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2401 Publications

2010 | Journal Article | IST-REx-ID: 3776   OA
Barton NH. 2010. Genetic linkage and natural selection. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365(1552), 2559–2569.
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2010 | Journal Article | IST-REx-ID: 3783
Palero F, González Candelas F, Pascual M. 2010. Microsatelight – Pipeline to expedite microsatellite analysis. Journal of Heredity. 102(2), 247–249.
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2010 | Journal Article | IST-REx-ID: 3788
Klopper A, Krens G, Grill S, Heisenberg C-PJ. 2010. Finite-size corrections to scaling behavior in sorted cell aggregates. The European Physical Journal E: Soft Matter and Biological Physics. 33(2), 99–103.
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2010 | Journal Article | IST-REx-ID: 3790   OA
Diz Muñoz A, Krieg M, Bergert M, Ibarlucea Benitez I, Müller D, Paluch E, Heisenberg C-PJ. 2010. Control of directed cell migration in vivo by membrane-to-cortex attachment. PLoS Biology. 8(11), e1000544.
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2010 | Book Chapter | IST-REx-ID: 3795   OA
Edelsbrunner H, Morozov D, Patel A. 2010. The stability of the apparent contour of an orientable 2-manifold. Topological Data Analysis and Visualization: Theory, Algorithms and Applications. , Mathematics and Visualization, 27–42.
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2010 | Journal Article | IST-REx-ID: 3834   OA
Wolf V, Goel R, Mateescu M, Henzinger TA. 2010. Solving the chemical master equation using sliding windows. BMC Systems Biology. 4(42), 1–19.
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2010 | Conference Paper | IST-REx-ID: 3839   OA
Henzinger TA, Hottelier T, Kovács L, Voronkov A. 2010. Invariant and type inference for matrices. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS, vol. 5944. 163–179.
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2010 | Conference Paper | IST-REx-ID: 3853   OA
Chatterjee K, Doyen L, Edelsbrunner H, Henzinger TA, Rannou P. 2010. Mean-payoff automaton expressions. CONCUR: Concurrency Theory, LNCS, vol. 6269. 269–283.
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2010 | Conference Paper | IST-REx-ID: 3858
Chatterjee K, Doyen L. 2010. The complexity of partial-observation parity games. LPAR: Logic for Programming, Artificial Intelligence, and Reasoning, LNCS, vol. 6397. 1–14.
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2010 | Conference Paper | IST-REx-ID: 3865
Chatterjee K, De Alfaro L, Raman V, Sánchez C. 2010. Analyzing the impact of change in multi-threaded programs. FASE: Fundamental Approaches To Software Engineering, LNCS, vol. 6013. 293–307.
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2010 | Journal Article | IST-REx-ID: 4243   OA
Barton NH, Etheridge A, Véber A. 2010. A new model for evolution in a spatial continuum. Electronic Journal of Probability. 15(7), 162–216.
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2010 | Conference Paper | IST-REx-ID: 4382   OA
Guerraoui R, Henzinger TA, Kapalka M, Singh V. 2010. Transactions in the jungle. SPAA: ACM Symposium on Parallel Algorithms and Architectures 263–272.
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2010 | Conference Paper | IST-REx-ID: 3860   OA
Chatterjee K, Doyen L, Henzinger TA, Raskin J. 2010. Generalized mean-payoff and energy games. FSTTCS: Foundations of Software Technology and Theoretical Computer Science, LIPIcs, vol. 8. 505–516.
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2010 | Conference Paper | IST-REx-ID: 3719   OA
Feret J, Henzinger TA, Koeppl H, Petrov T. 2010. Lumpability abstractions of rule-based systems. MECBIC: Membrane Computing and Biologically Inspired Process Calculi, EPTCS, vol. 40. 142–161.
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2010 | Journal Article | IST-REx-ID: 3772   OA
Barton NH. 2010. Understanding adaptation in large populations. PLoS Genetics. 6(6), e1000987.
