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2673 Publications

2013 | Journal Article | IST-REx-ID: 522
Thymic medullar conduits-associated podoplanin promotes natural regulatory T cells
E. Fuertbauer, J. Zaujec, P. Uhrin, I. Raab, M. Weber, H. Schachner, M. Bauer, G. Schütz, B. Binder, M.K. Sixt, D. Kerjaschki, H. Stockinger, Immunology Letters 154 (2013) 31–41.
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2013 | Technical Report | IST-REx-ID: 5403   OA
Qualitative analysis of concurrent mean-payoff games
K. Chatterjee, R. Ibsen-Jensen, Qualitative Analysis of Concurrent Mean-Payoff Games, IST Austria, 2013.
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2013 | Conference Paper | IST-REx-ID: 2327
From model checking to model measuring
T.A. Henzinger, J. Otop, 8052 (2013) 273–287.
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2013 | Conference Paper | IST-REx-ID: 1374   OA
Infinite-state games with finitary conditions
K. Chatterjee, N. Fijalkow, in:, 22nd EACSL Annual Conference on Computer Science Logic, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp. 181–196.
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2013 | Conference Paper | IST-REx-ID: 2000   OA
TTP: Tool for tumor progression
J. Reiter, I. Božić, K. Chatterjee, M. Nowak, in:, Proceedings of 25th Int. Conf. on Computer Aided Verification, Springer, 2013, pp. 101–106.
View | Files available | DOI | Download (ext.) | arXiv
 
2013 | Journal Article | IST-REx-ID: 2858   OA
The effect of one additional driver mutation on tumor progression
J. Reiter, I. Božić, B. Allen, K. Chatterjee, M. Nowak, Evolutionary Applications 6 (2013) 34–45.
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2013 | Journal Article | IST-REx-ID: 2884
Cell adhesion mechanics of zebrafish gastrulation
J.-L. Maître, H. Berthoumieux, G. Krens, G. Salbreux, F. Julicher, E. Paluch, C.-P.J. Heisenberg, Medecine Sciences 29 (2013) 147–150.
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2013 | Conference Paper | IST-REx-ID: 2295   OA View | Files available | DOI
 
2013 | Conference Paper | IST-REx-ID: 2182
Quantitative abstraction refinement
P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Proceedings of the 40th Annual ACM SIGPLAN-SIGACT Symposium on Principles of Programming Language, ACM, 2013, pp. 115–128.
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2013 | Technical Report | IST-REx-ID: 5408
The complexity of partial-observation stochastic parity games with finite-memory strategies
K. Chatterjee, L. Doyen, S. Nain, M. Vardi, The Complexity of Partial-Observation Stochastic Parity Games with Finite-Memory Strategies, IST Austria, 2013.
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2013 | Technical Report | IST-REx-ID: 5410
Automatic generation of alternative starting positions for traditional board games
U. Ahmed, K. Chatterjee, S. Gulwani, Automatic Generation of Alternative Starting Positions for Traditional Board Games, IST Austria, 2013.
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2013 | Conference Paper | IST-REx-ID: 2517   OA
Formalizing and reasoning about quality
S. Almagor, U. Boker, O. Kupferman, 7966 (2013) 15–27.
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2013 | Conference Paper | IST-REx-ID: 2447   OA
Automating separation logic using SMT
R. Piskac, T. Wies, D. Zufferey, 8044 (2013) 773–789.
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2013 | Journal Article | IST-REx-ID: 2839   OA
Interstitial dendritic cell guidance by haptotactic chemokine gradients
M. Weber, R. Hauschild, J. Schwarz, C. Moussion, I. De Vries, D. Legler, S. Luther, M.T. Bollenbach, M.K. Sixt, Science 339 (2013) 328–332.
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2012 | Conference Paper | IST-REx-ID: 2049   OA
Lapin: An efficient authentication protocol based on ring-LPN
S. Heyse, E. Kiltz, V. Lyubashevsky, C. Paar, K.Z. Pietrzak, in:, Conference Proceedings FSE 2012, Springer, 2012, pp. 346–365.
