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2742 Publications

2012 | Journal Article | IST-REx-ID: 3118   OA
Tracking surfaces with evolving topology
M. Bojsen-Hansen, H. Li, C.J. Wojtan, ACM Transactions on Graphics 31 (2012).
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2012 | Journal Article | IST-REx-ID: 3120   OA
Fano 3 folds in codimension 4 Tom and Jerry Part I
G. Brown, M. Kerber, M. Reid, Compositio Mathematica 148 (2012) 1171–1194.
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2012 | Journal Article | IST-REx-ID: 3132
Two pathways ensuring social harmony
M. Konrad, T. Pamminger, S. Foitzik, Naturwissenschaften 99 (2012) 627–636.
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2012 | Journal Article | IST-REx-ID: 3245
Spurred by resistance mechanosensation in collective migration
M. Behrndt, C.-P.J. Heisenberg, Developmental Cell 22 (2012) 3–4.
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2012 | Journal Article | IST-REx-ID: 3257   OA
Generalized roof duality and bisubmodular functions
V. Kolmogorov, Discrete Applied Mathematics 160 (2012) 416–426.
View | Files available | DOI | Download (ext.) | arXiv
 
2012 | Journal Article | IST-REx-ID: 3310   OA
A point calculus for interlevel set homology
P. Bendich, S. Cabello, H. Edelsbrunner, Pattern Recognition Letters 33 (2012) 1436–1444.
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2012 | Journal Article | IST-REx-ID: 3168
Lumpability abstractions of rule based systems
J. Feret, T.A. Henzinger, H. Koeppl, T. Petrov, Theoretical Computer Science 431 (2012) 137–164.
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2012 | Journal Article | IST-REx-ID: 3846   OA
A survey of stochastic ω regular games
K. Chatterjee, T.A. Henzinger, Journal of Computer and System Sciences 78 (2012) 394–413.
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2012 | Journal Article | IST-REx-ID: 2848   OA
Evolutionary game dynamics in populations with different learners
K. Chatterjee, D. Zufferey, M. Nowak, Journal of Theoretical Biology 301 (2012) 161–173.
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2012 | Conference Paper | IST-REx-ID: 2956
Mean payoff pushdown games
K. Chatterjee, Y. Velner, in:, Proceedings of the 2012 27th Annual ACM/IEEE Symposium on Logic in Computer Science, IEEE, 2012.
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2012 | Conference Paper | IST-REx-ID: 3341   OA
Robustness of structurally equivalent concurrent parity games
K. Chatterjee, in:, Springer, 2012, pp. 270–285.
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2012 | Conference Paper | IST-REx-ID: 3252   OA
Synthesizing protocols for digital contract signing
K. Chatterjee, V. Raman, in:, Springer, 2012, pp. 152–168.
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2012 | Conference Paper | IST-REx-ID: 497   OA
Faster algorithms for alternating refinement relations
K. Chatterjee, S. Chaubal, P. Kamath, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 167–182.
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2012 | Technical Report | IST-REx-ID: 5378
Faster algorithms for alternating refinement relations
K. Chatterjee, S. Chaubal, P. Kamath, Faster Algorithms for Alternating Refinement Relations, IST Austria, 2012.
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2012 | Conference Paper | IST-REx-ID: 3125   OA
Augmented attribute representations
V. Sharmanska, N. Quadrianto, C. Lampert, in:, Springer, 2012, pp. 242–255.
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2012 | Journal Article | IST-REx-ID: 2318   OA
Absence of bound states implies non-negativity of the scattering length
R. Seiringer, Journal of Spectral Theory 2 (2012) 321–328.
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2012 | Journal Article | IST-REx-ID: 2902
Fractal and computational geometry for generalizing cartographic objects
H. Edelsbrunner, O. Musin, A. Ukhalov, O. Yakimova, V. Alexeev, V. Bogaevskaya, A. Gorohov, M. Preobrazhenskaya, Modeling and Analysis of Information Systems 19 (2012) 152–160.
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2012 | Conference Paper | IST-REx-ID: 2825
Dynamic pruning of factor graphs for maximum marginal prediction
C. Lampert, in:, Neural Information Processing Systems, 2012, pp. 82–90.
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2012 | Journal Article | IST-REx-ID: 2849   OA
On the configuration space of Steiner minimal trees
H. Edelsbrunner, N. Strelkova, Russian Mathematical Surveys 67 (2012) 1167–1168.
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2012 | Journal Article | IST-REx-ID: 2945
HEVs, lymphatics and homeostatic immune cell trafficking in lymph nodes
J. Girard, C. Moussion, R. Förster, Nature Reviews Immunology 12 (2012) 762–773.
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2012 | Journal Article | IST-REx-ID: 2938 View | DOI
 
