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2684 Publications

2011 | Technical Report | IST-REx-ID: 5380   OA
Bounded rationality in concurrent parity games
K. Chatterjee, Bounded Rationality in Concurrent Parity Games, IST Austria, 2011.
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2011 | Journal Article | IST-REx-ID: 6496   OA
Noise underlies switching behavior of the bacterial flagellum
H. Park, P. Oikonomou, C.C. Guet, P. Cluzel, Biophysical Journal 101 (2011) 2336–2340.
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2011 | Conference Paper | IST-REx-ID: 3346   OA
Two views on multiple mean payoff objectives in Markov Decision Processes
T. Brázdil, V. Brožek, K. Chatterjee, V. Forejt, A. Kučera, in:, IEEE, 2011.
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2011 | Journal Article | IST-REx-ID: 3353   OA
A theory of synchronous relational interfaces
S. Tripakis, B. Lickly, T.A. Henzinger, E. Lee, ACM Transactions on Programming Languages and Systems (TOPLAS) 33 (2011).
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2011 | Conference Paper | IST-REx-ID: 3264
Solving recursion-free Horn clauses over LI+UIF
A. Gupta, C. Popeea, A. Rybalchenko, in:, H. Yang (Ed.), Springer, 2011, pp. 188–203.
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2011 | Conference Paper | IST-REx-ID: 3360   OA
Determinizing discounted-sum automata
U. Boker, T.A. Henzinger, in:, Springer, 2011, pp. 82–96.
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2011 | Technical Report | IST-REx-ID: 5385
Temporal specifications with accumulative values
U. Boker, K. Chatterjee, T.A. Henzinger, O. Kupferman, Temporal Specifications with Accumulative Values, IST Austria, 2011.
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2011 | Journal Article | IST-REx-ID: 531   OA
Verification of STM on relaxed memory models
R. Guerraoui, T.A. Henzinger, V. Singh, Formal Methods in System Design 39 (2011) 297–331.
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2011 | Conference Paper | IST-REx-ID: 3358   OA
Scheduling large jobs by abstraction refinement
T.A. Henzinger, V. Singh, T. Wies, D. Zufferey, in:, ACM, 2011, pp. 329–342.
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2011 | Journal Article | IST-REx-ID: 3269   OA
Perceptual global illumination cancellation in complex projection environments
Y. Sheng, B. Cutler, C. Chen, J. Nasman, Computer Graphics Forum 30 (2011) 1261–1268.
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2011 | Journal Article | IST-REx-ID: 3505   OA
In vitro analysis of chemotactic leukocyte migration in 3D environments
M.K. Sixt, T. Lämmermann, Cell Migration 769 (2011) 149–165.
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2011 | Book Chapter | IST-REx-ID: 3311
Alpha shapes - a survey
H. Edelsbrunner, in:, Tessellations in the Sciences, Springer, 2011.
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2011 | Conference Paper | IST-REx-ID: 3330   OA
Root refinement for real polynomials
M. Kerber, M. Sagraloff, in:, Springer, 2011, pp. 209–216.
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2011 | Book Chapter | IST-REx-ID: 3335   OA
Alpha, Betti and the Megaparsec Universe: On the topology of the Cosmic Web
R. Van De Weygaert, G. Vegter, H. Edelsbrunner, B. Jones, P. Pranav, C. Park, W. Hellwing, B. Eldering, N. Kruithof, P. Bos, J. Hidding, J. Feldbrugge, E. Ten Have, M. Van Engelen, M. Caroli, M. Teillaud, in:, M. Gavrilova, K. Tan, M. Mostafavi (Eds.), Transactions on Computational Science XIV, Springer, 2011, pp. 60–101.
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2011 | Book Chapter | IST-REx-ID: 3791
Cell sorting in development
G. Krens, C.-P.J. Heisenberg, in:, M. Labouesse (Ed.), Current Topics in Developmental Biology, Elsevier, 2011, pp. 189–213.
