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2432 Publications

2011 | Conference Paper | IST-REx-ID: 3362
Fisher J, Henzinger TA, Nickovic D, Piterman N, Singh A, Vardi M. 2011. Dynamic reactive modules. CONCUR: Concurrency Theory, LNCS, vol. 6901. 404–418.
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2011 | Conference Paper | IST-REx-ID: 3367
Chen C, Kerber M. 2011. An output sensitive algorithm for persistent homology. SoCG: Symposium on Computational Geometry 207–216.
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2011 | Journal Article | IST-REx-ID: 3778   OA
Barton NH. 2011. Estimating linkage disequilibria. Heredity. 106(2), 205–206.
View | DOI | Download (ext.) | PubMed | Europe PMC
 
2011 | Journal Article | IST-REx-ID: 3381
Henzinger TA, Jobstmann B, Wolf V. 2011. Formalisms for specifying Markovian population models. IJFCS: International Journal of Foundations of Computer Science. 22(4), 823–841.
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2011 | Technical Report | IST-REx-ID: 5382   OA
Chatterjee K. 2011. Robustness of structurally equivalent concurrent parity games, IST Austria, 18p.
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2011 | Technical Report | IST-REx-ID: 5387   OA
Chatterjee K, Doyen L. 2011. Energy and mean-payoff parity Markov decision processes, IST Austria, 20p.
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2011 | Conference Paper | IST-REx-ID: 3336
Chen C, Freedman D, Lampert C. 2011. Enforcing topological constraints in random field image segmentation. CVPR: Computer Vision and Pattern Recognition. CVPR: Conference on Computer Vision and Pattern Recognition 2089–2096.
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2011 | Journal Article | IST-REx-ID: 3267
Chen C, Freedman D. 2011. Hardness results for homology localization. Discrete & Computational Geometry. 45(3), 425–448.
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2011 | Conference Paper | IST-REx-ID: 3298   OA
Raveendran K, Wojtan CJ, Turk G. 2011. Hybrid smoothed particle hydrodynamics. SCA: ACM SIGGRAPH/Eurographics Symposium on Computer animation 33–42.
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2011 | Conference Paper | IST-REx-ID: 3301   OA
Henzinger TA, Mateescu M. 2011. Tail approximation for the chemical master equation. WCSB: Workshop on Computational Systems Biology (TICSP)
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2011 | Conference Paper | IST-REx-ID: 3313   OA
Chen C, Edelsbrunner H. 2011. Diffusion runs low on persistence fast. Proceedings of the IEEE International Conference on Computer Vision. ICCV: International Conference on Computer Vision 6126271.
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2011 | Preprint | IST-REx-ID: 3363   OA
Chatterjee K, Henzinger TA, Tracol M. The decidability frontier for probabilistic automata on infinite words.
View | Download (ext.) | arXiv
 
2011 | Conference Paper | IST-REx-ID: 3349   OA
Chatterjee K, Fijalkow N. 2011. A reduction from parity games to simple stochastic games. GandALF: Games, Automata, Logic, and Formal Verification, EPTCS, vol. 54. 74–86.
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2011 | Conference Paper | IST-REx-ID: 3351   OA
Chatterjee K, Doyen L, Singh R. 2011. On memoryless quantitative objectives. FCT: Fundamentals of Computation Theory, LNCS, vol. 6914. 148–159.
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2011 | Journal Article | IST-REx-ID: 3318   OA
Eggermann E, Jonas PM. 2011. How the “slow” Ca(2+) buffer parvalbumin affects transmitter release in nanodomain coupling regimes at GABAergic synapses. Nature Neuroscience. 15, 20–22.
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2011 | Journal Article | IST-REx-ID: 3320
Nowozin S, Lampert C. 2011. Structured learning and prediction in computer vision. Foundations and Trends in Computer Graphics and Vision. 6(3–4), 185–365.
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2011 | Conference Paper | IST-REx-ID: 3325
Alur R, Cerny P. 2011. Streaming transducers for algorithmic verification of single pass list processing programs. POPL: Principles of Programming Languages vol. 46. 599–610.
