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2782 Publications

2011 | Journal Article | IST-REx-ID: 531 | OA
Verification of STM on relaxed memory models
R. Guerraoui, T.A. Henzinger, V. Singh, Formal Methods in System Design 39 (2011) 297–331.
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2011 | Journal Article | IST-REx-ID: 6496 | OA
Noise underlies switching behavior of the bacterial flagellum
H. Park, P. Oikonomou, C.C. Guet, P. Cluzel, Biophysical Journal 101 (2011) 2336–2340.
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2010 | Book Chapter | IST-REx-ID: 4339 | OA
Ist Bibliothek 2.0 überhaupt noch relevant? – Eine Einleitung in das Handbuch
J. Bergmann, P. Danowski, in:, J. Bergmann, P. Danowski (Eds.), Handbuch Bibliothek 2.0, De Gruyter, 2010, pp. 5–20.
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2010 | Book | IST-REx-ID: 4346 | OA
Handbuch Bibliothek 2.0
P. Danowski, J. Bergmann, Handbuch Bibliothek 2.0, De Gruyter, 2010.
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2010 | Conference Paper | IST-REx-ID: 4382 | OA
Transactions in the jungle
R. Guerraoui, T.A. Henzinger, M. Kapalka, V. Singh, in:, ACM, 2010, pp. 263–272.
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2010 | Conference Paper | IST-REx-ID: 4390 | OA
Model checking of linearizability of concurrent list implementations
P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, R. Alur, in:, Springer, 2010, pp. 465–479.
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2010 | Technical Report | IST-REx-ID: 5390 | OA
Topological, automata-theoretic and logical characterization of finitary languages
K. Chatterjee, N. Fijalkow, Topological, Automata-Theoretic and Logical Characterization of Finitary Languages, IST Austria, 2010.
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2010 | Technical Report | IST-REx-ID: 5391 | OA
Model checking of linearizability of concurrent list implementations
P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, R. Alur, Model Checking of Linearizability of Concurrent List Implementations, IST Austria, 2010.
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2010 | Conference Paper | IST-REx-ID: 3850
Polygonal reconstruction from approximate offsets
E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, in:, TU Dortmund, 2010, pp. 12–23.
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2010 | Conference (Editor) | IST-REx-ID: 3859
Formal modeling and analysis of timed systems
K. Chatterjee, T.A. Henzinger, eds., Formal Modeling and Analysis of Timed Systems, Springer, 2010.
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2010 | Thesis | IST-REx-ID: 3962
Dendritic cell migration across basement membranes in the skin
H. Pflicke,   Dendritic Cell Migration across Basement Membranes in the Skin, IST Austria, 2010.
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2010 | Technical Report | IST-REx-ID: 5388 | OA
Quantitative synthesis for concurrent programs
K. Chatterjee, P. Cerny, T.A. Henzinger, A. Radhakrishna, R. Singh, Quantitative Synthesis for Concurrent Programs, IST Austria, 2010.
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2010 | Journal Article | IST-REx-ID: 2409 | OA
Accuracy of phylogeny reconstruction methods combining overlapping gene data sets
A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology 5 (2010).
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2010 | Journal Article | IST-REx-ID: 3303 | OA
The rate of fitness-valley crossing in sexual populations
D. Weissman, M. Feldman, D. Fisher, Genetics 186 (2010) 1389–1410.
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2010 | Conference Paper | IST-REx-ID: 3719 | OA
Lumpability abstractions of rule-based systems
J. Feret, T.A. Henzinger, H. Koeppl, T. Petrov, in:, Open Publishing Association, 2010, pp. 142–161.
View | Files available | arXiv
 
