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2902 Publications

2011 | Journal Article | IST-REx-ID: 3269 | OA
Sheng Y, Cutler B, Chen C, Nasman J. 2011. Perceptual global illumination cancellation in complex projection environments. Computer Graphics Forum. 30(4), 1261–1268.
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2011 | Conference Paper | IST-REx-ID: 3270
Chen C, Kerber M. 2011. Persistent homology computation with a twist. EuroCG: European Workshop on Computational Geometry 197–200.
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2011 | Book Chapter | IST-REx-ID: 3271
Wagner H, Chen C, Vuçini E. 2011. Efficient computation of persistent homology for cubical data. Topological Methods in Data Analysis and Visualization II. , Theory, Algorithms, and Applications, 91–106.
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2011 | Thesis | IST-REx-ID: 3273
Maître J-L. 2011. Mechanics of adhesion and de‐adhesion in zebrafish germ layer progenitors, IST Austria,p.
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2011 | Thesis | IST-REx-ID: 3275
Schumann K. 2011. The role of chemotactic gradients in dendritic cell migration, IST Austria, 141p.
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2011 | Journal Article | IST-REx-ID: 3287
Ruprecht V, Axmann M, Wieser S, Schuetz G. 2011. What can we learn from single molecule trajectories? Current Protein & Peptide Science. 12(8), 714–724.
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2011 | Journal Article | IST-REx-ID: 3288 | OA
Smutny M, Wu S, Gomez G, Mangold S, Yap A, Hamilton N. 2011. Multicomponent analysis of junctional movements regulated by Myosin II isoforms at the epithelial zonula adherens. PLoS One. 6(7).
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2011 | Journal Article | IST-REx-ID: 3290 | OA
Lohse K, Harrison R, Barton NH. 2011. A general method for calculating likelihoods under the coalescent process. Genetics. 189(3), 977–987.
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2011 | Conference Paper | IST-REx-ID: 3297 | OA
Wojtan CJ, Müller Fischer M, Brochu T. 2011. Liquid simulation with mesh-based surface tracking. SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques
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2011 | Conference Paper | IST-REx-ID: 3298 | OA
Raveendran K, Wojtan CJ, Turk G. 2011. Hybrid smoothed particle hydrodynamics. SCA: ACM SIGGRAPH/Eurographics Symposium on Computer animation 33–42.
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2011 | Conference Paper | IST-REx-ID: 3299 | OA
Henzinger TA, Mateescu M. 2011. Propagation models for computing biochemical reaction networks. CMSB: Computational Methods in Systems Biology 1–3.
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2011 | Conference Paper | IST-REx-ID: 3301 | OA
Henzinger TA, Mateescu M. 2011. Tail approximation for the chemical master equation. WCSB: Workshop on Computational Systems Biology (TICSP)
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2011 | Conference Paper | IST-REx-ID: 3302 | OA
Henzinger TA, Singh A, Singh V, Wies T, Zufferey D. 2011. Static scheduling in clouds. HotCloud: Workshop on Hot Topics in Cloud Computing 1–6.
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2011 | Book Chapter | IST-REx-ID: 3311
Edelsbrunner H. 2011. Alpha shapes - a survey. Tessellations in the Sciences.
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2011 | Conference Poster | IST-REx-ID: 3312 | OA
Zheng Y, Gu S, Edelsbrunner H, Tomasi C, Benfey P. 2011. Detailed reconstruction of 3D plant root shape, IEEE,p.
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2011 | Conference Paper | IST-REx-ID: 3313 | OA
Chen C, Edelsbrunner H. 2011. Diffusion runs low on persistence fast. Proceedings of the IEEE International Conference on Computer Vision. ICCV: International Conference on Computer Vision
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2011 | Journal Article | IST-REx-ID: 3315 | OA
Chatterjee K, Henzinger TA, Prabhu V. 2011. Timed parity games: Complexity and robustness. Logical Methods in Computer Science. 7(4).
