2011 | Journal Article | IST-REx-ID: 3354
Qualitative concurrent parity games
K. Chatterjee, L. De Alfaro, T.A. Henzinger, ACM Transactions on Computational Logic (TOCL) 12 (2011).
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K. Chatterjee, L. De Alfaro, T.A. Henzinger, ACM Transactions on Computational Logic (TOCL) 12 (2011).
2011 | Conference Paper | IST-REx-ID: 3355 |

Quantitative evaluation of BFT protocols
R. Halalai, T.A. Henzinger, V. Singh, in:, IEEE, 2011, pp. 255–264.
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R. Halalai, T.A. Henzinger, V. Singh, in:, IEEE, 2011, pp. 255–264.
2011 | Conference Paper | IST-REx-ID: 3356 |

Temporal specifications with accumulative values
U. Boker, K. Chatterjee, T.A. Henzinger, O. Kupferman, in:, IEEE, 2011.
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U. Boker, K. Chatterjee, T.A. Henzinger, O. Kupferman, in:, IEEE, 2011.
2011 | Conference Paper | IST-REx-ID: 3357
The complexity of request-response games
K. Chatterjee, T.A. Henzinger, F. Horn, in:, A.-H. Dediu, S. Inenaga, C. Martín-Vide (Eds.), Springer, 2011, pp. 227–237.
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K. Chatterjee, T.A. Henzinger, F. Horn, in:, A.-H. Dediu, S. Inenaga, C. Martín-Vide (Eds.), Springer, 2011, pp. 227–237.
2011 | Conference Paper | IST-REx-ID: 3358 |

Scheduling large jobs by abstraction refinement
T.A. Henzinger, V. Singh, T. Wies, D. Zufferey, in:, ACM, 2011, pp. 329–342.
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T.A. Henzinger, V. Singh, T. Wies, D. Zufferey, in:, ACM, 2011, pp. 329–342.
2011 | Conference Paper | IST-REx-ID: 3359
From boolean to quantitative synthesis
P. Cerny, T.A. Henzinger, in:, ACM, 2011, pp. 149–154.
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P. Cerny, T.A. Henzinger, in:, ACM, 2011, pp. 149–154.
2011 | Conference Paper | IST-REx-ID: 3360 |

Determinizing discounted-sum automata
U. Boker, T.A. Henzinger, in:, Springer, 2011, pp. 82–96.
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U. Boker, T.A. Henzinger, in:, Springer, 2011, pp. 82–96.
2011 | Conference Paper | IST-REx-ID: 3361 |

The complexity of quantitative information flow problems
P. Cerny, K. Chatterjee, T.A. Henzinger, in:, IEEE, 2011, pp. 205–217.
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P. Cerny, K. Chatterjee, T.A. Henzinger, in:, IEEE, 2011, pp. 205–217.
2011 | Conference Paper | IST-REx-ID: 3362 |

Dynamic reactive modules
J. Fisher, T.A. Henzinger, D. Nickovic, N. Piterman, A. Singh, M. Vardi, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2011, pp. 404–418.
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J. Fisher, T.A. Henzinger, D. Nickovic, N. Piterman, A. Singh, M. Vardi, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2011, pp. 404–418.
2011 | Preprint | IST-REx-ID: 3363 |

The decidability frontier for probabilistic automata on infinite words
K. Chatterjee, T.A. Henzinger, M. Tracol, (n.d.).
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| arXiv
K. Chatterjee, T.A. Henzinger, M. Tracol, (n.d.).
2011 | Journal Article | IST-REx-ID: 3364 |

Approximation of event probabilities in noisy cellular processes
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, Theoretical Computer Science 412 (2011) 2128–2141.
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F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, Theoretical Computer Science 412 (2011) 2128–2141.
2011 | Conference Paper | IST-REx-ID: 3365 |

QUASY: quantitative synthesis tool
K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, in:, Springer, 2011, pp. 267–271.
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K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, in:, Springer, 2011, pp. 267–271.
2011 | Conference Paper | IST-REx-ID: 3366 |

