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2935 Publications

2013 | Journal Article | IST-REx-ID: 2817 | OA
S. Novak, K. Chatterjee, and M. Nowak, “Density games,” Journal of Theoretical Biology, vol. 334, pp. 26–34, 2013.
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2013 | Journal Article | IST-REx-ID: 2818 | OA
K. Rajan, O. Marre, and G. Tkacik, “Learning quadratic receptive fields from neural responses to natural stimuli,” Neural Computation, vol. 25, no. 7, pp. 1661–1692, 2013.
View | DOI | Download Preprint (ext.) | arXiv
 
2013 | Conference Paper | IST-REx-ID: 2819 | OA
K. Chatterjee and V. Prabhu, “Quantitative timed simulation functions and refinement metrics for real-time systems,” in Proceedings of the 16th International Conference on Hybrid Systems: Computation and Control, Philadelphia, PA USA, 2013, vol. 1, pp. 273–282.
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2013 | Conference Paper | IST-REx-ID: 2820
K. Chatterjee, A. Kößler, and U. Schmid, “Automated analysis of real-time scheduling using graph games,” in Proceedings of the 16th International conference on Hybrid systems: Computation and control, Philadelphia, PA, United States, 2013, pp. 163–172.
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2013 | Journal Article | IST-REx-ID: 2821 | OA
E. Remy et al., “A major facilitator superfamily transporter plays a dual role in polar auxin transport and drought stress tolerance in Arabidopsis,” Plant Cell, vol. 25, no. 3, pp. 901–926, 2013.
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2013 | Journal Article | IST-REx-ID: 2822 | OA
C. Topp et al., “3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture,” PNAS, vol. 110, no. 18, pp. E1695–E1704, 2013.
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2013 | Journal Article | IST-REx-ID: 2823
M. Pickup et al., “Post-fire recovery of revegetated woodland communities in south-eastern Australia,” Austral Ecology, vol. 38, no. 3, pp. 300–312, 2013.
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2013 | Journal Article | IST-REx-ID: 2824
K. Chatterjee and V. Prabhu, “Synthesis of memory-efficient, clock-memory free, and non-Zeno safety controllers for timed systems,” Information and Computation, vol. 228–229, pp. 83–119, 2013.
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2013 | Journal Article | IST-REx-ID: 2827 | OA
Y. Du et al., “Salicylic acid interferes with clathrin-mediated endocytic protein trafficking,” PNAS, vol. 110, no. 19, pp. 7946–7951, 2013.
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2013 | Journal Article | IST-REx-ID: 2828 | OA
V. Kolmogorov and S. Živný, “The complexity of conservative valued CSPs,” Journal of the ACM, vol. 60, no. 2, 2013.
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2013 | Journal Article | IST-REx-ID: 2829 | OA
L. Shi, M. Avila, and B. Hof, “Scale invariance at the onset of turbulence in couette flow,” Physical Review Letters, vol. 110, no. 20, 2013.
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2013 | Journal Article | IST-REx-ID: 2830
C. Moussion and M. K. Sixt, “A conduit to amplify innate immunity,” Immunity, vol. 38, no. 5, pp. 853–854, 2013.
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2013 | Journal Article | IST-REx-ID: 2831 | OA
K. Chatterjee, M. Henzinger, M. Joglekar, and N. Shah, “Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives,” Formal Methods in System Design, vol. 42, no. 3, pp. 301–327, 2013.
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2013 | Journal Article | IST-REx-ID: 2832 | OA
H. Tanaka et al., “Cell polarity and patterning by PIN trafficking through early endosomal compartments in arabidopsis thaliana,” PLoS Genetics, vol. 9, no. 5, 2013.
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2013 | Journal Article | IST-REx-ID: 2833
C.-P. J. Heisenberg and Y. Bellaïche, “Forces in tissue morphogenesis and patterning,” Cell, vol. 153, no. 5, pp. 948–962, 2013.
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2013 | Journal Article | IST-REx-ID: 2834 | OA
M. Avila, F. Mellibovsky, N. Roland, and B. Hof, “Streamwise-localized solutions at the onset of turbulence in pipe flow,” Physical Review Letters, vol. 110, no. 22, 2013.
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2013 | Journal Article | IST-REx-ID: 2835 | OA
H. Yu et al., “Root ultraviolet b-sensitive1/weak auxin response3 is essential for polar auxin transport in arabidopsis,” Plant Physiology, vol. 162, no. 2, pp. 965–976, 2013.
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2013 | Journal Article | IST-REx-ID: 2836 | OA
K. Chatterjee and V. Raman, “Assume-guarantee synthesis for digital contract signing,” Formal Aspects of Computing, vol. 26, no. 4, pp. 825–859, 2013.