2010 | Journal Article | IST-REx-ID: 3772 | OA
Understanding adaptation in large populations
N.H. Barton, PLoS Genetics 6 (2010).
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2010 | Journal Article | IST-REx-ID: 3773 | OA
What role does natural selection play in speciation?
N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 1825–1840.
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2010 | Journal Article | IST-REx-ID: 3774
Phenotypic correlates of hybridisation between red and sika deer (genus Cervus)
H. Senn, G. Swanson, S. Goodman, N.H. Barton, J. Pemberton, Journal of Animal Ecology 79 (2010) 414–425.
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2010 | Journal Article | IST-REx-ID: 3776 | OA
Genetic linkage and natural selection
N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 2559–2569.
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2010 | Journal Article | IST-REx-ID: 3777 | OA
Mutation and the evolution of recombination
N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 365 (2010) 1281–1294.
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2010 | Journal Article | IST-REx-ID: 3779 | OA
Cryptic variation between species and the basis of hybrid performance
U. Rosas, N.H. Barton, L. Copsey, P. Barbier De Reuille, E. Coen, PLoS Biology 8 (2010).
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2010 | Conference Paper | IST-REx-ID: 3782
Topology noise removal for curve and surface evolution
C. Chen, D. Freedman, in:, Conference Proceedings MCV 2010, Springer, 2010, pp. 31–42.
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2010 | Journal Article | IST-REx-ID: 3783
Microsatelight – Pipeline to expedite microsatellite analysis
F. Palero, F. González Candelas, M. Pascual, Journal of Heredity 102 (2010) 247–249.
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2010 | Journal Article | IST-REx-ID: 3785
Genetic diversity levels in fishery-exploited spiny lobsters of the Genus Palinurus (Decapoda: Achelata)
F. Palero, P. Abello, E. Macpherson, C. Matthee, M. Pascual, Journal of Crustacean Biology 30 (2010) 658–663.
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2010 | Journal Article | IST-REx-ID: 3787 | OA
DNA extraction from formalin-fixed tissue: new light from the deep sea
F. Palero, S. Hall, P. Clark, D. Johnston, J. Mackenzie Dodds, S. Thatje, Scientia Marina 74 (2010) 465–470.
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2010 | Journal Article | IST-REx-ID: 3788
Finite-size corrections to scaling behavior in sorted cell aggregates
A. Klopper, G. Krens, S. Grill, C.-P.J. Heisenberg, The European Physical Journal E: Soft Matter and Biological Physics 33 (2010) 99–103.
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2010 | Journal Article | IST-REx-ID: 3789
Stereotypical cell division orientation controls neural rod midline formation in zebrafish
E. Quesada-Hernández, L. Caneparo, S. Schneider, S. Winkler, M. Liebling, S. Fraser, C.-P.J. Heisenberg, Current Biology 20 (2010) 1966–1972.
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2010 | Journal Article | IST-REx-ID: 3790 | OA
Control of directed cell migration in vivo by membrane-to-cortex attachment
A. Diz Muñoz, M. Krieg, M. Bergert, I. Ibarlucea Benitez, D. Müller, E. Paluch, C.-P.J. Heisenberg, PLoS Biology 8 (2010).
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2010 | Conference Paper | IST-REx-ID: 3793 | OA
On parameter learning in CRF-based approaches to object class image segmentation
S. Nowozin, P. Gehler, C. Lampert, in:, Springer, 2010, pp. 98–111.
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2010 | Conference Paper | IST-REx-ID: 3794 View | DOI | Download None (ext.)
 
2010 | Book Chapter | IST-REx-ID: 3795 | OA
The stability of the apparent contour of an orientable 2-manifold
H. Edelsbrunner, D. Morozov, A. Patel, in:, Topological Data Analysis and Visualization: Theory, Algorithms and Applications, Springer, 2010, pp. 27–42.
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2010 | Journal Article | IST-REx-ID: 3832 | OA
Beyond TARPs: The growing list of auxiliary AMPAR subunits
J. Guzmán, P.M. Jonas, Neuron 66 (2010) 8–10.
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2010 | Journal Article | IST-REx-ID: 3833 View | DOI
 
2010 | Journal Article | IST-REx-ID: 3834 | OA
Solving the chemical master equation using sliding windows
V. Wolf, R. Goel, M. Mateescu, T.A. Henzinger, BMC Systems Biology 4 (2010) 1–19.
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2010 | Conference Paper | IST-REx-ID: 3838 | OA
Hybrid numerical solution of the chemical master equation
T.A. Henzinger, M. Mateescu, L. Mikeev, V. Wolf, in:, Springer, 2010, pp. 55–65.
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2010 | Conference Paper | IST-REx-ID: 3839 | OA
Invariant and type inference for matrices
T.A. Henzinger, T. Hottelier, L. Kovács, A. Voronkov, in:, Springer, 2010, pp. 163–179.
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2010 | Conference Paper | IST-REx-ID: 3840
From boolean to quantitative notions of correctness
T.A. Henzinger, in:, ACM, 2010, pp. 157–158.
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2010 | Journal Article | IST-REx-ID: 3604 View | DOI
 