Quantitative synthesis for concurrent programs
P. Cerny, K. Chatterjee, T.A. Henzinger, A. Radhakrishna, R. Singh, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 243–259.
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P. Cerny, K. Chatterjee, T.A. Henzinger, A. Radhakrishna, R. Singh, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 243–259.
2011 | Conference Paper | IST-REx-ID: 3367
An output sensitive algorithm for persistent homology
C. Chen, M. Kerber, in:, ACM, 2011, pp. 207–216.
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C. Chen, M. Kerber, in:, ACM, 2011, pp. 207–216.
2011 | Journal Article | IST-REx-ID: 3368 |

Enveloping cell layer differentiation at the surface of zebrafish germ layer tissue explants
G. Krens, S. Möllmert, C.-P.J. Heisenberg, PNAS 108 (2011) E9–E10.
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G. Krens, S. Möllmert, C.-P.J. Heisenberg, PNAS 108 (2011) E9–E10.
2011 | Journal Article | IST-REx-ID: 3369
The multiple faces of RIM
A. Pernia-Andrade, P.M. Jonas, Neuron 69 (2011) 185–187.
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A. Pernia-Andrade, P.M. Jonas, Neuron 69 (2011) 185–187.
2011 | Journal Article | IST-REx-ID: 3370 |

Consequences of different null models on the tree shape bias of supertree methods
A. Kupczok, Systematic Biology 60 (2011) 218–225.
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A. Kupczok, Systematic Biology 60 (2011) 218–225.
2011 | Journal Article | IST-REx-ID: 3371 |

Cells on the move in Philadelphia
M.K. Sixt, C. Parent, Molecular Biology and Evolution 22 (2011) 724.
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M.K. Sixt, C. Parent, Molecular Biology and Evolution 22 (2011) 724.
2011 | Journal Article | IST-REx-ID: 3372 |

Inclusive fitness theory and eusociality
Abbot P et al. 2011. Inclusive fitness theory and eusociality. Nature. 471(7339), E1–E4.
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| PubMed | Europe PMC
Abbot P et al. 2011. Inclusive fitness theory and eusociality. Nature. 471(7339), E1–E4.
2011 | Journal Article | IST-REx-ID: 3373 |

Measuring the complete force field of an optical trap
M. Jahnel, M. Behrndt, A. Jannasch, E. Schaeffer, S. Grill, Optics Letters 36 (2011) 1260–1262.
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M. Jahnel, M. Behrndt, A. Jannasch, E. Schaeffer, S. Grill, Optics Letters 36 (2011) 1260–1262.
2011 | Journal Article | IST-REx-ID: 3374 |

Information transmission in genetic regulatory networks a review
G. Tkačik, A. Walczak, Journal of Physics: Condensed Matter 23 (2011).
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G. Tkačik, A. Walczak, Journal of Physics: Condensed Matter 23 (2011).
2011 | Journal Article | IST-REx-ID: 3375 |

The statistical mechanics of a polygenic character under stabilizing selection mutation and drift
H. de Vladar, N.H. Barton, Journal of the Royal Society Interface 8 (2011) 720–739.
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H. de Vladar, N.H. Barton, Journal of the Royal Society Interface 8 (2011) 720–739.
2011 | Journal Article | IST-REx-ID: 3376 |

Resolution of gene regulatory conflicts caused by combinations of antibiotics
M.T. Bollenbach, R. Kishony, Molecular Cell 42 (2011) 413–425.
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M.T. Bollenbach, R. Kishony, Molecular Cell 42 (2011) 413–425.
2011 | Journal Article | IST-REx-ID: 3377 |

Quantifying transversality by measuring the robustness of intersections
H. Edelsbrunner, D. Morozov, A. Patel, Foundations of Computational Mathematics 11 (2011) 345–361.
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H. Edelsbrunner, D. Morozov, A. Patel, Foundations of Computational Mathematics 11 (2011) 345–361.
2011 | Journal Article | IST-REx-ID: 3378
Persistent intersection homology
P. Bendich, J. Harer, Foundations of Computational Mathematics 11 (2011) 305–336.
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| DOI
P. Bendich, J. Harer, Foundations of Computational Mathematics 11 (2011) 305–336.
2011 | Journal Article | IST-REx-ID: 3379 |

Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail
R. Row, J.-L. Maître, B. Martin, P. Stockinger, C.-P.J. Heisenberg, D. Kimelman, Developmental Biology 354 (2011) 102–110.
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R. Row, J.-L. Maître, B. Martin, P. Stockinger, C.-P.J. Heisenberg, D. Kimelman, Developmental Biology 354 (2011) 102–110.
2011 | Journal Article | IST-REx-ID: 3380 |