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2011 | Conference Paper | IST-REx-ID: 3337
Wang Z, Lampert C, Mülling K, Schölkopf B, Peters J. 2011. Learning anticipation policies for robot table tennis. IROS: RSJ International Conference on Intelligent Robots and Systems 332–337.
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2011 | Conference Paper | IST-REx-ID: 3344
Chatterjee K. 2011. Graph games with reachability objectives. RP: Reachability Problems, LNCS, vol. 6945. 1–1.
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2011 | Journal Article | IST-REx-ID: 3332
Kerber M, Sagraloff M. 2011. A note on the complexity of real algebraic hypersurfaces. Graphs and Combinatorics. 27(3), 419–430.
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2011 | Journal Article | IST-REx-ID: 3781
Fasy BT. 2011. The difference in length of curves in R^n. Acta Sci. Math. (Szeged). 77(1–2), 359–367.
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2011 | Journal Article | IST-REx-ID: 3382
Kroemer O, Lampert C, Peters J. 2011. Learning dynamic tactile sensing with robust vision based training. IEEE Transactions on Robotics. 27(3), 545–557.
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2011 | Journal Article | IST-REx-ID: 3387   OA
Kupczok A. 2011. Split based computation of majority rule supertrees. BMC Evolutionary Biology. 11(205).
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2011 | Journal Article | IST-REx-ID: 3394   OA
Polechova J, Barton NH. 2011. Genetic drift widens the expected cline but narrows the expected cline width. Genetics. 189(1), 227–235.
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2011 | Journal Article | IST-REx-ID: 3399   OA
Cremer S, Schrempf A, Heinze J. 2011. Competition and opportunity shape the reproductive tactics of males in the ant Cardiocondyla obscurior. PLoS One. 6(3), e17323.
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2011 | Journal Article | IST-REx-ID: 3368   OA
Krens G, Möllmert S, Heisenberg C-PJ. 2011. Enveloping cell layer differentiation at the surface of zebrafish germ layer tissue explants. PNAS. 108(3), E9–E10.
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2011 | Journal Article | IST-REx-ID: 3370   OA
Kupczok A. 2011. Consequences of different null models on the tree shape bias of supertree methods. Systematic Biology. 60(2), 218–225.
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2011 | Journal Article | IST-REx-ID: 3375   OA
de Vladar H, Barton NH. 2011. The statistical mechanics of a polygenic character under stabilizing selection mutation and drift. Journal of the Royal Society Interface. 8(58), 720–739.
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2011 | Journal Article | IST-REx-ID: 490   OA
Schlögl A, Vidaurre C, Sander T. 2011. BioSig: The free and open source software library for biomedical signal processing. Computational Intelligence and Neuroscience. 2011.
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2011 | Journal Article | IST-REx-ID: 469   OA
Vyleta N, Smith S. 2011. Spontaneous glutamate release is independent of calcium influx and tonically activated by the calcium-sensing receptor. European Journal of Neuroscience. 31(12), 4593–4606.
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2011 | Conference Paper | IST-REx-ID: 3356
Boker U, Chatterjee K, Henzinger TA, Kupferman O. 2011. Temporal specifications with accumulative values. LICS: Logic in Computer Science
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2011 | Technical Report | IST-REx-ID: 5383   OA
Wies T, Muñiz M, Kuncak V. 2011. On an efficient decision procedure for imperative tree data structures, IST Austria, 25p.
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2010 | Journal Article | IST-REx-ID: 3718
Guzmán J, Schmidt H, Franke H, Krügel U, Eilers J, Illes P, Gerevich Z. 2010. P2Y1 receptors inhibit long-term depression in the prefrontal cortex. Neuropharmacology. 59(6), 406–415.
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2010 | Conference Paper | IST-REx-ID: 3782
Chen C, Freedman D. 2010. Topology noise removal for curve  and surface evolution. Conference proceedings MCV 2010. MCV: Medical Computer Vision, LNCS, vol. 6533. 31–42.
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2010 | Journal Article | IST-REx-ID: 3787   OA
Palero F, Hall S, Clark P, Johnston D, Mackenzie Dodds J, Thatje S. 2010. DNA extraction from formalin-fixed tissue: new light from the deep sea. Scientia Marina. 74(3), 465–470.