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2010 | Journal Article | IST-REx-ID: 3777   OA
Barton NH. 2010. Mutation and the evolution of recombination. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365(1544), 1281–1294.
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2010 | Conference Paper | IST-REx-ID: 3847   OA
Didier F, Henzinger TA, Mateescu M, Wolf V. 2010. SABRE: A tool for the stochastic analysis of biochemical reaction networks. QEST: Quantitative Evaluation of Systems 193–194.
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2010 | Conference Paper | IST-REx-ID: 3854
Chatterjee K, Horn F, Löding C. 2010. Obliging games. CONCUR: Concurrency Theory, LNCS, vol. 6269. 284–296.
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2010 | Conference Paper | IST-REx-ID: 3866   OA
Bloem R, Chatterjee K, Greimel K, Henzinger TA, Jobstmann B. 2010. Robustness in the presence of liveness. CAV: Computer Aided Verification, LNCS, vol. 6174. 410–424.
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2010 | Journal Article | IST-REx-ID: 3842
Didier F, Henzinger TA, Mateescu M, Wolf V. 2010. Fast adaptive uniformization of the chemical master equation. IET Systems Biology. 4(6), 441–452.
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2010 | Journal Article | IST-REx-ID: 3861
Chatterjee K, Henzinger TA, Piterman N. 2010. Strategy logic. Information and Computation. 208(6), 677–693.
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2010 | Thesis | IST-REx-ID: 3962
Pflicke H. 2010.   Dendritic cell migration across basement membranes in the skin, IST Austria,p.
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2010 | Conference Paper | IST-REx-ID: 4369   OA
Nickovic D, Piterman N. 2010. From MTL to deterministic timed automata. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, vol. 6246. 152–167.
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2010 | Journal Article | IST-REx-ID: 474
Barton NH, Kelleher J, Etheridge A. 2010. A new model for extinction and recolonization in two dimensions: Quantifying phylogeography. Evolution. 64(9), 2701–2715.
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2010 | Conference Paper | IST-REx-ID: 4388
Chatterjee K, Henzinger TA, Jobstmann B, Radhakrishna A. 2010. GIST: A solver for probabilistic games. CAV: Computer Aided Verification, LNCS, vol. 6174. 665–669.
View | Files available | DOI | Download (ext.) | arXiv
 
2010 | Conference Paper | IST-REx-ID: 4390
Cerny P, Radhakrishna A, Zufferey D, Chaudhuri S, Alur R. 2010. Model checking of linearizability of concurrent list implementations. CAV: Computer Aided Verification, LNCS, vol. 6174. 465–479.
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2010 | Conference (Editor) | IST-REx-ID: 3859
Chatterjee K, Henzinger TA eds. 2010. Formal modeling and analysis of timed systems, Springer,p.
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2010 | Journal Article | IST-REx-ID: 3789
Quesada-Hernández E, Caneparo L, Schneider S, Winkler S, Liebling M, Fraser S, Heisenberg C-PJ. 2010. Stereotypical cell division orientation controls neural rod midline formation in zebrafish. Current Biology. 20(21), 1966–1972.
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2010 | Journal Article | IST-REx-ID: 3773   OA
Barton NH. 2010. What role does natural selection play in speciation? Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365(1547), 1825–1840.
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2010 | Journal Article | IST-REx-ID: 3785
Palero F, Abello P, Macpherson E, Matthee C, Pascual M. 2010. Genetic diversity levels in fishery-exploited spiny lobsters of the Genus Palinurus (Decapoda: Achelata). Journal of Crustacean Biology. 30(4), 658–663.
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2010 | Conference Paper | IST-REx-ID: 3848
Bendich P, Edelsbrunner H, Morozov D, Patel A. 2010. The robustness of level sets. ESA: European Symposium on Algorithms, LNCS, vol. 6346. 1–10.
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2010 | Conference Paper | IST-REx-ID: 3850
Berberich E, Halperin D, Kerber M, Pogalnikova R. 2010. Polygonal reconstruction from approximate offsets. EuroCG: European Workshop on Computational Geometry 12–23.