Mapping Mendelian traits in asexual progeny using changes in marker allele frequency
S. Logeswaran, N.H. Barton, Genetical Research 93 (2011) 221–232.
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S. Logeswaran, N.H. Barton, Genetical Research 93 (2011) 221–232.
2011 | Journal Article | IST-REx-ID: 3381 |

Formalisms for specifying Markovian population models
T.A. Henzinger, B. Jobstmann, V. Wolf, IJFCS: International Journal of Foundations of Computer Science 22 (2011) 823–841.
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T.A. Henzinger, B. Jobstmann, V. Wolf, IJFCS: International Journal of Foundations of Computer Science 22 (2011) 823–841.
2011 | Journal Article | IST-REx-ID: 3382
Learning dynamic tactile sensing with robust vision based training
O. Kroemer, C. Lampert, J. Peters, IEEE Transactions on Robotics 27 (2011) 545–557.
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| DOI
O. Kroemer, C. Lampert, J. Peters, IEEE Transactions on Robotics 27 (2011) 545–557.
2011 | Journal Article | IST-REx-ID: 3383
Invited Lectures ‐ Symposia Area
C.-P.J. Heisenberg, FEBS Journal 278 (2011) 24–24.
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| DOI
C.-P.J. Heisenberg, FEBS Journal 278 (2011) 24–24.
2011 | Journal Article | IST-REx-ID: 3384 |

Natural images from the birthplace of the human eye
G. Tkačik, P. Garrigan, C. Ratliff, G. Milcinski, J. Klein, L. Seyfarth, P. Sterling, D. Brainard, V. Balasubramanian, PLoS One 6 (2011).
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G. Tkačik, P. Garrigan, C. Ratliff, G. Milcinski, J. Klein, L. Seyfarth, P. Sterling, D. Brainard, V. Balasubramanian, PLoS One 6 (2011).
2011 | Journal Article | IST-REx-ID: 3385
Interstitial locomotion of leukocytes
M.K. Sixt, Immunology Letters 138 (2011) 32–34.
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| DOI
M.K. Sixt, Immunology Letters 138 (2011) 32–34.
2011 | Journal Article | IST-REx-ID: 3386
Social influence on age and reproduction reduced lifespan and fecundity in multi queen ant colonies
A. Schrempf, S. Cremer, J. Heinze, Journal of Evolutionary Biology 24 (2011) 1455–1461.
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| DOI
A. Schrempf, S. Cremer, J. Heinze, Journal of Evolutionary Biology 24 (2011) 1455–1461.
2011 | Journal Article | IST-REx-ID: 3387 |

Split based computation of majority rule supertrees
A. Kupczok, BMC Evolutionary Biology 11 (2011).
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A. Kupczok, BMC Evolutionary Biology 11 (2011).
2011 | Journal Article | IST-REx-ID: 3388 |

Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion
L.V. Ugelvig, P. Nielsen, J. Boomsma, D. Nash, BMC Evolutionary Biology 11 (2011).
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L.V. Ugelvig, P. Nielsen, J. Boomsma, D. Nash, BMC Evolutionary Biology 11 (2011).
2011 | Journal Article | IST-REx-ID: 3389
Semi supervised kernel canonical correlation analysis with application to human fMRI
M. Blaschko, J. Shelton, A. Bartels, C. Lampert, A. Gretton, Pattern Recognition Letters 32 (2011) 1572–1583.
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| DOI
M. Blaschko, J. Shelton, A. Bartels, C. Lampert, A. Gretton, Pattern Recognition Letters 32 (2011) 1572–1583.
2011 | Journal Article | IST-REx-ID: 3390 |

The relation between reproductive value and genetic contribution
N.H. Barton, A. Etheridge, Genetics 188 (2011) 953–973.
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N.H. Barton, A. Etheridge, Genetics 188 (2011) 953–973.
2011 | Journal Article | IST-REx-ID: 3391 |