2010 | Journal Article | IST-REx-ID: 3718
P2Y1 receptors inhibit long-term depression in the prefrontal cortex.
J. Guzmán, H. Schmidt, H. Franke, U. Krügel, J. Eilers, P. Illes, Z. Gerevich, Neuropharmacology 59 (2010) 406–415.
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2010 | Conference Paper | IST-REx-ID: 3845 | OA
Aligators for arrays
T.A. Henzinger, T. Hottelier, L. Kovács, A. Rybalchenko, in:, Springer, 2010, pp. 348–356.
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2010 | Conference Paper | IST-REx-ID: 3847 | OA
SABRE: A tool for the stochastic analysis of biochemical reaction networks
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2010, pp. 193–194.
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2010 | Conference Paper | IST-REx-ID: 3848
The robustness of level sets
P. Bendich, H. Edelsbrunner, D. Morozov, A. Patel, in:, Springer, 2010, pp. 1–10.
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2010 | Conference Paper | IST-REx-ID: 3849 | OA
Persistent homology under non-uniform error
P. Bendich, H. Edelsbrunner, M. Kerber, A. Patel, in:, Springer, 2010, pp. 12–23.
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2010 | Conference Paper | IST-REx-ID: 3851 | OA
Energy parity games
K. Chatterjee, L. Doyen, in:, Springer, 2010, pp. 599–610.
View | Files available | DOI | Download Preprint (ext.) | arXiv
 
2010 | Conference Paper | IST-REx-ID: 3852 | OA
Discounting in games across time scales
K. Chatterjee, R. Majumdar, in:, EPTCS, 2010, pp. 22–29.
View | Files available | DOI | arXiv
 
2010 | Conference Paper | IST-REx-ID: 3853 | OA
Mean-payoff automaton expressions
K. Chatterjee, L. Doyen, H. Edelsbrunner, T.A. Henzinger, P. Rannou, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 269–283.
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2010 | Conference Paper | IST-REx-ID: 3854
Obliging games
K. Chatterjee, F. Horn, C. Löding, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 284–296.
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2010 | Journal Article | IST-REx-ID: 3842 | OA
Fast adaptive uniformization of the chemical master equation
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, IET Systems Biology 4 (2010) 441–452.
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2010 | Conference Paper | IST-REx-ID: 3855 | OA
Qualitative analysis of partially-observable Markov Decision Processes
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2010, pp. 258–269.
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2010 | Conference Paper | IST-REx-ID: 3864 | OA
Measuring and synthesizing systems in probabilistic environments
K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, in:, Springer, 2010, pp. 380–395.
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2010 | Conference Paper | IST-REx-ID: 3865
Analyzing the impact of change in multi-threaded programs
K. Chatterjee, L. De Alfaro, V. Raman, C. Sánchez, in:, D. Rosenblum, G. Taenzer (Eds.), Springer, 2010, pp. 293–307.
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2010 | Conference Paper | IST-REx-ID: 3866 | OA
Robustness in the presence of liveness
R. Bloem, K. Chatterjee, K. Greimel, T.A. Henzinger, B. Jobstmann, in:, T. Touili, B. Cook, P. Jackson (Eds.), Springer, 2010, pp. 410–424.
View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 3857
Probabilistic Automata on infinite words: decidability and undecidability results
K. Chatterjee, T.A. Henzinger, in:, Springer, 2010, pp. 1–16.
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2010 | Conference Paper | IST-REx-ID: 3858 | OA
The complexity of partial-observation parity games
K. Chatterjee, L. Doyen, in:, Springer, 2010, pp. 1–14.
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2010 | Conference Paper | IST-REx-ID: 3860 | OA
Generalized mean-payoff and energy games
K. Chatterjee, L. Doyen, T.A. Henzinger, J. Raskin, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 505–516.
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2010 | Journal Article | IST-REx-ID: 3863 | OA
Strategy construction for parity games with imperfect information
D. Berwanger, K. Chatterjee, M. De Wulf, L. Doyen, T.A. Henzinger, Information and Computation 208 (2010) 1206–1220.
View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 3856 | OA
Randomness for free
K. Chatterjee, L. Doyen, H. Gimbert, T.A. Henzinger, in:, Springer, 2010, pp. 246–257.
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2010 | Journal Article | IST-REx-ID: 3861 | OA
Strategy logic
K. Chatterjee, T.A. Henzinger, N. Piterman, Information and Computation 208 (2010) 677–693.
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2010 | Journal Article | IST-REx-ID: 3868 | OA
Algorithms for game metrics
K. Chatterjee, L. De Alfaro, R. Majumdar, V. Raman, Logical Methods in Computer Science 6 (2010) 1–27.
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2010 | Journal Article | IST-REx-ID: 3901 | OA
Computing robustness and persistence for images
P. Bendich, H. Edelsbrunner, M. Kerber, IEEE Transactions of Visualization and Computer Graphics 16 (2010) 1251–1260.
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2010 | Journal Article | IST-REx-ID: 4134
Why is adaptation prevented at ecological margins? New insights from individual-based simulations
J. Bridle, J. Polechova, M. Kawata, R. Butlin, Ecology Letters 13 (2010) 485–494.
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2010 | Journal Article | IST-REx-ID: 4157 | OA
Spatial organization of adhesion: force-dependent regulation and function in tissue morphogenesis
E. Papusheva, C.-P.J. Heisenberg, EMBO Journal 29 (2010) 2753–2768.
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2010 | Journal Article | IST-REx-ID: 3867 | OA
Expressiveness and closure properties for quantitative languages
K. Chatterjee, L. Doyen, T.A. Henzinger, Logical Methods in Computer Science 6 (2010) 1–23.
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2010 | Journal Article | IST-REx-ID: 4243 | OA
A new model for evolution in a spatial continuum
N.H. Barton, A. Etheridge, A. Véber, Electronic Journal of Probability 15 (2010) 162–216.
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2010 | Conference Paper | IST-REx-ID: 4393 | OA
Simulation distances
P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 235–268.
View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 4396 | OA
Shape refinement through explicit heap analysis
D. Beyer, T.A. Henzinger, G. Théoduloz, D. Zufferey, in:, D. Rosenblum, G. Taenzer (Eds.), Springer, 2010, pp. 263–277.
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2010 | Conference Paper | IST-REx-ID: 4361 | OA
Forward analysis of depth-bounded processes
T. Wies, D. Zufferey, T.A. Henzinger, in:, L. Ong (Ed.), Springer, 2010, pp. 94–108.
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2010 | Conference Paper | IST-REx-ID: 4362
Runtime verification for software transactional memories
V. Singh, in:, O. Sokolsky, G. Rosu, N. Tilmann, H. Barringer, Y. Falcone, B. Finkbeiner, K. Havelund, I. Lee, G. Pace (Eds.), Springer, 2010, pp. 421–435.
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2010 | Conference Paper | IST-REx-ID: 4369 | OA
From MTL to deterministic timed automata
D. Nickovic, N. Piterman, in:, T.A. Henzinger, K. Chatterjee (Eds.), Springer, 2010, pp. 152–167.
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2010 | Conference Paper | IST-REx-ID: 4378 | OA
Building a calculus of data structures
V. Kuncak, R. Piskac, P. Suter, T. Wies, in:, G. Barthe, M. Hermenegildo (Eds.), Springer, 2010, pp. 26–44.
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2010 | Conference Paper | IST-REx-ID: 4388 | OA
GIST: A solver for probabilistic games
K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, in:, Springer, 2010, pp. 665–669.
View | Files available | DOI | arXiv
 