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2012 | Journal Article | IST-REx-ID: 2912
Configuration space for shortest networks
H. Edelsbrunner, N. Strelkova, Uspekhi Mat. Nauk 67 (2012) 203–204.
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2012 | Journal Article | IST-REx-ID: 2943   OA
Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions
N. Hadizadeh Yazdi, C.C. Guet, R. Johnson, J. Marko, Molecular Microbiology 86 (2012) 1318–1333.
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2012 | Journal Article | IST-REx-ID: 2931
A dual decomposition approach to feature correspondence
L. Torresani, V. Kolmogorov, C. Rother, IEEE Transactions on Pattern Analysis and Machine Intelligence 35 (2012) 259–271.
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2012 | Journal Article | IST-REx-ID: 2917
The game of active search for extra terrestrial intelligence Breaking the Great Silence
H. Vladar, International Journal of Astrobiology 12 (2012) 53–62.
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2012 | Conference Paper | IST-REx-ID: 2974   OA
Commitments and efficient zero knowledge proofs from learning parity with noise
A. Jain, S. Krenn, K.Z. Pietrzak, A. Tentes, in:, X. Wang, K. Sako (Eds.), Springer, 2012, pp. 663–680.
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2012 | Journal Article | IST-REx-ID: 2962   OA
A novel approach for choosing summary statistics in approximate Bayesian computation
S. Aeschbacher, M. Beaumont, A. Futschik, Genetics 192 (2012) 1027–1047.
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2012 | Conference Paper | IST-REx-ID: 3136
Delayed continuous time Markov chains for genetic regulatory circuits
C.C. Guet, A. Gupta, T.A. Henzinger, M. Mateescu, A. Sezgin, in:, Springer, 2012, pp. 294–309.
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2012 | Conference Paper | IST-REx-ID: 3155   OA
Synchronous interface theories and time triggered scheduling
B. Delahaye, U. Fahrenberg, T.A. Henzinger, A. Legay, D. Nickovic, in:, Springer, 2012, pp. 203–218.
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2012 | Conference Paper | IST-REx-ID: 3129   OA
Annotating simplices with a homology basis and its applications
O. Busaryev, S. Cabello, C. Chen, T. Dey, Y. Wang, in:, Springer, 2012, pp. 189–200.
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2012 | Journal Article | IST-REx-ID: 3131   OA
Limits to the rate of adaptive substitution in sexual populations
D. Weissman, N.H. Barton, PLoS Genetics 8 (2012).
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2012 | Journal Article | IST-REx-ID: 3117   OA
Minimizing a sum of submodular functions
V. Kolmogorov, Discrete Applied Mathematics 160 (2012) 2246–2258.
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2012 | Journal Article | IST-REx-ID: 3167
NextGen speaks 13
M. Weber, Science 336 (2012) 32–34.
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2012 | Journal Article | IST-REx-ID: 3256   OA
Dual complexes of cubical subdivisions of ℝn
H. Edelsbrunner, M. Kerber, Discrete & Computational Geometry 47 (2012) 393–414.
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2012 | Journal Article | IST-REx-ID: 3244
Die Zeit des Abwartens ist vorbei!
P. Danowski, BuB – Forum Bibliothek und Information 64 (2012) 284.
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2012 | Conference Paper | IST-REx-ID: 3282   OA
Message authentication, revisited
Y. Dodis, K.Z. Pietrzak, E. Kiltz, D. Wichs, in:, Springer, 2012, pp. 355–374.
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2012 | Conference Paper | IST-REx-ID: 3124
Approximating marginals using discrete energy minimization
F. Korc, V. Kolmogorov, C. Lampert, in:, ICML, 2012.
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2012 | Technical Report | IST-REx-ID: 5396   OA
Approximating marginals using discrete energy minimization
F. Korc, V. Kolmogorov, C. Lampert, Approximating Marginals Using Discrete Energy Minimization, IST Austria, 2012.
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2012 | Book Chapter | IST-REx-ID: 5745   OA
Improved Single Pass Algorithms for Resolution Proof Reduction
A. Gupta, in:, Automated Technology for Verification and Analysis, Springer Berlin Heidelberg, Berlin, Heidelberg, 2012, pp. 107–121.