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2010 | Journal Article | IST-REx-ID: 3901   OA
Bendich P, Edelsbrunner H, Kerber M. 2010. Computing robustness and persistence for images. IEEE Transactions of Visualization and Computer Graphics. 16(6), 1251–1260.
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2010 | Book | IST-REx-ID: 4346   OA
Danowski P, Bergmann J. 2010. Handbuch Bibliothek 2.0, De Gruyter,p.
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2010 | Book Chapter | IST-REx-ID: 4339   OA
Bergmann J, Danowski P. 2010. Ist Bibliothek 2.0 überhaupt noch relevant? – Eine Einleitung in das Handbuch. Handbuch Bibliothek 2.0. Bibliotheks- und Informationspraxis 41 5–20.
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2010 | Conference Paper | IST-REx-ID: 4396   OA
Beyer D, Henzinger TA, Théoduloz G, Zufferey D. 2010. Shape refinement through explicit heap analysis. FASE: Fundamental Approaches To Software Engineering, LNCS, vol. 6013. 263–277.
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2010 | Conference Paper | IST-REx-ID: 4389   OA
Doyen L, Henzinger TA, Legay A, Nickovic D. 2010. Robustness of sequential circuits. ACSD: Application of Concurrency to System Design 77–84.
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2010 | Journal Article | IST-REx-ID: 533
Hoenicke J, Leino K, Podelski A, Schäf M, Wies T. 2010. Doomed program points. Formal Methods in System Design. 37(2–3), 171–199.
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2010 | Conference Paper | IST-REx-ID: 3855
Chatterjee K, Doyen L, Henzinger TA. 2010. Qualitative analysis of partially-observable Markov Decision Processes. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 6281. 258–269.
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2010 | Journal Article | IST-REx-ID: 3867
Chatterjee K, Doyen L, Henzinger TA. 2010. Expressiveness and closure properties for quantitative languages. Logical Methods in Computer Science. 6(3), 1–23.
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2010 | Journal Article | IST-REx-ID: 2409   OA
Kupczok A, Schmidt H, Von Haeseler A. 2010. Accuracy of phylogeny reconstruction methods combining overlapping gene data sets . Algorithms for Molecular Biology. 5(1), 37.
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2010 | Journal Article | IST-REx-ID: 3774
Senn H, Swanson G, Goodman S, Barton NH, Pemberton J. 2010. Phenotypic correlates of hybridisation between red and sika deer (genus Cervus). Journal of Animal Ecology. 79(2), 414–425.
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2010 | Journal Article | IST-REx-ID: 3779   OA
Rosas U, Barton NH, Copsey L, Barbier De Reuille P, Coen E. 2010. Cryptic variation between species and the basis of hybrid performance. PLoS Biology. 8(7), e1000429.
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2010 | Conference Paper | IST-REx-ID: 3793
Nowozin S, Gehler P, Lampert C. 2010. On parameter learning in CRF-based approaches to object class image segmentation. ECCV: European Conference on Computer Vision, LNCS, vol. 6316. 98–111.
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2010 | Journal Article | IST-REx-ID: 3604
Senn H, Goodman S, Swanson G, Barton NH, Pemberton J. 2010. Investigating temporal changes in hybridisation and introgression between invasive sika (Cervus nippon) and native red deer (Cervus elaphus) on the Kintyre Peninsula, Scotland. Molecular Ecology. 19(5), 910–924.
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2010 | Conference Paper | IST-REx-ID: 3849   OA
Bendich P, Edelsbrunner H, Kerber M, Patel A. 2010. Persistent homology under non-uniform error. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 6281. 12–23.
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2010 | Conference Paper | IST-REx-ID: 3856   OA
Chatterjee K, Doyen L, Gimbert H, Henzinger TA. 2010. Randomness for free. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 6281. 246–257.
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2010 | Journal Article | IST-REx-ID: 3868   OA
Chatterjee K, De Alfaro L, Majumdar R, Raman V. 2010. Algorithms for game metrics. Logical Methods in Computer Science. 6(3), 1–27.