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2011 | Book Chapter | IST-REx-ID: 3796   OA
Covering and packing with spheres by diagonal distortion in R^n
H. Edelsbrunner, M. Kerber, in:, C. Calude, G. Rozenberg, A. Salomaa (Eds.), Rainbow of Computer Science, Springer, 2011, pp. 20–35.
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2011 | Journal Article | IST-REx-ID: 3385
Interstitial locomotion of leukocytes
M.K. Sixt, Immunology Letters 138 (2011) 32–34.
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2011 | Journal Article | IST-REx-ID: 3392
In vivo analysis of uropod function during physiological T cell trafficking
S. Soriano, M. Hons, K. Schumann, V. Kumar, T. Dennier, R. Lyck, M.K. Sixt, J. Stein, Journal of Immunology 187 (2011) 2356–2364.
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2011 | Journal Article | IST-REx-ID: 3397   OA
The role of adhesion energy in controlling cell-cell contacts
J.-L. Maître, C.-P.J. Heisenberg, Current Opinion in Cell Biology 23 (2011) 508–514.
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2011 | Journal Article | IST-REx-ID: 3405   OA
Modern ionotropic glutamate receptor with a K+ selectivity signature sequence
H.L. Janovjak, G. Sandoz, E. Isacoff, Nature Communications 2 (2011) 1–6.
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2011 | Journal Article | IST-REx-ID: 3429
Oct4 kinetics predict cell lineage patterning in the early mammalian embryo
N. Plachta, M.T. Bollenbach, S. Pease, S. Fraser, P. Pantazis, Nature Cell Biology 13 (2011) 117–123.
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2011 | Journal Article | IST-REx-ID: 3373   OA
Measuring the complete force field of an optical trap
M. Jahnel, M. Behrndt, A. Jannasch, E. Schaeffer, S. Grill, Optics Letters 36 (2011) 1260–1262.
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2011 | Journal Article | IST-REx-ID: 3378
Persistent intersection homology
P. Bendich, J. Harer, Foundations of Computational Mathematics 11 (2011) 305–336.
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2011 | Technical Report | IST-REx-ID: 5386   OA
Enforcing topological constraints in random field image segmentation
C. Chen, D. Freedman, C. Lampert, Enforcing Topological Constraints in Random Field Image Segmentation, IST Austria, 2011.
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2011 | Conference Paper | IST-REx-ID: 3323
An efficient decision procedure for imperative tree data structures
T. Wies, M. Muñiz, V. Kuncak, in:, Springer, 2011, pp. 476–491.
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2011 | Technical Report | IST-REx-ID: 5381
Partial-observation stochastic games: How to win when belief fails
K. Chatterjee, L. Doyen, Partial-Observation Stochastic Games: How to Win When Belief Fails, IST Austria, 2011.
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2011 | Conference Paper | IST-REx-ID: 3366   OA
Quantitative synthesis for concurrent programs
P. Cerny, K. Chatterjee, T.A. Henzinger, A. Radhakrishna, R. Singh, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 243–259.
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2011 | Conference Paper | IST-REx-ID: 3359
From boolean to quantitative synthesis
P. Cerny, T.A. Henzinger, in:, ACM, 2011, pp. 149–154.
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2011 | Conference Paper | IST-REx-ID: 3361   OA
The complexity of quantitative information flow problems
P. Cerny, K. Chatterjee, T.A. Henzinger, in:, IEEE, 2011, pp. 205–217.
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2011 | Conference Paper | IST-REx-ID: 3347   OA
Finitary languages
K. Chatterjee, N. Fijalkow, in:, Springer, 2011, pp. 216–226.
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2011 | Journal Article | IST-REx-ID: 3354
Qualitative concurrent parity games
K. Chatterjee, L. De Alfaro, T.A. Henzinger, ACM Transactions on Computational Logic (TOCL) 12 (2011).
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2011 | Technical Report | IST-REx-ID: 5379
An O(n2) time algorithm for alternating Büchi games
K. Chatterjee, M. Henzinger, An O(N2) Time Algorithm for Alternating Büchi Games, IST Austria, 2011.
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2011 | Conference Paper | IST-REx-ID: 3342
Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives
K. Chatterjee, M. Henzinger, M. Joglekar, S. Nisarg, in:, G. Gopalakrishnan, S. Qadeer (Eds.), Springer, 2011, pp. 260–276.