2012 | Journal Article | IST-REx-ID: 2952
Convergent extension Using collective cell migration and cell intercalation to shape embryos
M. Tada, C.-P.J. Heisenberg, Development 139 (2012) 3897–3904.
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2012 | Journal Article | IST-REx-ID: 2969   OA
Miniature IPSCs in hippocampal granule cells are triggered by voltage-gated Ca^(2+) channels via microdomain coupling
S. Goswami, I. Bucurenciu, P.M. Jonas, Journal of Neuroscience 32 (2012) 14294–14304.
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2012 | Conference Paper | IST-REx-ID: 2971
Interactive labeling of image segmentation hierarchies
G. Zankl, Y. Haxhimusa, A. Ion, in:, Springer, 2012, pp. 11–20.
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2012 | Conference Paper | IST-REx-ID: 3119   OA
Controlling liquids using meshes
K. Raveendran, N. Thuerey, C.J. Wojtan, G. Turk, in:, Proceedings of the ACM SIGGRAPH/Eurographics Symposium on Computer Animation, ACM, 2012, pp. 255–264.
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2012 | Journal Article | IST-REx-ID: 3121   OA
Coactivation of multiple tightly coupled calcium channels triggers spontaneous release of GABA
C. Williams, W. Chen, C. Lee, D. Yaeger, N. Vyleta, S. Smith, Nature Neuroscience 15 (2012) 1195–1197.
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2012 | Conference Paper | IST-REx-ID: 3133   OA
Alexander duality for functions: The persistent behavior of land and water and shore
H. Edelsbrunner, M. Kerber, in:, Proceedings of the Twenty-Eighth Annual Symposium on Computational Geometry , ACM, 2012, pp. 249–258.
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2012 | Conference Paper | IST-REx-ID: 3126
Information theoretic clustering using minimal spanning trees
A. Müller, S. Nowozin, C. Lampert, in:, Springer, 2012, pp. 205–215.
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2012 | Journal Article | IST-REx-ID: 3164
Guest editorial: Special issue on structured prediction and inference
M. Blaschko, C. Lampert, International Journal of Computer Vision 99 (2012) 257–258.
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2012 | Conference Paper | IST-REx-ID: 3265
Image segmentation by figure-ground composition into maximal cliques
A. Ion, J. Carreira, C. Sminchisescu, in:, IEEE, 2012.
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2012 | Book Chapter | IST-REx-ID: 3277
Can the evolution of multicellularity be anticipated in the exploration of the solar system?
H. de Vladar, J. Chela Flores, in:, Life on Earth and Other Planetary Bodies, Springer, 2012, pp. 387–405.
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2012 | Journal Article | IST-REx-ID: 3289   OA
A vaccinia virus-driven interplay between the MKK4/7-JNK1/2 pathway and cytoskeleton reorganization
A. Pereira, F. Leite, B. Brasil, J. Soares Martins, A. Torres, P. Pimenta, T. Souto Padrón, P. Tranktman, P. Ferreira, E. Kroon, C. Bonjardim, Journal of Virology 86 (2012) 172–184.