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2010 | Conference Paper | IST-REx-ID: 3794
Lampert C, Krömer O. 2010. Weakly-paired maximum covariance analysis for multimodal dimensionality reduction and transfer learning. ECCV: European Conference on Computer Vision, LNCS, vol. 6312. 566–579.
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2010 | Journal Article | IST-REx-ID: 3833
Jonas PM, Hefft S. 2010. GABA release at terminals of CCK-interneurons: synchrony, asynchrony and modulation by cannabinoid receptors (commentary on Ali & Todorova). The European Journal of Neuroscience. 31(7), 1194–1195.
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2010 | Conference Paper | IST-REx-ID: 3838   OA
Henzinger TA, Mateescu M, Mikeev L, Wolf V. 2010. Hybrid numerical solution of the chemical master equation. CMSB: Computational Methods in Systems Biology 55–65.
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2010 | Conference Paper | IST-REx-ID: 3840
Henzinger TA. 2010. From boolean to quantitative notions of correctness. POPL: Principles of Programming Languages vol. 45. 157–158.
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2010 | Conference Paper | IST-REx-ID: 3852   OA
Chatterjee K, Majumdar R. 2010. Discounting in games across time scales. GandALF: Games, Automata, Logic, and Formal Verification, EPTCS, vol. 25. 22–29.
View | Files available | DOI | arXiv
 
2010 | Conference Paper | IST-REx-ID: 3845   OA
Henzinger TA, Hottelier T, Kovács L, Rybalchenko A. 2010. Aligators for arrays. LPAR: Logic for Programming, Artificial Intelligence, and Reasoning, LNCS, vol. 6397. 348–356.
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2010 | Conference Paper | IST-REx-ID: 3864   OA
Chatterjee K, Henzinger TA, Jobstmann B, Singh R. 2010. Measuring and synthesizing systems in probabilistic environments. CAV: Computer Aided Verification, LNCS, vol. 6174. 380–395.
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2010 | Journal Article | IST-REx-ID: 4134
Bridle J, Polechova J, Kawata M, Butlin R. 2010. Why is adaptation prevented at ecological margins? New insights from individual-based simulations. Ecology Letters. 13(4), 485–494.
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2010 | Conference Paper | IST-REx-ID: 4381   OA
Henzinger TA, Tomar A, Singh V, Wies T, Zufferey D. 2010. FlexPRICE: Flexible provisioning of resources in a cloud environment. CLOUD: Cloud Computing 83–90.
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2010 | Conference Paper | IST-REx-ID: 4362
Singh V. 2010. Runtime verification for software transactional memories. RV: International Conference on Runtime Verification, LNCS, vol. 6418. 421–435.
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2010 | Conference Paper | IST-REx-ID: 489   OA
Cristau J, David C, Horn F. 2010. How do we remember the past in randomised strategies? . Proceedings of GandALF 2010. GandALF: Games, Automata, Logic, and Formal Verification, EPTCS, vol. 25. 30–39.
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2010 | Conference Paper | IST-REx-ID: 4393
Cerny P, Henzinger TA, Radhakrishna A. 2010. Simulation distances. CONCUR: Concurrency Theory, LNCS, vol. 6269. 235–268.
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2010 | Technical Report | IST-REx-ID: 5389   OA
Cerny P, Henzinger TA, Radhakrishna A. 2010. Simulation distances, IST Austria, 24p.
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2010 | Conference Paper | IST-REx-ID: 3857
Chatterjee K, Henzinger TA. 2010. Probabilistic Automata on infinite words: decidability and undecidability results. ATVA: Automated Technology for Verification and Analysis, LNCS, vol. 6252. 1–16.
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2010 | Technical Report | IST-REx-ID: 5391   OA
Cerny P, Radhakrishna A, Zufferey D, Chaudhuri S, Alur R. 2010. Model checking of linearizability of concurrent list implementations, IST Austria, 27p.
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2010 | Journal Article | IST-REx-ID: 3303   OA
Weissman D, Feldman M, Fisher D. 2010. The rate of fitness-valley crossing in sexual populations. Genetics. 186(4), 1389–1410.