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2011 | Conference Paper | IST-REx-ID: 3316 | OA
Bloem R, Chatterjee K, Greimel K, Henzinger TA, Jobstmann B. 2011. Specification-centered robustness. 6th IEEE International Symposium on Industrial and Embedded Systems. SIES: International Symposium on Industrial Embedded Systems 176–185.
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2011 | Journal Article | IST-REx-ID: 3318 | OA
Eggermann E, Jonas PM. 2011. How the “slow” Ca(2+) buffer parvalbumin affects transmitter release in nanodomain coupling regimes at GABAergic synapses. Nature Neuroscience. 15, 20–22.
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2011 | Conference Paper | IST-REx-ID: 3319
Quadrianto N, Lampert C. 2011. Learning multi-view neighborhood preserving projections. ICML: International Conference on Machine Learning 425–432.
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2011 | Journal Article | IST-REx-ID: 3320 | OA
Nowozin S, Lampert C. 2011. Structured learning and prediction in computer vision. Foundations and Trends in Computer Graphics and Vision. 6(3–4), 185–365.
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2011 | Conference Poster | IST-REx-ID: 3322
Lampert C. 2011. Maximum margin multi label structured prediction, Neural Information Processing Systems,p.
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2011 | Conference Paper | IST-REx-ID: 3323
Wies T, Muñiz M, Kuncak V. 2011. An efficient decision procedure for imperative tree data structures. CADE 23: Automated Deduction , LNAI , vol. 6803. 476–491.
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2011 | Conference Paper | IST-REx-ID: 3324 | OA
Piskac R, Wies T. 2011. Decision procedures for automating termination proofs. VMCAI: Verification Model Checking and Abstract Interpretation, LNCS, vol. 6538. 371–386.
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2011 | Conference Paper | IST-REx-ID: 3325
Alur R, Cerny P. 2011. Streaming transducers for algorithmic verification of single pass list processing programs. POPL: Principles of Programming Languages vol. 46. 599–610.
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2011 | Conference Paper | IST-REx-ID: 3326 | OA
Almagor S, Boker U, Kupferman O. 2011. What’s decidable about weighted automata . ATVA: Automated Technology for Verification and Analysis, LNCS, vol. 6996. 482–491.
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2011 | Conference Paper | IST-REx-ID: 3328 | OA
Berberich E, Hemmer M, Kerber M. 2011. A generic algebraic kernel for non linear geometric applications. SCG: Symposium on Computational Geometry 179–186.
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2011 | Conference Paper | IST-REx-ID: 3329 | OA
Berberich E, Halperin D, Kerber M, Pogalnikova R. 2011. Deconstructing approximate offsets. Proceedings of the twenty-seventh annual symposium on Computational geometry. SCG: Symposium on Computational Geometry 187–196.
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2011 | Conference Paper | IST-REx-ID: 3330 | OA
Kerber M, Sagraloff M. 2011. Root refinement for real polynomials. ISSAC: International Symposium on Symbolic and Algebraic Computation 209–216.
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2011 | Journal Article | IST-REx-ID: 3332 | OA
Kerber M, Sagraloff M. 2011. A note on the complexity of real algebraic hypersurfaces. Graphs and Combinatorics. 27(3), 419–430.
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2011 | Journal Article | IST-REx-ID: 3334
Edelsbrunner H, Pach J, Ziegler G. 2011. Letter from the new editors-in-chief. Discrete & Computational Geometry. 45(1), 1–2.
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2011 | Book Chapter | IST-REx-ID: 3335 | OA
Van De Weygaert R, Vegter G, Edelsbrunner H, Jones B, Pranav P, Park C, Hellwing W, Eldering B, Kruithof N, Bos P, Hidding J, Feldbrugge J, Ten Have E, Van Engelen M, Caroli M, Teillaud M. 2011. Alpha, Betti and the Megaparsec Universe: On the topology of the Cosmic Web. Transactions on Computational Science XIV. Special Issue on Voronoi Diagrams and Delaunay Triangulation, LNCS, vol. 6970. 60–101.