View | Files available | DOI | Download (ext.) | arXiv
 
2011 | Journal Article | IST-REx-ID: 518   OA
CAMTA1 is a novel tumour suppressor regulated by miR-9/9 * in glioblastoma stem cells
D. Schraivogel, L. Weinmann, D. Beier, G. Tabatabai, A. Eichner, J. Zhu, M. Anton, M.K. Sixt, M. Weller, C. Beier, G. Meister, EMBO Journal 30 (2011) 4309–4322.
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2011 | Conference Paper | IST-REx-ID: 3316   OA
Specification-centered robustness
R. Bloem, K. Chatterjee, K. Greimel, T.A. Henzinger, B. Jobstmann, in:, 6th IEEE International Symposium on Industrial and Embedded Systems, IEEE, 2011, pp. 176–185.
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2011 | Conference Paper | IST-REx-ID: 3328   OA
A generic algebraic kernel for non linear geometric applications
E. Berberich, M. Hemmer, M. Kerber, in:, ACM, 2011, pp. 179–186.
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2011 | Journal Article | IST-REx-ID: 3380   OA
Mapping Mendelian traits in asexual progeny using changes in marker allele frequency
S. Logeswaran, N.H. Barton, Genetical Research 93 (2011) 221–232.
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2011 | Journal Article | IST-REx-ID: 3784   OA
Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description
F. Palero, G. Guerao, P. Clark, P. Abello, Journal of the Marine Biological Association of the United Kingdom 91 (2011) 485–492.
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2011 | Conference Paper | IST-REx-ID: 3266
Probabilistic joint image segmentation and labeling
A. Ion, J. Carreira, C. Sminchisescu, in:, NIPS Proceedings, Neural Information Processing Systems Foundation, 2011, pp. 1827–1835.
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2011 | Thesis | IST-REx-ID: 3273
Mechanics of adhesion and de‐adhesion in zebrafish germ layer progenitors
J.-L. Maître, Mechanics of Adhesion and De‐adhesion in Zebrafish Germ Layer Progenitors, IST Austria, 2011.
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2011 | Conference Paper | IST-REx-ID: 3297   OA
Liquid simulation with mesh-based surface tracking
C.J. Wojtan, M. Müller Fischer, T. Brochu, in:, ACM, 2011.
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2011 | Conference Paper | IST-REx-ID: 3324   OA
Decision procedures for automating termination proofs
R. Piskac, T. Wies, in:, R. Jhala, D. Schmidt (Eds.), Springer, 2011, pp. 371–386.
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2011 | Conference Paper | IST-REx-ID: 3329   OA
Deconstructing approximate offsets
E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, in:, Proceedings of the Twenty-Seventh Annual Symposium on Computational Geometry, ACM, 2011, pp. 187–196.
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2011 | Conference Paper | IST-REx-ID: 3355   OA
Quantitative evaluation of BFT protocols
R. Halalai, T.A. Henzinger, V. Singh, in:, IEEE, 2011, pp. 255–264.
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2011 | Conference Paper | IST-REx-ID: 3343   OA View | DOI | Download (ext.)
 
2011 | Journal Article | IST-REx-ID: 3778   OA
Estimating linkage disequilibria
N.H. Barton, Heredity 106 (2011) 205–206.