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2012 | Journal Article | IST-REx-ID: 3258   OA
Active dendrites support efficient initiation of dendritic spikes in hippocampal CA3 pyramidal neurons
S. Kim, J. Guzmán, H. Hu, P.M. Jonas, Nature Neuroscience 15 (2012) 600–606.
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2012 | Conference Paper | IST-REx-ID: 3253
Abstract domains for automated reasoning about list manipulating programs with infinite data
A. Bouajjani, C. Dragoi, C. Enea, M. Sighireanu, in:, Springer, 2012, pp. 1–22.
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2012 | Thesis | IST-REx-ID: 2964
Active properties of hippocampal CA3 pyramidal neuron dendrites
S. Kim, Active Properties of Hippocampal CA3 Pyramidal Neuron Dendrites, IST Austria, 2012.
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2012 | Journal Article | IST-REx-ID: 493   OA
Review of the BCI competition IV
M. Tangermann, K. Müller, A. Aertsen, N. Birbaumer, C. Braun, C. Brunner, R. Leeb, C. Mehring, K. Miller, G. Müller Putz, G. Nolte, G. Pfurtscheller, H. Preissl, G. Schalk, A. Schlögl, C. Vidaurre, S. Waldert, B. Blankertz, Frontiers in Neuroscience 6 (2012).
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2012 | Journal Article | IST-REx-ID: 498   OA
Predicting local adaptation in fragmented plant populations: Implications for restoration genetics
M. Pickup, D. Field, D. Rowell, A. Young, Evolutionary Applications 5 (2012) 913–924.
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2012 | Report | IST-REx-ID: 5398   OA
Actual state of research data @ ISTAustria
J. Porsche, Actual State of Research Data @ ISTAustria, IST Austria, 2012.
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2012 | Journal Article | IST-REx-ID: 3246
Cell adhesion in embryo morphogenesis
V. Barone, C.-P.J. Heisenberg, Current Opinion in Cell Biology 24 (2012) 148–153.
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2012 | Conference Paper | IST-REx-ID: 1384   OA
Conditional model checking: A technique to pass information between verifiers
D. Beyer, T.A. Henzinger, M. Keremoglu, P. Wendler, in:, Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering, ACM, 2012.
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2012 | Journal Article | IST-REx-ID: 3157   OA
The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers
L. Diaz Jr, R. Williams, J. Wu, I. Kinde, J. Hecht, J. Berlin, B. Allen, I. Božić, J. Reiter, M. Nowak, K. Kinzler, K. Oliner, B. Vogelstein, Nature 486 (2012) 537–540.
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2012 | Conference Paper | IST-REx-ID: 2957   OA
Decidable problems for probabilistic automata on infinite words
K. Chatterjee, M. Tracol, in:, Proceedings of the 2012 27th Annual ACM/IEEE Symposium on Logic in Computer Science, IEEE, 2012.
View | Files available | DOI | Download (ext.) | arXiv
 