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2011 | Conference Paper | IST-REx-ID: 3336
Chen C, Freedman D, Lampert C. 2011. Enforcing topological constraints in random field image segmentation. CVPR: Computer Vision and Pattern Recognition. CVPR: Conference on Computer Vision and Pattern Recognition 2089–2096.
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2011 | Conference Paper | IST-REx-ID: 3337
Wang Z, Lampert C, Mülling K, Schölkopf B, Peters J. 2011. Learning anticipation policies for robot table tennis. IROS: RSJ International Conference on Intelligent Robots and Systems 332–337.
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2011 | Preprint | IST-REx-ID: 3338 | OA
Chatterjee K. 2011. Bounded rationality in concurrent parity games. arXiv., 1–51.
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2011 | Preprint | IST-REx-ID: 3339 | OA
Chatterjee K, De Alfaro L, Pritam R. 2011. Magnifying lens abstraction for stochastic games with discounted and long-run average objectives. arXiv.
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2011 | Conference Paper | IST-REx-ID: 3342 | OA
Chatterjee K, Henzinger M, Joglekar M, Nisarg S. 2011. Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives. CAV: Computer Aided Verification, LNCS, vol. 6806. 260–276.
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2011 | Conference Paper | IST-REx-ID: 3343 | OA
Chatterjee K, Henzinger M. 2011. Faster and dynamic algorithms for maximal end component decomposition and related graph problems in probabilistic verification. SODA: Symposium on Discrete Algorithms 1318–1336.
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2011 | Conference Paper | IST-REx-ID: 3344
Chatterjee K. 2011. Graph games with reachability objectives. RP: Reachability Problems, LNCS, vol. 6945. 1–1.
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2011 | Conference Paper | IST-REx-ID: 3345 | OA
Chatterjee K, Doyen L. 2011. Energy and mean-payoff parity Markov Decision Processes. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 6907. 206–218.
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2011 | Conference Paper | IST-REx-ID: 3346 | OA
Brázdil T, Brožek V, Chatterjee K, Forejt V, Kučera A. 2011. Two views on multiple mean payoff objectives in Markov Decision Processes. LICS: Logic in Computer Science
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2011 | Conference Paper | IST-REx-ID: 3347 | OA
Chatterjee K, Fijalkow N. 2011. Finitary languages. LATA: Language and Automata Theory and Applications, LNCS, vol. 6638. 216–226.
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2011 | Conference Paper | IST-REx-ID: 3348 | OA
Chatterjee K, Prabhu V. 2011. Synthesis of memory efficient real time controllers for safety objectives. HSCC: Hybrid Systems - Computation and Control 221–230.
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2011 | Conference Paper | IST-REx-ID: 3349 | OA
Chatterjee K, Fijalkow N. 2011. A reduction from parity games to simple stochastic games. GandALF: Games, Automata, Logic, and Formal Verification, EPTCS, vol. 54. 74–86.
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2011 | Conference Paper | IST-REx-ID: 3350
Chatterjee K, Majumdar R. 2011. Minimum attention controller synthesis for omega regular objectives. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, vol. 6919. 145–159.
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2011 | Conference Paper | IST-REx-ID: 3351 | OA
Chatterjee K, Doyen L, Singh R. 2011. On memoryless quantitative objectives. FCT: Fundamentals of Computation Theory, LNCS, vol. 6914. 148–159.
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2011 | Journal Article | IST-REx-ID: 3352
Fisher J, Harel D, Henzinger TA. 2011. Biology as reactivity. Communications of the ACM. 54(10), 72–82.
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2011 | Journal Article | IST-REx-ID: 3353 | OA
Tripakis S, Lickly B, Henzinger TA, Lee E. 2011. A theory of synchronous relational interfaces. ACM Transactions on Programming Languages and Systems (TOPLAS). 33(4).
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2011 | Journal Article | IST-REx-ID: 3354
Chatterjee K, De Alfaro L, Henzinger TA. 2011. Qualitative concurrent parity games. ACM Transactions on Computational Logic (TOCL). 12(4), 28.