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2011 | Journal Article | IST-REx-ID: 3386
Social influence on age and reproduction reduced lifespan and fecundity in multi queen ant colonies
A. Schrempf, S. Cremer, J. Heinze, Journal of Evolutionary Biology 24 (2011) 1455–1461.
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2011 | Journal Article | IST-REx-ID: 3393   OA
Spatial waves of advance with bistable dynamics: Cytoplasmic and genetic analogues of Allee effects
N.H. Barton, M. Turelli, American Naturalist 178 (2011) E48–E75.
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2011 | Journal Article | IST-REx-ID: 3374   OA
Information transmission in genetic regulatory networks a review
G. Tkacik, A. Walczak, Journal of Physics: Condensed Matter 23 (2011).
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2011 | Journal Article | IST-REx-ID: 3379   OA
Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail
R. Row, J.-L. Maître, B. Martin, P. Stockinger, C.-P.J. Heisenberg, D. Kimelman, Developmental Biology 354 (2011) 102–110.
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2011 | Journal Article | IST-REx-ID: 3381
Formalisms for specifying Markovian population models
T.A. Henzinger, B. Jobstmann, V. Wolf, IJFCS: International Journal of Foundations of Computer Science 22 (2011) 823–841.
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2011 | Conference Paper | IST-REx-ID: 3336
Enforcing topological constraints in random field image segmentation
C. Chen, D. Freedman, C. Lampert, in:, CVPR: Computer Vision and Pattern Recognition, IEEE, 2011, pp. 2089–2096.
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2011 | Conference Paper | IST-REx-ID: 3348   OA
Synthesis of memory efficient real time controllers for safety objectives
K. Chatterjee, V. Prabhu, in:, Springer, 2011, pp. 221–230.
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2011 | Conference Paper | IST-REx-ID: 3350
Minimum attention controller synthesis for omega regular objectives
K. Chatterjee, R. Majumdar, in:, U. Fahrenberg, S. Tripakis (Eds.), Springer, 2011, pp. 145–159.
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2011 | Technical Report | IST-REx-ID: 5382
Robustness of structurally equivalent concurrent parity games
K. Chatterjee, Robustness of Structurally Equivalent Concurrent Parity Games, IST Austria, 2011.
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2011 | Technical Report | IST-REx-ID: 5387
Energy and mean-payoff parity Markov decision processes
K. Chatterjee, L. Doyen, Energy and Mean-Payoff Parity Markov Decision Processes, IST Austria, 2011.
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2011 | Conference Poster | IST-REx-ID: 3312   OA
Detailed reconstruction of 3D plant root shape
Y. Zheng, S. Gu, H. Edelsbrunner, C. Tomasi, P. Benfey, Detailed Reconstruction of 3D Plant Root Shape, IEEE, 2011.
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2011 | Conference Paper | IST-REx-ID: 3367
An output sensitive algorithm for persistent homology
C. Chen, M. Kerber, in:, ACM, 2011, pp. 207–216.
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2011 | Conference Paper | IST-REx-ID: 3362   OA
Dynamic reactive modules
J. Fisher, T.A. Henzinger, D. Nickovic, N. Piterman, A. Singh, M. Vardi, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2011, pp. 404–418.
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2011 | Journal Article | IST-REx-ID: 3267
Hardness results for homology localization
C. Chen, D. Freedman, Discrete & Computational Geometry 45 (2011) 425–448.
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2011 | Conference Paper | IST-REx-ID: 3298   OA
Hybrid smoothed particle hydrodynamics
K. Raveendran, C.J. Wojtan, G. Turk, in:, S. Spencer (Ed.), ACM, 2011, pp. 33–42.
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2011 | Conference Paper | IST-REx-ID: 3301   OA
Tail approximation for the chemical master equation
T.A. Henzinger, M. Mateescu, in:, Tampere International Center for Signal Processing, 2011.
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2011 | Conference Paper | IST-REx-ID: 3313   OA
Diffusion runs low on persistence fast
C. Chen, H. Edelsbrunner, in:, Proceedings of the IEEE International Conference on Computer Vision, IEEE, 2011.
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2011 | Journal Article | IST-REx-ID: 3318   OA View | DOI | Download (ext.)