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2012 | Journal Article | IST-REx-ID: 3249
Simulation distances
P. Cerny, T.A. Henzinger, A. Radhakrishna, Theoretical Computer Science 413 (2012) 21–35.
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2012 | Journal Article | IST-REx-ID: 2950
Forces driving epithelial spreading in zebrafish gastrulation
M. Behrndt, G. Salbreux, P. Campinho, R. Hauschild, F. Oswald, J. Roensch, S. Grill, C.-P.J. Heisenberg, Science 338 (2012) 257–260.
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2012 | Technical Report | IST-REx-ID: 5377
Mean-payoff pushdown games
K. Chatterjee, Y. Velner, Mean-Payoff Pushdown Games, IST Austria, 2012.
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2012 | Journal Article | IST-REx-ID: 2967
Algorithmic analysis of array-accessing programs
R. Alur, P. Cerny, S. Weinstein, ACM Transactions on Computational Logic (TOCL) 13 (2012).
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2012 | Conference Paper | IST-REx-ID: 2955   OA
Partial-observation stochastic games: How to win when belief fails
K. Chatterjee, L. Doyen, in:, Proceedings of the 2012 27th Annual ACM/IEEE Symposium on Logic in Computer Science, IEEE, 2012.
View | Files available | DOI | Download (ext.) | arXiv
 
2012 | Conference Paper | IST-REx-ID: 2936   OA
Finite automata with time delay blocks
K. Chatterjee, T.A. Henzinger, V. Prabhu, in:, Roceedings of the Tenth ACM International Conference on Embedded Software, ACM, 2012, pp. 43–52.
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2012 | Conference Paper | IST-REx-ID: 3251   OA
Ideal abstractions for well structured transition systems
D. Zufferey, T. Wies, T.A. Henzinger, in:, Springer, 2012, pp. 445–460.
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2012 | Journal Article | IST-REx-ID: 3314
Discounting and averaging in games across time scales
K. Chatterjee, R. Majumdar, International Journal of Foundations of Computer Science 23 (2012) 609–625.
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2012 | Conference Paper | IST-REx-ID: 496   OA
Interpretations in trees with countably many branches
A. Rabinovich, S. Rubin, in:, IEEE, 2012.
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2012 | Conference Paper | IST-REx-ID: 2715
Average case analysis of the classical algorithm for Markov decision processes with Büchi objectives
K. Chatterjee, M. Joglekar, N. Shah, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 461–473.
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2012 | Conference Paper | IST-REx-ID: 3162   OA
Parametric identification of temporal properties
E. Asarin, A. Donzé, O. Maler, D. Nickovic, in:, Springer, 2012, pp. 147–160.
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2012 | Journal Article | IST-REx-ID: 2949
The medial entorhinal cortex keeps Up
D. Dupret, J.L. Csicsvari, Nature Neuroscience 15 (2012) 1471–1472.
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2012 | Conference Paper | IST-REx-ID: 2937   OA
Full proof cryptography: Verifiable compilation of efficient zero-knowledge protocols
J. Almeida, M. Barbosa, E. Bangerter, G. Barthe, S. Krenn, S. Béguelin, in:, Proceedings of the 2012 ACM Conference on Computer and Communications Security, ACM, 2012, pp. 488–500.
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2012 | Journal Article | IST-REx-ID: 2951
Adhesion functions in cell sorting by mechanically coupling the cortices of adhering cells
J.-L. Maître, H. Berthoumieux, G. Krens, G. Salbreux, F. Julicher, E. Paluch, C.-P.J. Heisenberg, Science 338 (2012) 253–256.
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2012 | Journal Article | IST-REx-ID: 2968   OA
A likelihood based comparison of population histories in a parasitoid guild
K. Lohse, N.H. Barton, G. Melika, G. Stone, Molecular Ecology 21 (2012) 4605–4617.
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2012 | Journal Article | IST-REx-ID: 2970
Investigating the principles of morphogen gradient formation: from tissues to cells
A. Kicheva, M.T. Bollenbach, O. Wartlick, F. Julicher, M. Gonzalez Gaitan, Current Opinion in Genetics & Development 22 (2012) 527–532.