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2010 | Journal Article | IST-REx-ID: 3863
Berwanger D, Chatterjee K, De Wulf M, Doyen L, Henzinger TA. 2010. Strategy construction for parity games with imperfect information. Information and Computation. 208(10), 1206–1220.
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2010 | Conference Paper | IST-REx-ID: 4378   OA
Kuncak V, Piskac R, Suter P, Wies T. 2010. Building a calculus of data structures. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS, vol. 5944. 26–44.
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2010 | Book Chapter | IST-REx-ID: 4392
Cerny P, Henzinger TA, Radhakrishna A. 2010. Quantitative Simulation Games. Time For Verification: Essays in Memory of Amir Pnueli. Essays in Memory of Amir Pnueli, LNCS, vol. 6200. 42–60.
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2010 | Conference Paper | IST-REx-ID: 488   OA
Alur R, Cerny P. 2010. Expressiveness of streaming string transducers. FSTTCS: Foundations of Software Technology and Theoretical Computer Science, LIPIcs, vol. 8. 1–12.
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2010 | Technical Report | IST-REx-ID: 5388   OA
Chatterjee K, Cerny P, Henzinger TA, Radhakrishna A, Singh R. 2010. Quantitative synthesis for concurrent programs, IST Austria, 17p.
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2010 | Technical Report | IST-REx-ID: 5390   OA
Chatterjee K, Fijalkow N. 2010. Topological, automata-theoretic and logical characterization of finitary languages, IST Austria, 21p.
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2010 | Conference Paper | IST-REx-ID: 4361
Wies T, Zufferey D, Henzinger TA. 2010. Forward analysis of depth-bounded processes. FoSSaCS: Foundations of Software Science and Computation Structures, LNCS, vol. 6014. 94–108.
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2010 | Conference Paper | IST-REx-ID: 4380   OA
Henzinger TA, Tomar A, Singh V, Wies T, Zufferey D. 2010. A marketplace for cloud resources. EMSOFT: Embedded Software 1–8.
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2010 | Journal Article | IST-REx-ID: 3832   OA
Guzmán J, Jonas PM. 2010. Beyond TARPs: The growing list of auxiliary AMPAR subunits. Neuron. 66(1), 8–10.
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2010 | Journal Article | IST-REx-ID: 4157   OA
Papusheva E, Heisenberg C-PJ. 2010. Spatial organization of adhesion: force-dependent regulation and function in tissue morphogenesis. EMBO Journal. 29(16), 2753–2768.
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2010 | Conference Paper | IST-REx-ID: 3851
Chatterjee K, Doyen L. 2010. Energy parity games. ICALP: Automata, Languages and Programming, 37th International Colloquium, LNCS, vol. 6199. 599–610.
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2009 | Journal Article | IST-REx-ID: 3775   OA
Barton NH, Coe J. 2009. On the application of statistical physics to evolutionary biology. Journal of Theoretical Biology. 259(2), 317–324.
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2009 | Conference Paper | IST-REx-ID: 3871   OA
Chatterjee K, Doyen L, Henzinger TA. 2009. Probabilistic weighted automata. CONCUR: Concurrency Theory, LNCS, vol. 5710. 244–258.
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2009 | Journal Article | IST-REx-ID: 4242   OA
Barton NH, De Cara M. 2009. The evolution of strong reproductive isolation. Evolution; International Journal of Organic Evolution. 63(5), 1171–1190.
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2009 | Conference Paper | IST-REx-ID: 4545   OA
Chatterjee K, Doyen L, Henzinger TA. 2009. A survey of stochastic games with limsup and liminf objectives. ICALP: Automata, Languages and Programming, LNCS, vol. 5556. 1–15.
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2009 | Conference Paper | IST-REx-ID: 4569   OA
Bloem R, Chatterjee K, Henzinger TA, Jobstmann B. 2009. Better quality in synthesis through quantitative objectives. CAV: Computer Aided Verification, LNCS, vol. 5643. 140–156.