2010 | Conference Paper | IST-REx-ID: 4389 | OA
Robustness of sequential circuits
L. Doyen, T.A. Henzinger, A. Legay, D. Nickovic, in:, IEEE, 2010, pp. 77–84.
View | Files available | DOI
 
2010 | Book Chapter | IST-REx-ID: 4392
Quantitative Simulation Games
P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Z. Manna, D. Peled (Eds.), Time For Verification: Essays in Memory of Amir Pnueli, Springer, 2010, pp. 42–60.
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2010 | Conference Paper | IST-REx-ID: 4380 | OA
A marketplace for cloud resources
T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, ACM, 2010, pp. 1–8.
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2010 | Conference Paper | IST-REx-ID: 4381 | OA
FlexPRICE: Flexible provisioning of resources in a cloud environment
T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, IEEE, 2010, pp. 83–90.
View | Files available | DOI
 
2010 | Technical Report | IST-REx-ID: 5389 | OA
Simulation distances
P. Cerny, T.A. Henzinger, A. Radhakrishna, Simulation Distances, IST Austria, 2010.
View | Files available | DOI
 
2010 | Journal Article | IST-REx-ID: 474
A new model for extinction and recolonization in two dimensions: Quantifying phylogeography
N.H. Barton, J. Kelleher, A. Etheridge, Evolution 64 (2010) 2701–2715.
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2010 | Conference Paper | IST-REx-ID: 488 | OA
Expressiveness of streaming string transducers
R. Alur, P. Cerny, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 1–12.
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2010 | Conference Paper | IST-REx-ID: 489 | OA
How do we remember the past in randomised strategies?
J. Cristau, C. David, F. Horn, in:, Proceedings of GandALF 2010, Open Publishing Association, 2010, pp. 30–39.
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2010 | Journal Article | IST-REx-ID: 533
Doomed program points
J. Hoenicke, K. Leino, A. Podelski, M. Schäf, T. Wies, Formal Methods in System Design 37 (2010) 171–199.
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2009 | Conference Paper | IST-REx-ID: 4569 | OA
Better quality in synthesis through quantitative objectives
R. Bloem, K. Chatterjee, T.A. Henzinger, B. Jobstmann, in:, Springer, 2009, pp. 140–156.
View | DOI | Download Preprint (ext.) | arXiv
 