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2011 | Conference Paper | IST-REx-ID: 3355 | OA
Halalai R, Henzinger TA, Singh V. 2011. Quantitative evaluation of BFT protocols. QEST: Quantitative Evaluation of Systems 255–264.
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2011 | Conference Paper | IST-REx-ID: 3356 | OA
Boker U, Chatterjee K, Henzinger TA, Kupferman O. 2011. Temporal specifications with accumulative values. LICS: Logic in Computer Science
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2011 | Conference Paper | IST-REx-ID: 3357
Chatterjee K, Henzinger TA, Horn F. 2011. The complexity of request-response games. LATA: Language and Automata Theory and Applications, LNCS, vol. 6638. 227–237.
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2011 | Conference Paper | IST-REx-ID: 3358 | OA
Henzinger TA, Singh V, Wies T, Zufferey D. 2011. Scheduling large jobs by abstraction refinement. EuroSys 329–342.
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2011 | Conference Paper | IST-REx-ID: 3359
Cerny P, Henzinger TA. 2011. From boolean to quantitative synthesis. EMSOFT: Embedded Software 149–154.
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2011 | Conference Paper | IST-REx-ID: 3360 | OA
Boker U, Henzinger TA. 2011. Determinizing discounted-sum automata. CSL: Computer Science Logic, LIPIcs, vol. 12. 82–96.
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2011 | Conference Paper | IST-REx-ID: 3361 | OA
Cerny P, Chatterjee K, Henzinger TA. 2011. The complexity of quantitative information flow problems. CSF: Computer Security Foundations 205–217.
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2011 | Conference Paper | IST-REx-ID: 3362 | OA
Fisher J, Henzinger TA, Nickovic D, Piterman N, Singh A, Vardi M. 2011. Dynamic reactive modules. CONCUR: Concurrency Theory, LNCS, vol. 6901. 404–418.
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2011 | Preprint | IST-REx-ID: 3363 | OA
Chatterjee K, Henzinger TA, Tracol M. The decidability frontier for probabilistic automata on infinite words.
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2011 | Journal Article | IST-REx-ID: 3364 | OA
Didier F, Henzinger TA, Mateescu M, Wolf V. 2011. Approximation of event probabilities in noisy cellular processes. Theoretical Computer Science. 412(21), 2128–2141.
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2011 | Conference Paper | IST-REx-ID: 3365 | OA
Chatterjee K, Henzinger TA, Jobstmann B, Singh R. 2011. QUASY: quantitative synthesis tool. TACAS: Tools and Algorithms for the Construction and Analysis of Systems, LNCS, vol. 6605. 267–271.
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2011 | Conference Paper | IST-REx-ID: 3366 | OA
Cerny P, Chatterjee K, Henzinger TA, Radhakrishna A, Singh R. 2011. Quantitative synthesis for concurrent programs. CAV: Computer Aided Verification, LNCS, vol. 6806. 243–259.
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2011 | Conference Paper | IST-REx-ID: 3367
Chen C, Kerber M. 2011. An output sensitive algorithm for persistent homology. SoCG: Symposium on Computational Geometry 207–216.
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2011 | Journal Article | IST-REx-ID: 3368 | OA
Krens G, Möllmert S, Heisenberg C-PJ. 2011. Enveloping cell layer differentiation at the surface of zebrafish germ layer tissue explants. PNAS. 108(3), E9–E10.
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2011 | Journal Article | IST-REx-ID: 3369
Pernia-Andrade A, Jonas PM. 2011. The multiple faces of RIM. Neuron. 69(2), 185–187.
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2011 | Journal Article | IST-REx-ID: 3370 | OA
Kupczok A. 2011. Consequences of different null models on the tree shape bias of supertree methods. Systematic Biology. 60(2), 218–225.
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2011 | Journal Article | IST-REx-ID: 3371 | OA
Sixt MK, Parent C. 2011. Cells on the move in Philadelphia. Molecular Biology and Evolution. 22(6), 724.