The contribution of statistical physics to evolutionary biology
H. de Vladar, N.H. Barton, Trends in Ecology and Evolution 26 (2011) 424–432.
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H. de Vladar, N.H. Barton, Trends in Ecology and Evolution 26 (2011) 424–432.
2011 | Journal Article | IST-REx-ID: 3392
In vivo analysis of uropod function during physiological T cell trafficking
S. Soriano, M. Hons, K. Schumann, V. Kumar, T. Dennier, R. Lyck, M.K. Sixt, J. Stein, Journal of Immunology 187 (2011) 2356–2364.
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| DOI
S. Soriano, M. Hons, K. Schumann, V. Kumar, T. Dennier, R. Lyck, M.K. Sixt, J. Stein, Journal of Immunology 187 (2011) 2356–2364.
2011 | Journal Article | IST-REx-ID: 3393 |

Spatial waves of advance with bistable dynamics: Cytoplasmic and genetic analogues of Allee effects
N.H. Barton, M. Turelli, American Naturalist 178 (2011) E48–E75.
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N.H. Barton, M. Turelli, American Naturalist 178 (2011) E48–E75.
2011 | Journal Article | IST-REx-ID: 3394 |

Genetic drift widens the expected cline but narrows the expected cline width
J. Polechova, N.H. Barton, Genetics 189 (2011) 227–235.
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J. Polechova, N.H. Barton, Genetics 189 (2011) 227–235.
2011 | Journal Article | IST-REx-ID: 3395
Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster Palinurus elephas
F. Palero, P. Abello, E. Macpherson, M. Beaumont, M. Pascual, Biological Journal of the Linnean Society 104 (2011) 407–418.
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F. Palero, P. Abello, E. Macpherson, M. Beaumont, M. Pascual, Biological Journal of the Linnean Society 104 (2011) 407–418.
2011 | Journal Article | IST-REx-ID: 3396 |

Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube
P. Stockinger, C.-P.J. Heisenberg, J.-L. Maître, Development 138 (2011) 4673–4683.
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P. Stockinger, C.-P.J. Heisenberg, J.-L. Maître, Development 138 (2011) 4673–4683.
2011 | Journal Article | IST-REx-ID: 3397 |

The role of adhesion energy in controlling cell-cell contacts
J.-L. Maître, C.-P.J. Heisenberg, Current Opinion in Cell Biology 23 (2011) 508–514.
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J.-L. Maître, C.-P.J. Heisenberg, Current Opinion in Cell Biology 23 (2011) 508–514.
2011 | Journal Article | IST-REx-ID: 3399 |

Competition and opportunity shape the reproductive tactics of males in the ant Cardiocondyla obscurior
S. Cremer, A. Schrempf, J. Heinze, PLoS One 6 (2011).
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| DOI
S. Cremer, A. Schrempf, J. Heinze, PLoS One 6 (2011).
2011 | Journal Article | IST-REx-ID: 3405 |

Modern ionotropic glutamate receptor with a K+ selectivity signature sequence
H.L. Janovjak, G. Sandoz, E. Isacoff, Nature Communications 2 (2011) 1–6.
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| DOI
H.L. Janovjak, G. Sandoz, E. Isacoff, Nature Communications 2 (2011) 1–6.
2011 | Journal Article | IST-REx-ID: 469 |

Spontaneous glutamate release is independent of calcium influx and tonically activated by the calcium-sensing receptor
N. Vyleta, S. Smith, European Journal of Neuroscience 31 (2011) 4593–4606.
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N. Vyleta, S. Smith, European Journal of Neuroscience 31 (2011) 4593–4606.
2011 | Journal Article | IST-REx-ID: 490 |

BioSig: The free and open source software library for biomedical signal processing
A. Schlögl, C. Vidaurre, T. Sander, Computational Intelligence and Neuroscience 2011 (2011).
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A. Schlögl, C. Vidaurre, T. Sander, Computational Intelligence and Neuroscience 2011 (2011).
2011 | Journal Article | IST-REx-ID: 491
Setting the clock for recirculating lymphocytes
A. Eichner, M.K. Sixt, Science Signaling 4 (2011).
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| DOI
A. Eichner, M.K. Sixt, Science Signaling 4 (2011).
2011 | Journal Article | IST-REx-ID: 518 |