2009 | Technical Report | IST-REx-ID: 5394 | OA
Improved lower bounds for request-response and finitary Streett games
K. Chatterjee, T.A. Henzinger, F. Horn, Improved Lower Bounds for Request-Response and Finitary Streett Games, IST Austria, 2009.
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2009 | Conference Paper | IST-REx-ID: 3837 | OA
On relational interfaces
S. Tripakis, B. Lickly, T.A. Henzinger, E. Lee, in:, EMSOFT ’09 Proceedings of the Seventh ACM International Conference on Embedded Software, ACM, 2009, pp. 67–76.
View | Files available | DOI
 
2009 | Conference Paper | IST-REx-ID: 3844 | OA
Distributed, modular HTL
T.A. Henzinger, C. Kirsch, E. Marques, A. Sokolova, in:, IEEE, 2009, pp. 171–180.
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2009 | Journal Article | IST-REx-ID: 3775 | OA
On the application of statistical physics to evolutionary biology
N.H. Barton, J. Coe, Journal of Theoretical Biology 259 (2009) 317–324.
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2009 | Journal Article | IST-REx-ID: 3780 | OA View | Files available | DOI
 
2009 | Book Chapter | IST-REx-ID: 3675
Why sex and recombination?
N.H. Barton, in:, Cold Spring Harbor Symposia on Quantitative Biology, Cold Spring Harbor Laboratory Press, 2009, pp. 187–195.
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2009 | Conference Paper | IST-REx-ID: 3843 | OA
Fast adaptive uniformization of the chemical master equation
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2009, pp. 118–127.
View | Files available | DOI
 
2009 | Technical Report | IST-REx-ID: 5395 | OA
Qualitative analysis of partially-observable Markov decision processes
K. Chatterjee, L. Doyen, T.A. Henzinger, Qualitative Analysis of Partially-Observable Markov Decision Processes, IST Austria, 2009.
View | Files available | DOI
 
2009 | Conference Paper | IST-REx-ID: 3841 | OA
Formalisms for specifying Markovian population models
T.A. Henzinger, B. Jobstmann, V. Wolf, in:, Springer, 2009, pp. 3–23.
View | Files available | DOI
 
2009 | Technical Report | IST-REx-ID: 5392 | OA
Probabilistic automata on infinite words: Decidability and undecidability results
K. Chatterjee, Probabilistic Automata on Infinite Words: Decidability and Undecidability Results, IST Austria, 2009.
View | Files available | DOI
 
2009 | Journal Article | IST-REx-ID: 3870 | OA
Finitary winning in omega-regular games
K. Chatterjee, T.A. Henzinger, F. Horn, ACM Transactions on Computational Logic (TOCL) 11 (2009).
View | Files available | DOI
 
2009 | Conference Paper | IST-REx-ID: 3871 | OA
Probabilistic weighted automata
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 244–258.
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2009 | Conference Paper | IST-REx-ID: 3968 | OA
The persistent Morse complex segmentation of a 3-manifold
H. Edelsbrunner, J. Harer, in:, Springer, 2009, pp. 36–50.
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2009 | Journal Article | IST-REx-ID: 4136 | OA
Species' range: Adaptation in space and time
J. Polechova, N.H. Barton, G. Marion, American Naturalist 174 (2009) E186–E204.
View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2009 | Journal Article | IST-REx-ID: 4231
Statistical mechanics and the evolution of polygenic quantitative traits
N.H. Barton, H. De Vladar, Genetics 181 (2009) 997–1011.
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2009 | Journal Article | IST-REx-ID: 4242 | OA
The evolution of strong reproductive isolation
N.H. Barton, M. De Cara, Evolution; International Journal of Organic Evolution 63 (2009) 1171–1190.
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2009 | Technical Report | IST-REx-ID: 5393 | OA
Gist: A solver for probabilistic games
K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, Gist: A Solver for Probabilistic Games, IST Austria, 2009.
View | Files available | DOI
 
2009 | Conference Paper | IST-REx-ID: 4542 | OA
Alternating weighted automata
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 3–13.
View | Files available | DOI
 
2009 | Conference Paper | IST-REx-ID: 4543
Stochastic games with finitary objectives
K. Chatterjee, T.A. Henzinger, F. Horn, in:, Springer, 2009, pp. 34–54.
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