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2012 | Journal Article | IST-REx-ID: 2963 View | DOI
 
2012 | Journal Article | IST-REx-ID: 3156
Dispersal and gene flow in the rare parasitic Large Blue butterfly Maculinea arion
L.V. Ugelvig, A. Andersen, J. Boomsma, D. Nash, Molecular Ecology 21 (2012) 3224–3236.
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2012 | Journal Article | IST-REx-ID: 3118   OA
Tracking surfaces with evolving topology
M. Bojsen-Hansen, H. Li, C.J. Wojtan, ACM Transactions on Graphics 31 (2012).
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2012 | Journal Article | IST-REx-ID: 3120   OA
Fano 3 folds in codimension 4 Tom and Jerry Part I
G. Brown, M. Kerber, M. Reid, Compositio Mathematica 148 (2012) 1171–1194.
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2012 | Journal Article | IST-REx-ID: 3132
Two pathways ensuring social harmony
M. Konrad, T. Pamminger, S. Foitzik, Naturwissenschaften 99 (2012) 627–636.
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2012 | Journal Article | IST-REx-ID: 3245
Spurred by resistance mechanosensation in collective migration
M. Behrndt, C.-P.J. Heisenberg, Developmental Cell 22 (2012) 3–4.
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2012 | Journal Article | IST-REx-ID: 3257   OA
Generalized roof duality and bisubmodular functions
V. Kolmogorov, Discrete Applied Mathematics 160 (2012) 416–426.
View | Files available | DOI | Download (ext.) | arXiv
 
2012 | Journal Article | IST-REx-ID: 3310   OA
A point calculus for interlevel set homology
P. Bendich, S. Cabello, H. Edelsbrunner, Pattern Recognition Letters 33 (2012) 1436–1444.
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2012 | Journal Article | IST-REx-ID: 3168
Lumpability abstractions of rule based systems
J. Feret, T.A. Henzinger, H. Koeppl, T. Petrov, Theoretical Computer Science 431 (2012) 137–164.
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2012 | Journal Article | IST-REx-ID: 3846   OA
A survey of stochastic ω regular games
K. Chatterjee, T.A. Henzinger, Journal of Computer and System Sciences 78 (2012) 394–413.
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2012 | Journal Article | IST-REx-ID: 2848   OA
Evolutionary game dynamics in populations with different learners
K. Chatterjee, D. Zufferey, M. Nowak, Journal of Theoretical Biology 301 (2012) 161–173.
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2012 | Conference Paper | IST-REx-ID: 2956
Mean payoff pushdown games
K. Chatterjee, Y. Velner, in:, Proceedings of the 2012 27th Annual ACM/IEEE Symposium on Logic in Computer Science, IEEE, 2012.
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2012 | Conference Paper | IST-REx-ID: 3341   OA
Robustness of structurally equivalent concurrent parity games
K. Chatterjee, in:, Springer, 2012, pp. 270–285.
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2012 | Conference Paper | IST-REx-ID: 3252   OA
Synthesizing protocols for digital contract signing
K. Chatterjee, V. Raman, in:, Springer, 2012, pp. 152–168.
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2012 | Conference Paper | IST-REx-ID: 497   OA
Faster algorithms for alternating refinement relations
K. Chatterjee, S. Chaubal, P. Kamath, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 167–182.
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2012 | Technical Report | IST-REx-ID: 5378
Faster algorithms for alternating refinement relations
K. Chatterjee, S. Chaubal, P. Kamath, Faster Algorithms for Alternating Refinement Relations, IST Austria, 2012.
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2012 | Conference Paper | IST-REx-ID: 3125   OA
Augmented attribute representations
V. Sharmanska, N. Quadrianto, C. Lampert, in:, Springer, 2012, pp. 242–255.
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2012 | Journal Article | IST-REx-ID: 2318   OA
Absence of bound states implies non-negativity of the scattering length
R. Seiringer, Journal of Spectral Theory 2 (2012) 321–328.
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2012 | Journal Article | IST-REx-ID: 2902
Fractal and computational geometry for generalizing cartographic objects
H. Edelsbrunner, O. Musin, A. Ukhalov, O. Yakimova, V. Alexeev, V. Bogaevskaya, A. Gorohov, M. Preobrazhenskaya, Modeling and Analysis of Information Systems 19 (2012) 152–160.