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2011 | Journal Article | IST-REx-ID: 3372 | OA
Abbot P et al. 2011. Inclusive fitness theory and eusociality. Nature. 471(7339), E1–E4.
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2011 | Journal Article | IST-REx-ID: 3373 | OA
Jahnel M, Behrndt M, Jannasch A, Schaeffer E, Grill S. 2011. Measuring the complete force field of an optical trap. Optics Letters. 36(7), 1260–1262.
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2011 | Journal Article | IST-REx-ID: 3374 | OA
Tkacik G, Walczak A. 2011. Information transmission in genetic regulatory networks a review. Journal of Physics: Condensed Matter. 23(15), 153102.
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2011 | Journal Article | IST-REx-ID: 3375 | OA
de Vladar H, Barton NH. 2011. The statistical mechanics of a polygenic character under stabilizing selection mutation and drift. Journal of the Royal Society Interface. 8(58), 720–739.
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2011 | Journal Article | IST-REx-ID: 3376 | OA
Bollenbach MT, Kishony R. 2011. Resolution of gene regulatory conflicts caused by combinations of antibiotics. Molecular Cell. 42(4), 413–425.
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2011 | Journal Article | IST-REx-ID: 3377 | OA
Edelsbrunner H, Morozov D, Patel A. 2011. Quantifying transversality by measuring the robustness of intersections. Foundations of Computational Mathematics. 11(3), 345–361.
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2011 | Journal Article | IST-REx-ID: 3378
Bendich P, Harer J. 2011. Persistent intersection homology. Foundations of Computational Mathematics. 11(3), 305–336.
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2011 | Journal Article | IST-REx-ID: 3379 | OA
Row R, Maître J-L, Martin B, Stockinger P, Heisenberg C-PJ, Kimelman D. 2011. Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail. Developmental Biology. 354(1), 102–110.
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2011 | Journal Article | IST-REx-ID: 3380 | OA
Logeswaran S, Barton NH. 2011. Mapping Mendelian traits in asexual progeny using changes in marker allele frequency. Genetical Research. 93(3), 221–232.
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2011 | Journal Article | IST-REx-ID: 3381 | OA
Henzinger TA, Jobstmann B, Wolf V. 2011. Formalisms for specifying Markovian population models. IJFCS: International Journal of Foundations of Computer Science. 22(4), 823–841.
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2011 | Journal Article | IST-REx-ID: 3382
Kroemer O, Lampert C, Peters J. 2011. Learning dynamic tactile sensing with robust vision based training. IEEE Transactions on Robotics. 27(3), 545–557.
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2011 | Journal Article | IST-REx-ID: 3383
Heisenberg C-PJ. 2011. Invited Lectures ‐ Symposia Area. FEBS Journal. 278(S1), 24–24.
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2011 | Journal Article | IST-REx-ID: 3384 | OA
Tkačik G, Garrigan P, Ratliff C, Milcinski G, Klein J, Seyfarth L, Sterling P, Brainard D, Balasubramanian V. 2011. Natural images from the birthplace of the human eye. PLoS One. 6(6).
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2011 | Journal Article | IST-REx-ID: 3385
Sixt MK. 2011. Interstitial locomotion of leukocytes. Immunology Letters. 138(1), 32–34.
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2011 | Journal Article | IST-REx-ID: 3386
Schrempf A, Cremer S, Heinze J. 2011. Social influence on age and reproduction reduced lifespan and fecundity in multi queen ant colonies. Journal of Evolutionary Biology. 24(7), 1455–1461.
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2011 | Journal Article | IST-REx-ID: 3387 | OA
Kupczok A. 2011. Split based computation of majority rule supertrees. BMC Evolutionary Biology. 11(205).
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2011 | Journal Article | IST-REx-ID: 3388 | OA
Ugelvig LV, Nielsen P, Boomsma J, Nash D. 2011. Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion. BMC Evolutionary Biology. 11(201).
View | Files available | DOI
 
2011 | Journal Article | IST-REx-ID: 3389
Blaschko M, Shelton J, Bartels A, Lampert C, Gretton A. 2011. Semi supervised kernel canonical correlation analysis with application to human fMRI. Pattern Recognition Letters. 32(11), 1572–1583.