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2010 | Conference Paper | IST-REx-ID: 3719   OA
Feret J, Henzinger TA, Koeppl H, Petrov T. 2010. Lumpability abstractions of rule-based systems. MECBIC: Membrane Computing and Biologically Inspired Process Calculi, EPTCS, vol. 40. 142–161.
View | Files available | arXiv
 
2010 | Journal Article | IST-REx-ID: 3776   OA
Barton NH. 2010. Genetic linkage and natural selection. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365(1552), 2559–2569.
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2010 | Journal Article | IST-REx-ID: 3783
Palero F, González Candelas F, Pascual M. 2010. Microsatelight – Pipeline to expedite microsatellite analysis. Journal of Heredity. 102(2), 247–249.
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2010 | Journal Article | IST-REx-ID: 3788
Klopper A, Krens G, Grill S, Heisenberg C-PJ. 2010. Finite-size corrections to scaling behavior in sorted cell aggregates. The European Physical Journal E: Soft Matter and Biological Physics. 33(2), 99–103.
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2010 | Journal Article | IST-REx-ID: 3790   OA
Diz Muñoz A, Krieg M, Bergert M, Ibarlucea Benitez I, Müller D, Paluch E, Heisenberg C-PJ. 2010. Control of directed cell migration in vivo by membrane-to-cortex attachment. PLoS Biology. 8(11), e1000544.
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2010 | Book Chapter | IST-REx-ID: 3795   OA
Edelsbrunner H, Morozov D, Patel A. 2010. The stability of the apparent contour of an orientable 2-manifold. Topological Data Analysis and Visualization: Theory, Algorithms and Applications. , Mathematics and Visualization, 27–42.
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2010 | Journal Article | IST-REx-ID: 3834   OA
Wolf V, Goel R, Mateescu M, Henzinger TA. 2010. Solving the chemical master equation using sliding windows. BMC Systems Biology. 4(42), 1–19.
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2010 | Conference Paper | IST-REx-ID: 3839   OA
Henzinger TA, Hottelier T, Kovács L, Voronkov A. 2010. Invariant and type inference for matrices. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS, vol. 5944. 163–179.
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2010 | Conference Paper | IST-REx-ID: 3858
Chatterjee K, Doyen L. 2010. The complexity of partial-observation parity games. LPAR: Logic for Programming, Artificial Intelligence, and Reasoning, LNCS, vol. 6397. 1–14.
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2010 | Conference Paper | IST-REx-ID: 3860   OA
Chatterjee K, Doyen L, Henzinger TA, Raskin J. 2010. Generalized mean-payoff and energy games. FSTTCS: Foundations of Software Technology and Theoretical Computer Science, LIPIcs, vol. 8. 505–516.
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2010 | Conference Paper | IST-REx-ID: 3853   OA
Chatterjee K, Doyen L, Edelsbrunner H, Henzinger TA, Rannou P. 2010. Mean-payoff automaton expressions. CONCUR: Concurrency Theory, LNCS, vol. 6269. 269–283.
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2010 | Journal Article | IST-REx-ID: 4243   OA
Barton NH, Etheridge A, Véber A. 2010. A new model for evolution in a spatial continuum. Electronic Journal of Probability. 15(7), 162–216.
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2010 | Conference Paper | IST-REx-ID: 3865
Chatterjee K, De Alfaro L, Raman V, Sánchez C. 2010. Analyzing the impact of change in multi-threaded programs. FASE: Fundamental Approaches To Software Engineering, LNCS, vol. 6013. 293–307.
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2010 | Conference Paper | IST-REx-ID: 4382   OA
Guerraoui R, Henzinger TA, Kapalka M, Singh V. 2010. Transactions in the jungle. SPAA: ACM Symposium on Parallel Algorithms and Architectures 263–272.
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2010 | Journal Article | IST-REx-ID: 3772   OA
Barton NH. 2010. Understanding adaptation in large populations. PLoS Genetics. 6(6), e1000987.
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2010 | Journal Article | IST-REx-ID: 3777   OA
Barton NH. 2010. Mutation and the evolution of recombination. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365(1544), 1281–1294.