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2009 | Book Chapter | IST-REx-ID: 3675
Barton NH. 2009. Why sex and recombination? . Cold Spring Harbor Symposia on Quantitative Biology. vol. 74. 187–195.
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2009 | Conference Paper | IST-REx-ID: 3841   OA
Henzinger TA, Jobstmann B, Wolf V. 2009. Formalisms for specifying Markovian population models. RP: Reachability Problems, LNCS, vol. 5797. 3–23.
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2009 | Journal Article | IST-REx-ID: 4231
Barton NH, De Vladar H. 2009. Statistical mechanics and the evolution of polygenic quantitative traits. Genetics. 181(3), 997–1011.
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2009 | Technical Report | IST-REx-ID: 5392   OA
Chatterjee K. 2009. Probabilistic automata on infinite words: Decidability and undecidability results, IST Austria, 17p.
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2009 | Conference Paper | IST-REx-ID: 4542   OA
Chatterjee K, Doyen L, Henzinger TA. 2009. Alternating weighted automata. FCT: Fundamentals of Computation Theory, LNCS, vol. 5699. 3–13.
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2009 | Journal Article | IST-REx-ID: 4136
Polechova J, Barton NH, Marion G. 2009. Species’ range: Adaptation in space and time. American Naturalist. 174(5), E186–E204.
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2009 | Technical Report | IST-REx-ID: 5393   OA
Chatterjee K, Henzinger TA, Jobstmann B, Radhakrishna A. 2009. Gist: A solver for probabilistic games, IST Austria, 12p.
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2009 | Journal Article | IST-REx-ID: 3780   OA
Davison A, Barton NH, Clarke B. 2009. The effect of chirality phenotype and genotype on the fecundity and viability of Partula suturalis and Lymnaea stagnalis: Implications for the evolution of sinistral snails. Journal of Evolutionary Biology. 22(8), 1624–1635.
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2009 | Conference Paper | IST-REx-ID: 3843
Didier F, Henzinger TA, Mateescu M, Wolf V. 2009. Fast adaptive uniformization of the chemical master equation. HIBI: High-Performance Computational Systems Biology vol. 4. 118–127.
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2009 | Conference Paper | IST-REx-ID: 3968   OA
Edelsbrunner H, Harer J. 2009. The persistent Morse complex segmentation of a 3-manifold. 3DPH: Modelling the Physiological Human, LNCS, vol. 5903. 36–50.
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2009 | Conference Paper | IST-REx-ID: 4543
Chatterjee K, Henzinger TA, Horn F. 2009. Stochastic games with finitary objectives. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 5734. 34–54.
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2009 | Technical Report | IST-REx-ID: 5394   OA
Chatterjee K, Henzinger TA, Horn F. 2009. Improved lower bounds for request-response and finitary Streett games, IST Austria, 11p.
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2009 | Conference Paper | IST-REx-ID: 3837   OA
Tripakis S, Lickly B, Henzinger TA, Lee E. 2009. On relational interfaces. EMSOFT ’09 Proceedings of the seventh ACM international conference on Embedded software. EMSOFT: Embedded Software 67–76.
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2009 | Conference Paper | IST-REx-ID: 3844   OA
Henzinger TA, Kirsch C, Marques E, Sokolova A. 2009. Distributed, modular HTL. RTSS: Real-Time Systems Symposium 171–180.
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2009 | Journal Article | IST-REx-ID: 3870   OA
Chatterjee K, Henzinger TA, Horn F. 2009. Finitary winning in omega-regular games. ACM Transactions on Computational Logic (TOCL). 11(1).
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2009 | Technical Report | IST-REx-ID: 5395   OA
Chatterjee K, Doyen L, Henzinger TA. 2009. Qualitative analysis of partially-observable Markov decision processes, IST Austria, 20p.
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2008 | Journal Article | IST-REx-ID: 517
Barton NH. 2008. Identity and coalescence in structured populations: A commentary on ‘Inbreeding coefficients and coalescence times’ by Montgomery Slatkin. Genetical Research. 89(5–6), 475–477.
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