 
2011 | Conference Paper | IST-REx-ID: 3325 View | DOI
 
2011 | Journal Article | IST-REx-ID: 3382
Learning dynamic tactile sensing with robust vision based training
O. Kroemer, C. Lampert, J. Peters, IEEE Transactions on Robotics 27 (2011) 545–557.
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2011 | Journal Article | IST-REx-ID: 3387   OA
Split based computation of majority rule supertrees
A. Kupczok, BMC Evolutionary Biology 11 (2011).
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2011 | Journal Article | IST-REx-ID: 3394   OA
Genetic drift widens the expected cline but narrows the expected cline width
J. Polechova, N.H. Barton, Genetics 189 (2011) 227–235.
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2011 | Journal Article | IST-REx-ID: 3399   OA View | Files available | DOI
 
2011 | Journal Article | IST-REx-ID: 3368   OA
Enveloping cell layer differentiation at the surface of zebrafish germ layer tissue explants
G. Krens, S. Möllmert, C.-P.J. Heisenberg, PNAS 108 (2011) E9–E10.
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2011 | Journal Article | IST-REx-ID: 3370   OA
Consequences of different null models on the tree shape bias of supertree methods
A. Kupczok, Systematic Biology 60 (2011) 218–225.
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2011 | Journal Article | IST-REx-ID: 3375   OA
The statistical mechanics of a polygenic character under stabilizing selection mutation and drift
H. de Vladar, N.H. Barton, Journal of the Royal Society Interface 8 (2011) 720–739.
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2011 | Conference Paper | IST-REx-ID: 3337
Learning anticipation policies for robot table tennis
Z. Wang, C. Lampert, K. Mülling, B. Schölkopf, J. Peters, in:, IEEE, 2011, pp. 332–337.
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2011 | Conference Paper | IST-REx-ID: 3344
Graph games with reachability objectives
K. Chatterjee, in:, G. Delzanno, I. Potapov (Eds.), Springer, 2011, pp. 1–1.
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2011 | Journal Article | IST-REx-ID: 3781
The difference in length of curves in R^n
B.T. Fasy, Acta Sci. Math. (Szeged) 77 (2011) 359–367.
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2011 | Journal Article | IST-REx-ID: 490   OA
BioSig: The free and open source software library for biomedical signal processing
A. Schlögl, C. Vidaurre, T. Sander, Computational Intelligence and Neuroscience 2011 (2011).
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2011 | Journal Article | IST-REx-ID: 469   OA
Spontaneous glutamate release is independent of calcium influx and tonically activated by the calcium-sensing receptor
N. Vyleta, S. Smith, European Journal of Neuroscience 31 (2011) 4593–4606.
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2011 | Technical Report | IST-REx-ID: 5383   OA
On an efficient decision procedure for imperative tree data structures
T. Wies, M. Muñiz, V. Kuncak, On an Efficient Decision Procedure for Imperative Tree Data Structures, IST Austria, 2011.
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2011 | Preprint | IST-REx-ID: 3363   OA
The decidability frontier for probabilistic automata on infinite words
K. Chatterjee, T.A. Henzinger, M. Tracol, (n.d.).
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2011 | Conference Paper | IST-REx-ID: 3349   OA
A reduction from parity games to simple stochastic games
K. Chatterjee, N. Fijalkow, in:, EPTCS, 2011, pp. 74–86.
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2011 | Conference Paper | IST-REx-ID: 3351   OA
On memoryless quantitative objectives
K. Chatterjee, L. Doyen, R. Singh, in:, O. Owe, M. Steffen, J.A. Telle (Eds.), Springer, 2011, pp. 148–159.
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2011 | Conference Paper | IST-REx-ID: 3356