2012 | Journal Article | IST-REx-ID: 3260   OA
Evolutionary dynamics of biological auctions
K. Chatterjee, J. Reiter, M. Nowak, Theoretical Population Biology 81 (2012) 69–80.
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2012 | Journal Article | IST-REx-ID: 506   OA
Cell migration: Fibroblasts find a new way to get ahead
M.K. Sixt, Journal of Cell Biology 197 (2012) 347–349.
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2012 | Journal Article | IST-REx-ID: 2263   OA
A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors
H. Liang, S. Hippenmeyer, H. Ghashghaei, Biology Open 1 (2012) 1200–1203.
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2012 | Journal Article | IST-REx-ID: 2302
The propagation approach for computing biochemical reaction networks
T.A. Henzinger, M. Mateescu, IEEE ACM Transactions on Computational Biology and Bioinformatics 10 (2012) 310–322.
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2012 | Conference Paper | IST-REx-ID: 2903   OA
The adaptive topology of a digital image
H. Edelsbrunner, O. Symonova, in:, IEEE, 2012, pp. 41–48.
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2012 | Conference Paper | IST-REx-ID: 2915
Multi-modal learning for dynamic tactile sensing
O. Kroemer, C. Lampert, J. Peters, in:, Deutsches Zentrum für Luft und Raumfahrt, 2012.
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2012 | Journal Article | IST-REx-ID: 2958   OA
Hippocampal place cells can encode multiple trial-dependent features through rate remapping
K. Allen, J.N. Rawlins, D. Bannerman, J.L. Csicsvari, Journal of Neuroscience 32 (2012) 14752–14766.
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2012 | Journal Article | IST-REx-ID: 2941   OA
On the optimality of functionals over triangulations of Delaunay sets
N. Dolbilin, H. Edelsbrunner, O. Musin, Russian Mathematical Surveys 67 (2012) 781–783.
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2012 | Journal Article | IST-REx-ID: 2946   OA
MicroRNAs associated with the different human Argonaute proteins
A. Dueck, C. Ziegler, A. Eichner, E. Berezikov, G. Meister, Nucleic Acids Research 40 (2012) 9850–9862.
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2012 | Journal Article | IST-REx-ID: 2965   OA
Kontext Open Access: Creative Commons
P. Danowski, Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen & Bibliothekare 65 (2012) 200–212.
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2012 | Journal Article | IST-REx-ID: 2953
Cell-cell adhesion and extracellular matrix diversity counts
C.-P.J. Heisenberg, R. Fässler, Current Opinion in Cell Biology 24 (2012) 559–561.
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2012 | Journal Article | IST-REx-ID: 3122
Disassortative mating and the maintenance of sexual polymorphism in painted maple
D. Field, S. Barrett, Molecular Ecology 21 (2012) 3640–3643.
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2012 | Conference Paper | IST-REx-ID: 3127   OA
The most persistent soft-clique in a set of sampled graphs
N. Quadrianto, C. Lampert, C. Chen, in:, Proceedings of the 29th International Conference on Machine Learning, Omnipress, 2012, pp. 211–218.
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2012 | Conference Paper | IST-REx-ID: 3134
Add isotropic Gaussian kernels at own risk: More and more resilient modes in higher dimensions
H. Edelsbrunner, B. Fasy, G. Rote, in:, Proceedings of the Twenty-Eighth Annual Symposium on Computational Geometry , ACM, 2012, pp. 91–100.
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2012 | Journal Article | IST-REx-ID: 3242   OA
Social transfer of pathogenic fungus promotes active immunisation in ant colonies
M. Konrad, M. Vyleta, F. Theis, M. Stock, S. Tragust, M. Klatt, V. Drescher, C. Marr, L.V. Ugelvig, S. Cremer, PLoS Biology 10 (2012).
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2012 | Journal Article | IST-REx-ID: 3158   OA
Tissue inducible Lifeact expression allows visualization of actin dynamics in vivo and ex vivo
H. Schachtner, A. Li, D. Stevenson, S. Calaminus, S. Thomas, S. Watson, M.K. Sixt, R. Wedlich Söldner, D. Strathdee, L. Machesky, European Journal of Cell Biology 91 (2012) 923–929.
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2012 | Journal Article | IST-REx-ID: 3160
Transcription factor kinetics and the emerging asymmetry in the early mammalian embryo
P. Pantazis, T. Bollenbach, Cell Cycle 11 (2012) 2055–2058.
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2012 | Conference Paper | IST-REx-ID: 3280   OA
Subspace LWE
K.Z. Pietrzak, in:, Springer, 2012, pp. 548–563.
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2012 | Journal Article | IST-REx-ID: 3317   OA
Nanodomain coupling between Ca(2+) channels and sensors of exocytosis at fast mammalian synapses
E. Eggermann, I. Bucurenciu, S. Goswami, P.M. Jonas, Nature Reviews Neuroscience 13 (2012) 7–21.
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2012 | Journal Article | IST-REx-ID: 3247
Remaining genetic diversity in Brazilian Merganser (Mergus octosetaceus)
S. Vilaça, R.A. Fernandes Redondo, L. Lins, F. Santos, Conservation Genetics 13 (2012) 293–298.
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2012 | Journal Article | IST-REx-ID: 3331   OA
A worst case bound for topology computation of algebraic curves
M. Kerber, M. Sagraloff, Journal of Symbolic Computation 47 (2012) 239–258.
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2012 | Journal Article | IST-REx-ID: 3115
Deconstructing approximate offsets
E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, Discrete & Computational Geometry 48 (2012) 964–989.
View | Files available | DOI | Download (ext.) | arXiv
 