CAMTA1 is a novel tumour suppressor regulated by miR-9/9 * in glioblastoma stem cells
D. Schraivogel, L. Weinmann, D. Beier, G. Tabatabai, A. Eichner, J. Zhu, M. Anton, M.K. Sixt, M. Weller, C. Beier, G. Meister, EMBO Journal 30 (2011) 4309–4322.
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| PubMed | Europe PMC
D. Schraivogel, L. Weinmann, D. Beier, G. Tabatabai, A. Eichner, J. Zhu, M. Anton, M.K. Sixt, M. Weller, C. Beier, G. Meister, EMBO Journal 30 (2011) 4309–4322.
2011 | Journal Article | IST-REx-ID: 531 |

Verification of STM on relaxed memory models
R. Guerraoui, T.A. Henzinger, V. Singh, Formal Methods in System Design 39 (2011) 297–331.
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R. Guerraoui, T.A. Henzinger, V. Singh, Formal Methods in System Design 39 (2011) 297–331.
2011 | Technical Report | IST-REx-ID: 5379 |

An O(n2) time algorithm for alternating Büchi games
K. Chatterjee, M. Henzinger, An O(N2) Time Algorithm for Alternating Büchi Games, IST Austria, 2011.
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K. Chatterjee, M. Henzinger, An O(N2) Time Algorithm for Alternating Büchi Games, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5380 |

Bounded rationality in concurrent parity games
K. Chatterjee, Bounded Rationality in Concurrent Parity Games, IST Austria, 2011.
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K. Chatterjee, Bounded Rationality in Concurrent Parity Games, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5381 |

Partial-observation stochastic games: How to win when belief fails
K. Chatterjee, L. Doyen, Partial-Observation Stochastic Games: How to Win When Belief Fails, IST Austria, 2011.
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K. Chatterjee, L. Doyen, Partial-Observation Stochastic Games: How to Win When Belief Fails, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5382 |

Robustness of structurally equivalent concurrent parity games
K. Chatterjee, Robustness of Structurally Equivalent Concurrent Parity Games, IST Austria, 2011.
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K. Chatterjee, Robustness of Structurally Equivalent Concurrent Parity Games, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5383 |

On an efficient decision procedure for imperative tree data structures
T. Wies, M. Muñiz, V. Kuncak, On an Efficient Decision Procedure for Imperative Tree Data Structures, IST Austria, 2011.
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T. Wies, M. Muñiz, V. Kuncak, On an Efficient Decision Procedure for Imperative Tree Data Structures, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5384 |

Decidable problems for probabilistic automata on infinite words
K. Chatterjee, M. Tracol, Decidable Problems for Probabilistic Automata on Infinite Words, IST Austria, 2011.
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K. Chatterjee, M. Tracol, Decidable Problems for Probabilistic Automata on Infinite Words, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5385 |

Temporal specifications with accumulative values
U. Boker, K. Chatterjee, T.A. Henzinger, O. Kupferman, Temporal Specifications with Accumulative Values, IST Austria, 2011.
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U. Boker, K. Chatterjee, T.A. Henzinger, O. Kupferman, Temporal Specifications with Accumulative Values, IST Austria, 2011.
2011 | Technical Report | IST-REx-ID: 5387 |

Energy and mean-payoff parity Markov decision processes
K. Chatterjee, L. Doyen, Energy and Mean-Payoff Parity Markov Decision Processes, IST Austria, 2011.
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K. Chatterjee, L. Doyen, Energy and Mean-Payoff Parity Markov Decision Processes, IST Austria, 2011.
2011 | Journal Article | IST-REx-ID: 6496 |

Noise underlies switching behavior of the bacterial flagellum
H. Park, P. Oikonomou, C.C. Guet, P. Cluzel, Biophysical Journal 101 (2011) 2336–2340.
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| PubMed | Europe PMC
H. Park, P. Oikonomou, C.C. Guet, P. Cluzel, Biophysical Journal 101 (2011) 2336–2340.
2011 | Journal Article | IST-REx-ID: 9483 |