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2010 | Journal Article | IST-REx-ID: 3789
Quesada-Hernández E, Caneparo L, Schneider S, Winkler S, Liebling M, Fraser S, Heisenberg C-PJ. 2010. Stereotypical cell division orientation controls neural rod midline formation in zebrafish. Current Biology. 20(21), 1966–1972.
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2010 | Conference Paper | IST-REx-ID: 3847   OA
Didier F, Henzinger TA, Mateescu M, Wolf V. 2010. SABRE: A tool for the stochastic analysis of biochemical reaction networks. QEST: Quantitative Evaluation of Systems 193–194.
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2010 | Journal Article | IST-REx-ID: 3842
Didier F, Henzinger TA, Mateescu M, Wolf V. 2010. Fast adaptive uniformization of the chemical master equation. IET Systems Biology. 4(6), 441–452.
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2010 | Conference Paper | IST-REx-ID: 3854
Chatterjee K, Horn F, Löding C. 2010. Obliging games. CONCUR: Concurrency Theory, LNCS, vol. 6269. 284–296.
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2010 | Thesis | IST-REx-ID: 3962
Pflicke H. 2010.   Dendritic cell migration across basement membranes in the skin, IST Austria,p.
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2010 | Conference Paper | IST-REx-ID: 3866   OA
Bloem R, Chatterjee K, Greimel K, Henzinger TA, Jobstmann B. 2010. Robustness in the presence of liveness. CAV: Computer Aided Verification, LNCS, vol. 6174. 410–424.
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2010 | Conference (Editor) | IST-REx-ID: 3859
Chatterjee K, Henzinger TA eds. 2010. Formal modeling and analysis of timed systems, Springer,p.
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2010 | Journal Article | IST-REx-ID: 3861   OA
Chatterjee K, Henzinger TA, Piterman N. 2010. Strategy logic. Information and Computation. 208(6), 677–693.
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2010 | Conference Paper | IST-REx-ID: 4369   OA
Nickovic D, Piterman N. 2010. From MTL to deterministic timed automata. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, vol. 6246. 152–167.
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2010 | Journal Article | IST-REx-ID: 474
Barton NH, Kelleher J, Etheridge A. 2010. A new model for extinction and recolonization in two dimensions: Quantifying phylogeography. Evolution. 64(9), 2701–2715.
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2010 | Conference Paper | IST-REx-ID: 4388
Chatterjee K, Henzinger TA, Jobstmann B, Radhakrishna A. 2010. GIST: A solver for probabilistic games. CAV: Computer Aided Verification, LNCS, vol. 6174. 665–669.
View | Files available | DOI | Download (ext.) | arXiv
 
2010 | Conference Paper | IST-REx-ID: 4390
Cerny P, Radhakrishna A, Zufferey D, Chaudhuri S, Alur R. 2010. Model checking of linearizability of concurrent list implementations. CAV: Computer Aided Verification, LNCS, vol. 6174. 465–479.
View | Files available | DOI
 
2010 | Journal Article | IST-REx-ID: 3773   OA
Barton NH. 2010. What role does natural selection play in speciation? Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365(1547), 1825–1840.
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2010 | Journal Article | IST-REx-ID: 3785
Palero F, Abello P, Macpherson E, Matthee C, Pascual M. 2010. Genetic diversity levels in fishery-exploited spiny lobsters of the Genus Palinurus (Decapoda: Achelata). Journal of Crustacean Biology. 30(4), 658–663.
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2010 | Journal Article | IST-REx-ID: 3901   OA
Bendich P, Edelsbrunner H, Kerber M. 2010. Computing robustness and persistence for images. IEEE Transactions of Visualization and Computer Graphics. 16(6), 1251–1260.
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2010 | Conference Paper | IST-REx-ID: 3848
Bendich P, Edelsbrunner H, Morozov D, Patel A. 2010. The robustness of level sets. ESA: European Symposium on Algorithms, LNCS, vol. 6346. 1–10.
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2010 | Conference Paper | IST-REx-ID: 3850
Berberich E, Halperin D, Kerber M, Pogalnikova R. 2010. Polygonal reconstruction from approximate offsets. EuroCG: European Workshop on Computational Geometry 12–23.
