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2682 Publications

2013 | Journal Article | IST-REx-ID: 2303
Hippenmeyer, S. (2013). Dissection of gene function at clonal level using mosaic analysis with double markers. Frontiers in Biology, 8(6), 557–568. https://doi.org/10.1007/s11515-013-1279-6
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2013 | Conference Paper | IST-REx-ID: 2276   OA
Gridchyn, I., & Kolmogorov, V. (2013). Potts model, parametric maxflow and k-submodular functions (pp. 2320–2327). Presented at the ICCV: International Conference on Computer Vision, Sydney, Australia: IEEE. https://doi.org/10.1109/ICCV.2013.288
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2013 | Journal Article | IST-REx-ID: 2466   OA
Ando, R., Thuerey, N., & Wojtan, C. J. (2013). Highly adaptive liquid simulations on tetrahedral meshes. ACM Transactions on Graphics, 32(4). https://doi.org/10.1145/2461912.2461982
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2013 | Journal Article | IST-REx-ID: 2473   OA
Barton, N. H., Etheridge, A., Kelleher, J., & Véber, A. (2013). Genetic hitch-hiking in spatially extended populations. Theoretical Population Biology, 87(8), 75–89. https://doi.org/10.1016/j.tpb.2012.12.001
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2013 | Conference Paper | IST-REx-ID: 2719
Paixao, T., & Barton, N. H. (2013). A variance decomposition approach to the analysis of genetic algorithms. In Proceedings of the 15th annual conference on Genetic and evolutionary computation (pp. 845–852). Amsterdam, Netherlands: ACM. https://doi.org/10.1145/2463372.2463470
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2013 | Journal Article | IST-REx-ID: 2808   OA
Landberg, K., Pederson, E., Viaene, T., Bozorg, B., Friml, J., Jönsson, H., … Sundberg, E. (2013). The moss physcomitrella patens reproductive organ development is highly organized, affected by the two SHI/STY genes and by the level of active auxin in the SHI/STY expression domain. Plant Physiology, 162(3), 1406–1419. https://doi.org/10.1104/pp.113.214023
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2013 | Journal Article | IST-REx-ID: 2822   OA
Topp, C., Iyer Pascuzzi, A., Anderson, J., Lee, C., Zurek, P., Symonova, O., … Benfey, P. (2013). 3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture. PNAS, 110(18), E1695–E1704. https://doi.org/10.1073/pnas.1304354110
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2013 | Journal Article | IST-REx-ID: 2827   OA
Du, Y., Tejos, R., Beck, M., Himschoot, E., Li, H., Robatzek, S., … Friml, J. (2013). Salicylic acid interferes with clathrin-mediated endocytic protein trafficking. PNAS, 110(19), 7946–7951. https://doi.org/10.1073/pnas.1220205110
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2013 | Journal Article | IST-REx-ID: 2834   OA
Avila, M., Mellibovsky, F., Roland, N., & Hof, B. (2013). Streamwise-localized solutions at the onset of turbulence in pipe flow. Physical Review Letters, 110(22). https://doi.org/10.1103/PhysRevLett.110.224502
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2013 | Journal Article | IST-REx-ID: 2841
Morita, H., & Heisenberg, C.-P. J. (2013). Holding on and letting go: Cadherin turnover in cell intercalation. Developmental Cell, 24(6), 567–569. https://doi.org/10.1016/j.devcel.2013.03.007
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2013 | Journal Article | IST-REx-ID: 2810   OA
De Vos, M., Poelwijk, F., Battich, N., Ndika, J., & Tans, S. (2013). Environmental dependence of genetic constraint. PLoS Genetics, 9(6). https://doi.org/10.1371/journal.pgen.1003580
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2013 | Journal Article | IST-REx-ID: 2860   OA
Dupret, D., O’Neill, J., & Csicsvari, J. L. (2013). Dynamic reconfiguration of hippocampal interneuron circuits during spatial learning. Neuron, 78(1), 166–180. https://doi.org/10.1016/j.neuron.2013.01.033
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2013 | Journal Article | IST-REx-ID: 2909   OA
Barton, N. H., Etheridge, A., & Véber, A. (2013). Modelling evolution in a spatial continuum. Journal of Statistical Mechanics Theory and Experiment, 2013(1). https://doi.org/10.1088/1742-5468/2013/01/P01002
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2013 | Journal Article | IST-REx-ID: 2853   OA
Refardt, D., Bergmiller, T., & Kümmerli, R. (2013). Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection. Proceedings of the Royal Society of London Series B Biological Sciences, 280(1759). https://doi.org/10.1098/rspb.2012.3035
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2013 | Journal Article | IST-REx-ID: 3116
Chatterjee, K., De Alfaro, L., Faella, M., Majumdar, R., & Raman, V. (2013). Code aware resource management. Formal Methods in System Design, 42(2), 142–174. https://doi.org/10.1007/s10703-012-0170-4
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2013 | Journal Article | IST-REx-ID: 2815