2012 | Journal Article | IST-REx-ID: 3836
Separate compilation of hierarchical real-time programs into linear-bounded embedded machine code
A. Ghosal, D. Iercan, C. Kirsch, T.A. Henzinger, A. Sangiovanni Vincentelli, Science of Computer Programming 77 (2012) 96–112.
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2012 | Journal Article | IST-REx-ID: 494
Translating to Co-Büchi made tight, unified, and useful
U. Boker, O. Kupferman, ACM Transactions on Computational Logic (TOCL) 13 (2012).
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2012 | Conference Paper | IST-REx-ID: 2888
Quantitative reactive models
T.A. Henzinger, in:, Conference Proceedings MODELS 2012, Springer, 2012, pp. 1–2.
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2012 | Conference Paper | IST-REx-ID: 2890
Synthesis from incompatible specifications
P. Cerny, S. Gopi, T.A. Henzinger, A. Radhakrishna, N. Totla, in:, Proceedings of the Tenth ACM International Conference on Embedded Software, ACM, 2012, pp. 53–62.
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2012 | Journal Article | IST-REx-ID: 2972   OA
Energy parity games
K. Chatterjee, L. Doyen, Theoretical Computer Science 458 (2012) 49–60.
View | Files available | DOI | arXiv
 
2012 | Conference Paper | IST-REx-ID: 3165
An O(n2) time algorithm for alternating Büchi games
K. Chatterjee, M. Henzinger, in:, Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, SIAM, 2012, pp. 1386–1399.
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2012 | Journal Article | IST-REx-ID: 3254
The complexity of stochastic Müller games
K. Chatterjee, Information and Computation 211 (2012) 29–48.
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2012 | Conference Paper | IST-REx-ID: 2048   OA
Practical leakage-resilient symmetric cryptography
S. Faust, K.Z. Pietrzak, J. Schipper, in:, Conference Proceedings CHES 2012, Springer, 2012, pp. 213–232.
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2012 | Journal Article | IST-REx-ID: 2411   OA
A consistent phylogenetic backbone for the fungi
I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.
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2012 | Conference Paper | IST-REx-ID: 2930   OA
Towards minimizing k-submodular functions
A. Huber, V. Kolmogorov, in:, Springer, 2012, pp. 451–462.
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2012 | Journal Article | IST-REx-ID: 2959   OA
Geometry of maximum likelihood estimation in Gaussian graphical models
C. Uhler, Annals of Statistics 40 (2012) 238–261.
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2012 | Journal Article | IST-REx-ID: 2954   OA
A deconvolution based method with high sensitivity and temporal resolution for detection of spontaneous synaptic currents in vitro and in vivo
A. Pernia-Andrade, S. Goswami, Y. Stickler, U. Fröbe, A. Schlögl, P.M. Jonas, Biophysical Journal 103 (2012) 1429–1439.
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2012 | Journal Article | IST-REx-ID: 2966   OA
The dynamics of male-male competition in Cardiocondyla obscurior ants
S. Cremer, M. Suefuji, A. Schrempf, J. Heinze, BMC Ecology 12 (2012).
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2012 | Journal Article | IST-REx-ID: 3159   OA
Hierarchical ordering of reticular networks
Y. Mileyko, H. Edelsbrunner, C. Price, J. Weitz, PLoS One 7 (2012).
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2012 | Journal Article | IST-REx-ID: 3161   OA View | Files available | DOI
 