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2013 | Journal Article | IST-REx-ID: 2837 | OA
L. Erdös, A. Knowles, H. Yau, and J. Yin, “The local semicircle law for a general class of random matrices,” Electronic Journal of Probability, vol. 18, no. 59, pp. 1–58, 2013.
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2013 | Journal Article | IST-REx-ID: 2838 | OA
G. Arquè Fuste, A. Casanovas, and M. Dierssen, “Dyrk1A is dynamically expressed on subsets of motor neurons and in the neuromuscular junction: Possible role in Down syndrome,” PLoS One, vol. 8, no. 1, 2013.
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2013 | Journal Article | IST-REx-ID: 2839 | OA
M. Weber et al., “Interstitial dendritic cell guidance by haptotactic chemokine gradients,” Science, vol. 339, no. 6117, pp. 328–332, 2013.
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2013 | Journal Article | IST-REx-ID: 2840
T. Van Cauter, J. Camon, A. Alvernhe, C. Elduayen, F. Sargolini, and É. Save, “Distinct roles of medial and lateral entorhinal cortex in spatial cognition,” Cerebral Cortex, vol. 23, no. 2, pp. 451–459, 2013.
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2013 | Journal Article | IST-REx-ID: 2841
H. Morita and C.-P. J. Heisenberg, “Holding on and letting go: Cadherin turnover in cell intercalation,” Developmental Cell, vol. 24, no. 6, pp. 567–569, 2013.
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2013 | Journal Article | IST-REx-ID: 2842 | OA
N. H. Barton, A. Etheridge, J. Kelleher, and A. Véber, “Inference in two dimensions: Allele frequencies versus lengths of shared sequence blocks,” Theoretical Population Biology, vol. 87, no. 1, pp. 105–119, 2013.
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2013 | Conference Paper | IST-REx-ID: 2843
H. Edelsbrunner and F. Pausinger, “Stable length estimates of tube-like shapes,” in 17th IAPR International Conference on Discrete Geometry for Computer Imagery, Seville, Spain, 2013, vol. 7749, pp. XV–XIX.
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2013 | Journal Article | IST-REx-ID: 2844
M. Rosquete et al., “An auxin transport mechanism restricts positive orthogravitropism in lateral roots,” Current Biology, vol. 23, no. 9, pp. 817–822, 2013.
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2013 | Journal Article | IST-REx-ID: 2845
T. Rose, P. Schönenberger, K. Jezek, and T. Oertner, “Developmental refinement of vesicle cycling at Schaffer collateral synapses,” Neuron, vol. 77, no. 6, pp. 1109–1121, 2013.
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2013 | Conference Paper | IST-REx-ID: 2847 | OA
K. Bansal, E. Koskinen, T. Wies, and D. Zufferey, “Structural Counter Abstraction,” vol. 7795. Springer, pp. 62–77, 2013.
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2013 | Journal Article | IST-REx-ID: 2850 | OA
G. Tkacik, O. Marre, T. Mora, D. Amodei, M. Berry, and W. Bialek, “The simplest maximum entropy model for collective behavior in a neural network,” Journal of Statistical Mechanics Theory and Experiment, vol. 2013, no. 3, p. P03011, 2013.
View | DOI | Download Preprint (ext.) | arXiv
 
2013 | Journal Article | IST-REx-ID: 2851
M. Berry, G. Tkacik, J. Dubuis, O. Marre, and R. Da Silveira, “A simple method for estimating the entropy of neural activity,” Journal of Statistical Mechanics Theory and Experiment, vol. 2013, no. 3, 2013.
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2013 | Journal Article | IST-REx-ID: 2853 | OA
D. Refardt, T. Bergmiller, and R. Kümmerli, “Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection,” Proceedings of the Royal Society of London Series B Biological Sciences, vol. 280, no. 1759, 2013.
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2013 | Journal Article | IST-REx-ID: 2854 | OA
K. Chatterjee, L. De Alfaro, and T. A. Henzinger, “Strategy improvement for concurrent reachability and turn based stochastic safety games,” Journal of Computer and System Sciences, vol. 79, no. 5, pp. 640–657, 2013.
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2013 | Journal Article | IST-REx-ID: 2855 | OA
S. Hippenmeyer, R. Johnson, and L. Luo, “Mosaic analysis with double markers reveals cell type specific paternal growth dominance,” Cell Reports, vol. 3, no. 3, pp. 960–967, 2013.
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2013 | Journal Article | IST-REx-ID: 2856 | OA
J. Levitz et al., “Optical control of metabotropic glutamate receptors,” Nature Neuroscience, vol. 16, pp. 507–516, 2013.