Edelsbrunner, H., Fasy, B. T., & Rote, G. (2013). Add isotropic Gaussian kernels at own risk: More and more resilient modes in higher dimensions. Discrete & Computational Geometry, 49(4), 797–822. https://doi.org/10.1007/s00454-013-9517-x
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2013 | Journal Article | IST-REx-ID: 476   OA
Dickerson, D., & Bilkey, D. (2013). Aberrant neural synchrony in the maternal immune activation model: Using translatable measures to explore targeted interventions. Frontiers in Behavioral Neuroscience, 7(DEC). https://doi.org/10.3389/fnbeh.2013.00217
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2013 | Journal Article | IST-REx-ID: 508   OA
Tarazona Santos, E., Machado, M., Magalhães, W., Chen, R., Lyon, F., Burdett, L., … Chanock, S. (2013). Evolutionary dynamics of the human NADPH oxidase genes CYBB, CYBA, NCF2, and NCF4: Functional implications. Molecular Biology and Evolution, 30(9), 2157–2167. https://doi.org/10.1093/molbev/mst119
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2013 | Journal Article | IST-REx-ID: 527
Wabnik, K. T., Robert, H., Smith, R., & Friml, J. (2013). Modeling framework for the establishment of the apical-basal embryonic axis in plants. Current Biology, 23(24), 2513–2518. https://doi.org/10.1016/j.cub.2013.10.038
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2013 | Journal Article | IST-REx-ID: 522
Fuertbauer, E., Zaujec, J., Uhrin, P., Raab, I., Weber, M., Schachner, H., … Stockinger, H. (2013). Thymic medullar conduits-associated podoplanin promotes natural regulatory T cells. Immunology Letters, 154(1–2), 31–41. https://doi.org/10.1016/j.imlet.2013.07.007
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2013 | Technical Report | IST-REx-ID: 5403   OA
Chatterjee, K., & Ibsen-Jensen, R. (2013). Qualitative analysis of concurrent mean-payoff games. IST Austria. https://doi.org/10.15479/AT:IST-2013-126-v1-1
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2013 | Conference Paper | IST-REx-ID: 2327
Henzinger, T. A., & Otop, J. (2013). From model checking to model measuring. Presented at the CONCUR: Concurrency Theory, Buenos Aires, Argentina: Springer. https://doi.org/10.1007/978-3-642-40184-8_20
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2013 | Conference Paper | IST-REx-ID: 1374   OA
Chatterjee, K., & Fijalkow, N. (2013). Infinite-state games with finitary conditions. In 22nd EACSL Annual Conference on Computer Science Logic (Vol. 23, pp. 181–196). Torino, Italy: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.CSL.2013.181
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2013 | Conference Paper | IST-REx-ID: 2000   OA
Reiter, J., Božić, I., Chatterjee, K., & Nowak, M. (2013). TTP: Tool for tumor progression. In Proceedings of 25th Int. Conf. on Computer Aided Verification (Vol. 8044, pp. 101–106). St. Petersburg, Russia: Springer. https://doi.org/10.1007/978-3-642-39799-8_6
View | Files available | DOI | Download (ext.) | arXiv
 
2013 | Journal Article | IST-REx-ID: 2858   OA
Reiter, J., Božić, I., Allen, B., Chatterjee, K., & Nowak, M. (2013). The effect of one additional driver mutation on tumor progression. Evolutionary Applications, 6(1), 34–45. https://doi.org/10.1111/eva.12020
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2013 | Journal Article | IST-REx-ID: 2884
Maître, J.-L., Berthoumieux, H., Krens, G., Salbreux, G., Julicher, F., Paluch, E., & Heisenberg, C.-P. J. (2013). Cell adhesion mechanics of zebrafish gastrulation. Medecine Sciences, 29(2), 147–150. https://doi.org/10.1051/medsci/2013292011
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2013 | Conference Paper | IST-REx-ID: 2295   OA
Chatterjee, K., Chmelik, M., & Tracol, M. (2013). What is decidable about partially observable Markov decision processes with omega-regular objectives. Presented at the CSL: Computer Science Logic, Torino, Italy: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.CSL.2013.165
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2013 | Conference Paper | IST-REx-ID: 2182
Cerny, P., Henzinger, T. A., & Radhakrishna, A. (2013). Quantitative abstraction refinement. In Proceedings of the 40th annual ACM SIGPLAN-SIGACT symposium on Principles of programming language (pp. 115–128). Rome, Italy: ACM. https://doi.org/10.1145/2429069.2429085
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2013 | Technical Report | IST-REx-ID: 5408
Chatterjee, K., Doyen, L., Nain, S., & Vardi, M. (2013). The complexity of partial-observation stochastic parity games with finite-memory strategies. IST Austria. https://doi.org/10.15479/AT:IST-2013-141-v1-1
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2013 | Technical Report | IST-REx-ID: 5410
Ahmed, U., Chatterjee, K., & Gulwani, S. (2013). Automatic generation of alternative starting positions for traditional board games. IST Austria. https://doi.org/10.15479/AT:IST-2013-146-v1-1
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2013 | Conference Paper | IST-REx-ID: 2517   OA