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2010 | Journal Article | IST-REx-ID: 3867   OA
Chatterjee K, Doyen L, Henzinger TA. 2010. Expressiveness and closure properties for quantitative languages. Logical Methods in Computer Science. 6(3), 1–23.
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2010 | Book Chapter | IST-REx-ID: 4339   OA
Bergmann J, Danowski P. 2010. Ist Bibliothek 2.0 überhaupt noch relevant? – Eine Einleitung in das Handbuch. Handbuch Bibliothek 2.0. Bibliotheks- und Informationspraxis 41 5–20.
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2010 | Book | IST-REx-ID: 4346   OA
Danowski P, Bergmann J. 2010. Handbuch Bibliothek 2.0, De Gruyter,p.
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2010 | Conference Paper | IST-REx-ID: 4396   OA
Beyer D, Henzinger TA, Théoduloz G, Zufferey D. 2010. Shape refinement through explicit heap analysis. FASE: Fundamental Approaches To Software Engineering, LNCS, vol. 6013. 263–277.
View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 4389   OA
Doyen L, Henzinger TA, Legay A, Nickovic D. 2010. Robustness of sequential circuits. ACSD: Application of Concurrency to System Design 77–84.
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2010 | Journal Article | IST-REx-ID: 533
Hoenicke J, Leino K, Podelski A, Schäf M, Wies T. 2010. Doomed program points. Formal Methods in System Design. 37(2–3), 171–199.
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2010 | Conference Paper | IST-REx-ID: 3855
Chatterjee K, Doyen L, Henzinger TA. 2010. Qualitative analysis of partially-observable Markov Decision Processes. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 6281. 258–269.
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2010 | Journal Article | IST-REx-ID: 2409   OA
Kupczok A, Schmidt H, Von Haeseler A. 2010. Accuracy of phylogeny reconstruction methods combining overlapping gene data sets . Algorithms for Molecular Biology. 5(1), 37.
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2010 | Journal Article | IST-REx-ID: 3774
Senn H, Swanson G, Goodman S, Barton NH, Pemberton J. 2010. Phenotypic correlates of hybridisation between red and sika deer (genus Cervus). Journal of Animal Ecology. 79(2), 414–425.
View | DOI | PubMed | Europe PMC
 
2010 | Journal Article | IST-REx-ID: 3779   OA
Rosas U, Barton NH, Copsey L, Barbier De Reuille P, Coen E. 2010. Cryptic variation between species and the basis of hybrid performance. PLoS Biology. 8(7), e1000429.
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2010 | Conference Paper | IST-REx-ID: 3793
Nowozin S, Gehler P, Lampert C. 2010. On parameter learning in CRF-based approaches to object class image segmentation. ECCV: European Conference on Computer Vision, LNCS, vol. 6316. 98–111.
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2010 | Journal Article | IST-REx-ID: 3832   OA
Guzmán J, Jonas PM. 2010. Beyond TARPs: The growing list of auxiliary AMPAR subunits. Neuron. 66(1), 8–10.
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2010 | Journal Article | IST-REx-ID: 3604
Senn H, Goodman S, Swanson G, Barton NH, Pemberton J. 2010. Investigating temporal changes in hybridisation and introgression between invasive sika (Cervus nippon) and native red deer (Cervus elaphus) on the Kintyre Peninsula, Scotland. Molecular Ecology. 19(5), 910–924.
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2010 | Conference Paper | IST-REx-ID: 3851   OA
Chatterjee K, Doyen L. 2010. Energy parity games. ICALP: Automata, Languages and Programming, 37th International Colloquium, LNCS, vol. 6199. 599–610.
View | Files available | DOI | Download (ext.) | arXiv
 
2010 | Conference Paper | IST-REx-ID: 3849   OA
Bendich P, Edelsbrunner H, Kerber M, Patel A. 2010. Persistent homology under non-uniform error. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 6281. 12–23.
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2010 | Journal Article | IST-REx-ID: 3868   OA
Chatterjee K, De Alfaro L, Majumdar R, Raman V. 2010. Algorithms for game metrics. Logical Methods in Computer Science. 6(3), 1–27.
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