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2013 | Journal Article | IST-REx-ID: 2857 | OA
S. Szobota, C. Mckenzie, and H. L. Janovjak, “Optical control of ligand-gated ion channels,” Methods in Molecular Biology, vol. 998, pp. 417–435, 2013.
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2013 | Journal Article | IST-REx-ID: 2858 | OA
J. Reiter, I. Božić, B. Allen, K. Chatterjee, and M. Nowak, “The effect of one additional driver mutation on tumor progression,” Evolutionary Applications, vol. 6, no. 1, pp. 34–45, 2013.
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2013 | Journal Article | IST-REx-ID: 2859 | OA
P. Bendich, H. Edelsbrunner, D. Morozov, and A. Patel, “Homology and robustness of level and interlevel sets,” Homology, Homotopy and Applications, vol. 15, no. 1, pp. 51–72, 2013.
View | DOI | Download Preprint (ext.) | arXiv
 
2013 | Journal Article | IST-REx-ID: 2860 | OA
D. Dupret, J. O’Neill, and J. L. Csicsvari, “Dynamic reconfiguration of hippocampal interneuron circuits during spatial learning,” Neuron, vol. 78, no. 1, pp. 166–180, 2013.
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2013 | Journal Article | IST-REx-ID: 2861
V. Botella Soler, J. Oteo, J. Ros, and P. Glendinning, “Lyapunov exponent and topological entropy plateaus in piecewise linear maps,” Journal of Physics A: Mathematical and Theoretical, vol. 46, no. 12, 2013.
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2013 | Journal Article | IST-REx-ID: 2862 | OA
H. Tay et al., “Lethal giant larvae 2 regulates development of the ciliated organ Kupffer’s vesicle,” Development, vol. 140, no. 7, pp. 1550–1559, 2013.
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2013 | Journal Article | IST-REx-ID: 2863 | OA
E. Granot Atedgi, G. Tkačik, R. Segev, and E. Schneidman, “Stimulus-dependent maximum entropy models of neural population codes,” PLoS Computational Biology, vol. 9, no. 3, 2013.
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2013 | Journal Article | IST-REx-ID: 2880 | OA
P. Marhavy et al., “Auxin reflux between the endodermis and pericycle promotes lateral root initiation,” EMBO Journal, vol. 32, no. 1, pp. 149–158, 2013.
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2013 | Journal Article | IST-REx-ID: 2882 | OA
C. Löfke, M. Zwiewka, I. Heilmann, M. Van Montagu, T. Teichmann, and J. Friml, “Asymmetric gibberellin signaling regulates vacuolar trafficking of PIN auxin transporters during root gravitropism,” PNAS, vol. 110, no. 9, pp. 3627–3632, 2013.
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2013 | Journal Article | IST-REx-ID: 2883 | OA
B. Wang et al., “Arabidopsis TWISTED DWARF1 functionally interacts with auxin exporter ABCB1 on the root plasma membrane,” Plant Cell, vol. 25, no. 1, pp. 202–214, 2013.
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2013 | Journal Article | IST-REx-ID: 2884
J.-L. Maître et al., “Cell adhesion mechanics of zebrafish gastrulation,” Medecine Sciences, vol. 29, no. 2, pp. 147–150, 2013.
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2013 | Conference (Editor) | IST-REx-ID: 2885
A. Kucera, T. A. Henzinger, J. Nesetril, T. Vojnar, and D. Antos, Eds., Mathematical and Engineering Methods in Computer Science, vol. 7721. Springer, 2013, pp. 1–228.
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2013 | Conference Paper | IST-REx-ID: 2886 | OA
M. Chmelik and V. Řehák, “Controllable-choice message sequence graphs,” vol. 7721. Springer, pp. 118–130, 2013.
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2013 | Journal Article | IST-REx-ID: 2887 | OA
S. Fang et al., “Genotypic recognition and spatial responses by rice roots,” PNAS, vol. 110, no. 7, pp. 2670–2675, 2013.
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2013 | Conference Paper | IST-REx-ID: 2901 | OA
C. Chen, V. Kolmogorov, Z. Yan, D. Metaxas, and C. Lampert, “Computing the M most probable modes of a graphical model,” presented at the AISTATS: Conference on Uncertainty in Artificial Intelligence, Scottsdale, AZ, United States, 2013, vol. 31, pp. 161–169.
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2013 | Conference Paper | IST-REx-ID: 2906 | OA
M. Kerber and H. Edelsbrunner, “3D kinetic alpha complexes and their implementation,” in 2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments, New Orleans, LA, United States, 2013, pp. 70–77.
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