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2012 | Conference Paper | IST-REx-ID: 2825
Dynamic pruning of factor graphs for maximum marginal prediction
C. Lampert, in:, Neural Information Processing Systems, 2012, pp. 82–90.
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2012 | Journal Article | IST-REx-ID: 2849   OA
On the configuration space of Steiner minimal trees
H. Edelsbrunner, N. Strelkova, Russian Mathematical Surveys 67 (2012) 1167–1168.
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2012 | Journal Article | IST-REx-ID: 2945
HEVs, lymphatics and homeostatic immune cell trafficking in lymph nodes
J. Girard, C. Moussion, R. Förster, Nature Reviews Immunology 12 (2012) 762–773.
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2012 | Journal Article | IST-REx-ID: 2938 View | DOI
 
2012 | Journal Article | IST-REx-ID: 2952
Convergent extension Using collective cell migration and cell intercalation to shape embryos
M. Tada, C.-P.J. Heisenberg, Development 139 (2012) 3897–3904.
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2012 | Journal Article | IST-REx-ID: 2969   OA
Miniature IPSCs in hippocampal granule cells are triggered by voltage-gated Ca^(2+) channels via microdomain coupling
S. Goswami, I. Bucurenciu, P.M. Jonas, Journal of Neuroscience 32 (2012) 14294–14304.
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2012 | Conference Paper | IST-REx-ID: 2971
Interactive labeling of image segmentation hierarchies
G. Zankl, Y. Haxhimusa, A. Ion, in:, Springer, 2012, pp. 11–20.
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2012 | Conference Paper | IST-REx-ID: 3119   OA
Controlling liquids using meshes
K. Raveendran, N. Thuerey, C.J. Wojtan, G. Turk, in:, Proceedings of the ACM SIGGRAPH/Eurographics Symposium on Computer Animation, ACM, 2012, pp. 255–264.
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2012 | Journal Article | IST-REx-ID: 3121   OA
Coactivation of multiple tightly coupled calcium channels triggers spontaneous release of GABA
C. Williams, W. Chen, C. Lee, D. Yaeger, N. Vyleta, S. Smith, Nature Neuroscience 15 (2012) 1195–1197.
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2012 | Conference Paper | IST-REx-ID: 3133   OA
Alexander duality for functions: The persistent behavior of land and water and shore
H. Edelsbrunner, M. Kerber, in:, Proceedings of the Twenty-Eighth Annual Symposium on Computational Geometry , ACM, 2012, pp. 249–258.
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2012 | Conference Paper | IST-REx-ID: 3126
Information theoretic clustering using minimal spanning trees
A. Müller, S. Nowozin, C. Lampert, in:, Springer, 2012, pp. 205–215.
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2012 | Journal Article | IST-REx-ID: 3164
Guest editorial: Special issue on structured prediction and inference
M. Blaschko, C. Lampert, International Journal of Computer Vision 99 (2012) 257–258.
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2012 | Conference Paper | IST-REx-ID: 3265
Image segmentation by figure-ground composition into maximal cliques
A. Ion, J. Carreira, C. Sminchisescu, in:, IEEE, 2012.
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2012 | Book Chapter | IST-REx-ID: 3277
Can the evolution of multicellularity be anticipated in the exploration of the solar system?
H. de Vladar, J. Chela Flores, in:, Life on Earth and Other Planetary Bodies, Springer, 2012, pp. 387–405.
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2012 | Journal Article | IST-REx-ID: 3289   OA
A vaccinia virus-driven interplay between the MKK4/7-JNK1/2 pathway and cytoskeleton reorganization
A. Pereira, F. Leite, B. Brasil, J. Soares Martins, A. Torres, P. Pimenta, T. Souto Padrón, P. Tranktman, P. Ferreira, E. Kroon, C. Bonjardim, Journal of Virology 86 (2012) 172–184.