Regulation of imprinted gene expression in Arabidopsis endosperm
T.-F. Hsieh, J. Shin, R. Uzawa, P. Silva, S. Cohen, M.J. Bauer, M. Hashimoto, R.C. Kirkbride, J.J. Harada, D. Zilberman, R.L. Fischer, Proceedings of the National Academy of Sciences 108 (2011) 1755–1762.
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| PubMed | Europe PMC
T.-F. Hsieh, J. Shin, R. Uzawa, P. Silva, S. Cohen, M.J. Bauer, M. Hashimoto, R.C. Kirkbride, J.J. Harada, D. Zilberman, R.L. Fischer, Proceedings of the National Academy of Sciences 108 (2011) 1755–1762.
2011 | Other Publication | IST-REx-ID: 9522 |

Balancing parental contributions in plant embryonic gene activation
D. Zilberman, Balancing Parental Contributions in Plant Embryonic Gene Activation, Elsevier, 2011.
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| PubMed | Europe PMC
D. Zilberman, Balancing Parental Contributions in Plant Embryonic Gene Activation, Elsevier, 2011.
2011 | Conference Paper | IST-REx-ID: 9648 |

Incremental-decremental algorithm for computing AT-models and persistent homology
R. Gonzalez-Diaz, A. Ion, M.J. Jimenez, R. Poyatos, in:, Computer Analysis of Images and Patterns, Springer Nature, 2011, pp. 286–293.
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R. Gonzalez-Diaz, A. Ion, M.J. Jimenez, R. Poyatos, in:, Computer Analysis of Images and Patterns, Springer Nature, 2011, pp. 286–293.
2011 | Research Data Reference | IST-REx-ID: 9762
Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas)
F. Palero, P. Abello, E. Macpherson, M. Beaumont, M. Pascual, (2011).
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F. Palero, P. Abello, E. Macpherson, M. Beaumont, M. Pascual, (2011).
2011 | Conference Paper | IST-REx-ID: 9943 |

Ilastik: Interactive learning and segmentation toolkit
C.M. Sommer, C. Straehle, U. Köthe, F.A. Hamprecht, in:, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro, Institute of Electrical and Electronics Engineers, 2011.
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C.M. Sommer, C. Straehle, U. Köthe, F.A. Hamprecht, in:, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro, Institute of Electrical and Electronics Engineers, 2011.
2011 | Journal Article | IST-REx-ID: 3429
Oct4 kinetics predict cell lineage patterning in the early mammalian embryo
N. Plachta, M.T. Bollenbach, S. Pease, S. Fraser, P. Pantazis, Nature Cell Biology 13 (2011) 117–123.
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| DOI
N. Plachta, M.T. Bollenbach, S. Pease, S. Fraser, P. Pantazis, Nature Cell Biology 13 (2011) 117–123.
2011 | Journal Article | IST-REx-ID: 3505 |

In vitro analysis of chemotactic leukocyte migration in 3D environments
M.K. Sixt, T. Lämmermann, Cell Migration 769 (2011) 149–165.
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M.K. Sixt, T. Lämmermann, Cell Migration 769 (2011) 149–165.
2011 | Journal Article | IST-REx-ID: 3771
Patterns of diversification in two species of short-tailed bats (Carollia Gray, 1838): the effects of historical fragmentation of Brazilian rainforests.
A. Pavan, F. Martins, F. Santos, A. Ditchfield, R.A. Fernandes Redondo, Biological Journal of the Linnean Society 102 (2011) 527–539.
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A. Pavan, F. Martins, F. Santos, A. Ditchfield, R.A. Fernandes Redondo, Biological Journal of the Linnean Society 102 (2011) 527–539.
2011 | Journal Article | IST-REx-ID: 3778 |

Estimating linkage disequilibria
N.H. Barton, Heredity 106 (2011) 205–206.
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| PubMed | Europe PMC
N.H. Barton, Heredity 106 (2011) 205–206.
2011 | Journal Article | IST-REx-ID: 3781
The difference in length of curves in R^n
B.T. Fasy, Acta Sci. Math. (Szeged) 77 (2011) 359–367.
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B.T. Fasy, Acta Sci. Math. (Szeged) 77 (2011) 359–367.
2011 | Journal Article | IST-REx-ID: 3784 |

Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description
F. Palero, G. Guerao, P. Clark, P. Abello, Journal of the Marine Biological Association of the United Kingdom 91 (2011) 485–492.
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F. Palero, G. Guerao, P. Clark, P. Abello, Journal of the Marine Biological Association of the United Kingdom 91 (2011) 485–492.
2011 | Book Chapter | IST-REx-ID: 3791
Cell sorting in development
G. Krens, C.-P.J. Heisenberg, in:, M. Labouesse (Ed.), Forces and Tension in Development, Elsevier, 2011, pp. 189–213.
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G. Krens, C.-P.J. Heisenberg, in:, M. Labouesse (Ed.), Forces and Tension in Development, Elsevier, 2011, pp. 189–213.
2011 | Book Chapter | IST-REx-ID: 3796 |

Covering and packing with spheres by diagonal distortion in R^n
H. Edelsbrunner, M. Kerber, in:, C. Calude, G. Rozenberg, A. Salomaa (Eds.), Rainbow of Computer Science, Springer, 2011, pp. 20–35.
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H. Edelsbrunner, M. Kerber, in:, C. Calude, G. Rozenberg, A. Salomaa (Eds.), Rainbow of Computer Science, Springer, 2011, pp. 20–35.
2011 | Journal Article | IST-REx-ID: 3965
Computing elevation maxima by searching the Gauss sphere
B. Wang, H. Edelsbrunner, D. Morozov, Journal of Experimental Algorithmics 16 (2011) 1–13.
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B. Wang, H. Edelsbrunner, D. Morozov, Journal of Experimental Algorithmics 16 (2011) 1–13.
2011 | Journal Article | IST-REx-ID: 3267
Hardness results for homology localization
C. Chen, D. Freedman, Discrete & Computational Geometry 45 (2011) 425–448.
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C. Chen, D. Freedman, Discrete & Computational Geometry 45 (2011) 425–448.
2011 | Technical Report | IST-REx-ID: 5386 |

Enforcing topological constraints in random field image segmentation
C. Chen, D. Freedman, C. Lampert, Enforcing Topological Constraints in Random Field Image Segmentation, IST Austria, 2011.
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C. Chen, D. Freedman, C. Lampert, Enforcing Topological Constraints in Random Field Image Segmentation, IST Austria, 2011.
2011 | Conference Paper | IST-REx-ID: 3336
Enforcing topological constraints in random field image segmentation
C. Chen, D. Freedman, C. Lampert, in:, CVPR: Computer Vision and Pattern Recognition, IEEE, 2011, pp. 2089–2096.
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C. Chen, D. Freedman, C. Lampert, in:, CVPR: Computer Vision and Pattern Recognition, IEEE, 2011, pp. 2089–2096.
2011 | Book Chapter | IST-REx-ID: 3311 |

Alpha shapes - a survey
H. Edelsbrunner, in:, R. van de Weygaert, G. Vegter, J. Ritzerveld, V. Icke (Eds.), Tessellations in the Sciences: Virtues, Techniques and Applications of Geometric Tilings, Springer, n.d.
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H. Edelsbrunner, in:, R. van de Weygaert, G. Vegter, J. Ritzerveld, V. Icke (Eds.), Tessellations in the Sciences: Virtues, Techniques and Applications of Geometric Tilings, Springer, n.d.
2011 | Conference Paper | IST-REx-ID: 10907
Spatio-temporal extraction of articulated models in a graph pyramid
N.M. Artner, A. Ion, W.G. Kropatsch, in:, X. Jiang, M. Ferrer, A. Torsello (Eds.), Graph-Based Representations in Pattern Recognition, Springer, Berlin, Heidelberg, 2011, pp. 215–224.
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| DOI
N.M. Artner, A. Ion, W.G. Kropatsch, in:, X. Jiang, M. Ferrer, A. Torsello (Eds.), Graph-Based Representations in Pattern Recognition, Springer, Berlin, Heidelberg, 2011, pp. 215–224.
2011 | Conference Paper | IST-REx-ID: 3343 |

Faster and dynamic algorithms for maximal end-component decomposition and related graph problems in probabilistic verification
K. Chatterjee, M. Henzinger, in:, SIAM, 2011, pp. 1318–1336.
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K. Chatterjee, M. Henzinger, in:, SIAM, 2011, pp. 1318–1336.
2010 | Journal Article | IST-REx-ID: 3303 |

The rate of fitness-valley crossing in sexual populations
D. Weissman, M. Feldman, D. Fisher, Genetics 186 (2010) 1389–1410.
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D. Weissman, M. Feldman, D. Fisher, Genetics 186 (2010) 1389–1410.