2012 | Conference Paper | IST-REx-ID: 3123   OA
Explicit mesh surfaces for particle based fluids
J. Yu, C.J. Wojtan, G. Turk, C. Yap, in:, Computer Graphics Forum, Blackwell Publishing, 2012, pp. 815–824.
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2012 | Journal Article | IST-REx-ID: 3130   OA
Patterns of evolutionary conservation of essential genes correlate with their compensability
T. Bergmiller, M. Ackermann, O. Silander, PLoS Genetics 8 (2012).
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2012 | Journal Article | IST-REx-ID: 3166   OA
Amino acid fermentation at the origin of the genetic code
H. Vladar, Biology Direct 7 (2012).
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2012 | Journal Article | IST-REx-ID: 3262   OA
Optimizing information flow in small genetic networks. III. A self-interacting gene
G. Tkacik, A. Walczak, W. Bialek, Physical Review E Statistical Nonlinear and Soft Matter Physics 85 (2012).
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2012 | Journal Article | IST-REx-ID: 3274
A 2.5D-Fourier-BEM model for vibrations in a tunnel running through layered anisotropic soil
G. Rieckh, W. Kreuzer, H. Waubke, P. Balazs, Engineering Analysis with Boundary Elements 36 (2012) 960–967.
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2012 | Conference Paper | IST-REx-ID: 3279
Hardness preserving constructions of pseudorandom functions
A. Jain, K.Z. Pietrzak, A. Tentes, in:, Springer, 2012, pp. 369–382.
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2012 | Conference Paper | IST-REx-ID: 3281
Lossy functions do not amplify well
K.Z. Pietrzak, A. Rosen, G. Segev, in:, Springer, 2012, pp. 458–475.
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2012 | Conference Paper | IST-REx-ID: 3250
Cryptography from learning parity with noise
K.Z. Pietrzak, in:, Springer, 2012, pp. 99–114.
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2012 | Journal Article | IST-REx-ID: 3248   OA
Real-time detection of colored objects in multiple camera streams with off-the-shelf hardware components
C. Lampert, J. Peters, Journal of Real-Time Image Processing 7 (2012) 31–41.
View | Files available | DOI
 
2012 | Journal Article | IST-REx-ID: 3243
Zwischen Technologie und Information
P. Danowski, Büchereiperspektiven 1/2012 (2012) 11.
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2012 | Conference Paper | IST-REx-ID: 2891   OA
Approximate determinization of quantitative automata
U. Boker, T.A. Henzinger, in:, Leibniz International Proceedings in Informatics, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 362–373.
View | Files available | DOI
 
2012 | Conference Paper | IST-REx-ID: 2916   OA
Interface Simulation Distances
P. Cerny, M. Chmelik, T.A. Henzinger, A. Radhakrishna, in:, Electronic Proceedings in Theoretical Computer Science, EPTCS, 2012, pp. 29–42.
View | Files available | DOI | Download (ext.) | arXiv
 
2012 | Conference Paper | IST-REx-ID: 2942
Independent implementability of viewpoints
T.A. Henzinger, D. Nickovic, in:, Conference Proceedings Monterey Workshop 2012, Springer, 2012, pp. 380–395.
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2012 | Conference Paper | IST-REx-ID: 2947   OA
Equivalence of games with probabilistic uncertainty and partial observation games
K. Chatterjee, M. Chmelik, R. Majumdar, in:, Springer, 2012, pp. 385–399.
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2012 | Journal Article | IST-REx-ID: 3128   OA
A survey of partial-observation stochastic parity games
K. Chatterjee, L. Doyen, T.A. Henzinger, Formal Methods in System Design 43 (2012) 268–284.
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2012 | Conference Paper | IST-REx-ID: 3135   OA
Efficient controller synthesis for consumption games with multiple resource types
B. Brázdil, K. Chatterjee, A. Kučera, P. Novotny, in:, Springer, 2012, pp. 23–38.
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2012 | Conference Paper | IST-REx-ID: 495   OA
A Myhill Nerode theorem for automata with advice
A. Kruckman, S. Rubin, J. Sheridan, B. Zax, in:, Proceedings GandALF 2012, Open Publishing Association, 2012, pp. 238–246.
View | Files available | DOI
 
2012 | Journal Article | IST-REx-ID: 6588   OA
Elementary solutions of the Bernstein problem on two intervals
F. Pausinger, Journal of Mathematical Physics, Analysis, Geometry 8 (2012) 63–78.
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2012 | Journal Article | IST-REx-ID: 2904   OA
Weak multipliers for generalized van der Corput sequences
F. Pausinger, Journal de Theorie Des Nombres Des Bordeaux 24 (2012) 729–749.
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2012 | Preprint | IST-REx-ID: 2928   OA
Generalized sequential tree-reweighted message passing
V. Kolmogorov, T. Schoenemann, ArXiv (2012).
View | Download (ext.) | arXiv
 
2012 | Conference Paper | IST-REx-ID: 3255   OA
Games and Markov decision processes with mean payoff parity and energy parity objectives
K. Chatterjee, L. Doyen, in:, Springer, 2012, pp. 37–46.
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