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2012 | Journal Article | IST-REx-ID: 3258   OA
Active dendrites support efficient initiation of dendritic spikes in hippocampal CA3 pyramidal neurons
S. Kim, J. Guzmán, H. Hu, P.M. Jonas, Nature Neuroscience 15 (2012) 600–606.
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2012 | Conference Paper | IST-REx-ID: 3253
Abstract domains for automated reasoning about list manipulating programs with infinite data
A. Bouajjani, C. Dragoi, C. Enea, M. Sighireanu, in:, Springer, 2012, pp. 1–22.
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2012 | Thesis | IST-REx-ID: 2964
Active properties of hippocampal CA3 pyramidal neuron dendrites
S. Kim, Active Properties of Hippocampal CA3 Pyramidal Neuron Dendrites, IST Austria, 2012.
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2012 | Journal Article | IST-REx-ID: 493   OA
Review of the BCI competition IV
M. Tangermann, K. Müller, A. Aertsen, N. Birbaumer, C. Braun, C. Brunner, R. Leeb, C. Mehring, K. Miller, G. Müller Putz, G. Nolte, G. Pfurtscheller, H. Preissl, G. Schalk, A. Schlögl, C. Vidaurre, S. Waldert, B. Blankertz, Frontiers in Neuroscience 6 (2012).
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2012 | Journal Article | IST-REx-ID: 498   OA
Predicting local adaptation in fragmented plant populations: Implications for restoration genetics
M. Pickup, D. Field, D. Rowell, A. Young, Evolutionary Applications 5 (2012) 913–924.
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2012 | Report | IST-REx-ID: 5398   OA
Actual state of research data @ ISTAustria
J. Porsche, Actual State of Research Data @ ISTAustria, IST Austria, 2012.
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2012 | Journal Article | IST-REx-ID: 3246
Cell adhesion in embryo morphogenesis
V. Barone, C.-P.J. Heisenberg, Current Opinion in Cell Biology 24 (2012) 148–153.
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2012 | Conference Paper | IST-REx-ID: 1384   OA
Conditional model checking: A technique to pass information between verifiers
D. Beyer, T.A. Henzinger, M. Keremoglu, P. Wendler, in:, Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering, ACM, 2012.
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2012 | Journal Article | IST-REx-ID: 3157   OA
The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers
L. Diaz Jr, R. Williams, J. Wu, I. Kinde, J. Hecht, J. Berlin, B. Allen, I. Božić, J. Reiter, M. Nowak, K. Kinzler, K. Oliner, B. Vogelstein, Nature 486 (2012) 537–540.
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2012 | Conference Paper | IST-REx-ID: 2957   OA
Decidable problems for probabilistic automata on infinite words
K. Chatterjee, M. Tracol, in:, Proceedings of the 2012 27th Annual ACM/IEEE Symposium on Logic in Computer Science, IEEE, 2012.
View | Files available | DOI | Download (ext.) | arXiv
 
2012 | Journal Article | IST-REx-ID: 3260   OA
Evolutionary dynamics of biological auctions
K. Chatterjee, J. Reiter, M. Nowak, Theoretical Population Biology 81 (2012) 69–80.
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2012 | Journal Article | IST-REx-ID: 506   OA
Cell migration: Fibroblasts find a new way to get ahead
M.K. Sixt, Journal of Cell Biology 197 (2012) 347–349.
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2012 | Journal Article | IST-REx-ID: 2263   OA
A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors
H. Liang, S. Hippenmeyer, H. Ghashghaei, Biology Open 1 (2012) 1200–1203.
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2012 | Journal Article | IST-REx-ID: 2302
The propagation approach for computing biochemical reaction networks
T.A. Henzinger, M. Mateescu, IEEE ACM Transactions on Computational Biology and Bioinformatics 10 (2012) 310–322.
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2012 | Conference Paper | IST-REx-ID: 2903   OA
The adaptive topology of a digital image
H. Edelsbrunner, O. Symonova, in:, IEEE, 2012, pp. 41–48.
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2012 | Conference Paper | IST-REx-ID: 2915
Multi-modal learning for dynamic tactile sensing
O. Kroemer, C. Lampert, J. Peters, in:, Deutsches Zentrum für Luft und Raumfahrt, 2012.
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2012 | Journal Article | IST-REx-ID: 2958   OA
Hippocampal place cells can encode multiple trial-dependent features through rate remapping
K. Allen, J.N. Rawlins, D. Bannerman, J.L. Csicsvari, Journal of Neuroscience 32 (2012) 14752–14766.
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