Temporal specifications with accumulative values
U. Boker, K. Chatterjee, T.A. Henzinger, O. Kupferman, in:, IEEE, 2011.
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2011 | Journal Article | IST-REx-ID: 3320   OA
Structured learning and prediction in computer vision
S. Nowozin, C. Lampert, Foundations and Trends in Computer Graphics and Vision 6 (2011) 185–365.
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2011 | Journal Article | IST-REx-ID: 3332   OA
A note on the complexity of real algebraic hypersurfaces
M. Kerber, M. Sagraloff, Graphs and Combinatorics 27 (2011) 419–430.
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2010 | Conference Paper | IST-REx-ID: 3782
Topology noise removal for curve and surface evolution
C. Chen, D. Freedman, in:, Conference Proceedings MCV 2010, Springer, 2010, pp. 31–42.
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2010 | Journal Article | IST-REx-ID: 3787   OA
DNA extraction from formalin-fixed tissue: new light from the deep sea
F. Palero, S. Hall, P. Clark, D. Johnston, J. Mackenzie Dodds, S. Thatje, Scientia Marina 74 (2010) 465–470.
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2010 | Conference Paper | IST-REx-ID: 3794 View | DOI | Download (ext.)
 
2010 | Journal Article | IST-REx-ID: 3718
P2Y1 receptors inhibit long-term depression in the prefrontal cortex.
J. Guzmán, H. Schmidt, H. Franke, U. Krügel, J. Eilers, P. Illes, Z. Gerevich, Neuropharmacology 59 (2010) 406–415.
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2010 | Journal Article | IST-REx-ID: 3833 View | DOI
 
2010 | Conference Paper | IST-REx-ID: 3838   OA
Hybrid numerical solution of the chemical master equation
T.A. Henzinger, M. Mateescu, L. Mikeev, V. Wolf, in:, Springer, 2010, pp. 55–65.
View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 3840
From boolean to quantitative notions of correctness
T.A. Henzinger, in:, ACM, 2010, pp. 157–158.
View | DOI
 
2010 | Conference Paper | IST-REx-ID: 3852   OA
Discounting in games across time scales
K. Chatterjee, R. Majumdar, in:, EPTCS, 2010, pp. 22–29.
View | Files available | DOI | arXiv
 
2010 | Conference Paper | IST-REx-ID: 3845   OA
Aligators for arrays
T.A. Henzinger, T. Hottelier, L. Kovács, A. Rybalchenko, in:, Springer, 2010, pp. 348–356.
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2010 | Journal Article | IST-REx-ID: 4134
Why is adaptation prevented at ecological margins? New insights from individual-based simulations
J. Bridle, J. Polechova, M. Kawata, R. Butlin, Ecology Letters 13 (2010) 485–494.
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2010 | Conference Paper | IST-REx-ID: 4362
Runtime verification for software transactional memories
V. Singh, in:, O. Sokolsky, G. Rosu, N. Tilmann, H. Barringer, Y. Falcone, B. Finkbeiner, K. Havelund, I. Lee, G. Pace (Eds.), Springer, 2010, pp. 421–435.
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2010 | Conference Paper | IST-REx-ID: 4381   OA
FlexPRICE: Flexible provisioning of resources in a cloud environment
T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, IEEE, 2010, pp. 83–90.
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2010 | Conference Paper | IST-REx-ID: 489   OA
How do we remember the past in randomised strategies?
J. Cristau, C. David, F. Horn, in:, Proceedings of GandALF 2010, Open Publishing Association, 2010, pp. 30–39.
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2010 | Conference Paper | IST-REx-ID: 3857
Probabilistic Automata on infinite words: decidability and undecidability results
K. Chatterjee, T.A. Henzinger, in:, Springer, 2010, pp. 1–16.
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2010 | Conference Paper | IST-REx-ID: 3864
Measuring and synthesizing systems in probabilistic environments
K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, in:, Springer, 2010, pp. 380–395.
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2010 | Conference Paper | IST-REx-ID: 4393
Simulation distances
P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 235–268.
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