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2011 | Journal Article | IST-REx-ID: 3390 | OA
Barton NH, Etheridge A. 2011. The relation between reproductive value and genetic contribution. Genetics. 188(4), 953–973.
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2011 | Journal Article | IST-REx-ID: 3391 | OA
de Vladar H, Barton NH. 2011. The contribution of statistical physics to evolutionary biology. Trends in Ecology and Evolution. 26(8), 424–432.
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2011 | Journal Article | IST-REx-ID: 3392
Soriano S, Hons M, Schumann K, Kumar V, Dennier T, Lyck R, Sixt MK, Stein J. 2011. In vivo analysis of uropod function during physiological T cell trafficking. Journal of Immunology. 187(5), 2356–2364.
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2011 | Journal Article | IST-REx-ID: 3393 | OA
Barton NH, Turelli M. 2011. Spatial waves of advance with bistable dynamics: Cytoplasmic and genetic analogues of Allee effects. American Naturalist. 178(3), E48–E75.
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2011 | Journal Article | IST-REx-ID: 3394 | OA
Polechova J, Barton NH. 2011. Genetic drift widens the expected cline but narrows the expected cline width. Genetics. 189(1), 227–235.
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2011 | Journal Article | IST-REx-ID: 3395
Palero F, Abello P, Macpherson E, Beaumont M, Pascual M. 2011. Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster Palinurus elephas . Biological Journal of the Linnean Society. 104(2), 407–418.
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2011 | Journal Article | IST-REx-ID: 3396 | OA
Stockinger P, Heisenberg C-PJ, Maître J-L. 2011. Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube. Development. 138(21), 4673–4683.
View | Files available | DOI
 
2011 | Journal Article | IST-REx-ID: 3397 | OA
Maître J-L, Heisenberg C-PJ. 2011. The role of adhesion energy in controlling cell-cell contacts. Current Opinion in Cell Biology. 23(5), 508–514.
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2011 | Journal Article | IST-REx-ID: 3399 | OA
Cremer S, Schrempf A, Heinze J. 2011. Competition and opportunity shape the reproductive tactics of males in the ant Cardiocondyla obscurior. PLoS One. 6(3).
View | Files available | DOI
 
2011 | Journal Article | IST-REx-ID: 3405 | OA
Janovjak HL, Sandoz G, Isacoff E. 2011. Modern ionotropic glutamate receptor with a K+ selectivity signature sequence. Nature Communications. 2(232), 1–6.
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2011 | Journal Article | IST-REx-ID: 3429
Plachta N, Bollenbach MT, Pease S, Fraser S, Pantazis P. 2011. Oct4 kinetics predict cell lineage patterning in the early mammalian embryo. Nature Cell Biology. 13(2), 117–123.
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2011 | Journal Article | IST-REx-ID: 3505 | OA
Sixt MK, Lämmermann T. 2011. In vitro analysis of chemotactic leukocyte migration in 3D environments. Cell Migration. 769, 149–165.
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2011 | Journal Article | IST-REx-ID: 3771
Pavan A, Martins F, Santos F, Ditchfield A, Fernandes Redondo RA. 2011. Patterns of diversification in two species of short-tailed bats (Carollia Gray, 1838): the effects of historical fragmentation of Brazilian rainforests. Biological Journal of the Linnean Society. 102(3), 527–539.
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2011 | Journal Article | IST-REx-ID: 3778 | OA
Barton NH. 2011. Estimating linkage disequilibria. Heredity. 106(2), 205–206.
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2011 | Journal Article | IST-REx-ID: 3781
Fasy BT. 2011. The difference in length of curves in R^n. Acta Sci. Math. (Szeged). 77(1–2), 359–367.
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2011 | Journal Article | IST-REx-ID: 3784 | OA
Palero F, Guerao G, Clark P, Abello P. 2011. Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description. Journal of the Marine Biological Association of the United Kingdom. 91(2), 485–492.
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