Almagor, S., Boker, U., & Kupferman, O. (2013). Formalizing and reasoning about quality. Presented at the ICALP: Automata, Languages and Programming, Riga, Latvia: Springer. https://doi.org/10.1007/978-3-642-39212-2_3
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2013 | Conference Paper | IST-REx-ID: 2447   OA
Piskac, R., Wies, T., & Zufferey, D. (2013). Automating separation logic using SMT. Presented at the CAV: Computer Aided Verification, St. Petersburg, Russia: Springer. https://doi.org/10.1007/978-3-642-39799-8_54
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2013 | Journal Article | IST-REx-ID: 2839   OA
Weber, M., Hauschild, R., Schwarz, J., Moussion, C., De Vries, I., Legler, D., … Sixt, M. K. (2013). Interstitial dendritic cell guidance by haptotactic chemokine gradients. Science, 339(6117), 328–332. https://doi.org/10.1126/science.1228456
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2012 | Conference Paper | IST-REx-ID: 2049   OA
Heyse, S., Kiltz, E., Lyubashevsky, V., Paar, C., & Pietrzak, K. Z. (2012). Lapin: An efficient authentication protocol based on ring-LPN. In Conference proceedings FSE 2012 (Vol. 7549, pp. 346–365). Washington, DC, USA: Springer. https://doi.org/10.1007/978-3-642-34047-5_20
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2012 | Journal Article | IST-REx-ID: 2912
Edelsbrunner, H., & Strelkova, N. (2012). Configuration space for shortest networks . Uspekhi Mat. Nauk, 67(6), 203–204. https://doi.org/10.4213/rm9503
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2012 | Journal Article | IST-REx-ID: 2943   OA
Hadizadeh Yazdi, N., Guet, C. C., Johnson, R., & Marko, J. (2012). Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions. Molecular Microbiology, 86(6), 1318–1333. https://doi.org/10.1111/mmi.12071
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2012 | Journal Article | IST-REx-ID: 2931
Torresani, L., Kolmogorov, V., & Rother, C. (2012). A dual decomposition approach to feature correspondence. IEEE Transactions on Pattern Analysis and Machine Intelligence, 35(2), 259–271. https://doi.org/10.1109/TPAMI.2012.105
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2012 | Journal Article | IST-REx-ID: 2917
Vladar, H. (2012). The game of active search for extra terrestrial intelligence Breaking the Great Silence . International Journal of Astrobiology, 12(1), 53–62. https://doi.org/10.1017/S1473550412000407
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2012 | Conference Paper | IST-REx-ID: 2974   OA
Jain, A., Krenn, S., Pietrzak, K. Z., & Tentes, A. (2012). Commitments and efficient zero knowledge proofs from learning parity with noise. In X. Wang & K. Sako (Eds.) (Vol. 7658, pp. 663–680). Presented at the ASIACRYPT: Theory and Application of Cryptology and Information Security, Beijing, China: Springer. https://doi.org/10.1007/978-3-642-34961-4_40
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2012 | Journal Article | IST-REx-ID: 2962   OA
Aeschbacher, S., Beaumont, M., & Futschik, A. (2012). A novel approach for choosing summary statistics in approximate Bayesian computation. Genetics, 192(3), 1027–1047. https://doi.org/10.1534/genetics.112.143164
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2012 | Conference Paper | IST-REx-ID: 3136
Guet, C. C., Gupta, A., Henzinger, T. A., Mateescu, M., & Sezgin, A. (2012). Delayed continuous time Markov chains for genetic regulatory circuits (Vol. 7358, pp. 294–309). Presented at the CAV: Computer Aided Verification, Berkeley, CA, USA: Springer. https://doi.org/10.1007/978-3-642-31424-7_24
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2012 | Conference Paper | IST-REx-ID: 3155   OA
Delahaye, B., Fahrenberg, U., Henzinger, T. A., Legay, A., & Nickovic, D. (2012). Synchronous interface theories and time triggered scheduling (Vol. 7273, pp. 203–218). Presented at the FORTE: Formal Techniques for Networked and Distributed Systems & FMOODS: Formal Methods for Open Object-Based Distributed Systems , Stockholm, Sweden: Springer. https://doi.org/10.1007/978-3-642-30793-5_13
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2012 | Conference Paper | IST-REx-ID: 3129   OA
Busaryev, O., Cabello, S., Chen, C., Dey, T., & Wang, Y. (2012). Annotating simplices with a homology basis and its applications (Vol. 7357, pp. 189–200). Presented at the SWAT: Symposium and Workshops on Algorithm Theory, Helsinki, Finland: Springer. https://doi.org/10.1007/978-3-642-31155-0_17
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2012 | Journal Article | IST-REx-ID: 3131   OA
Weissman, D., & Barton, N. H. (2012). Limits to the rate of adaptive substitution in sexual populations. PLoS Genetics, 8(6). https://doi.org/10.1371/journal.pgen.1002740
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2012 | Journal Article | IST-REx-ID: 3117   OA
Kolmogorov, V. (2012). Minimizing a sum of submodular functions. Discrete Applied Mathematics, 160(15), 2246–2258. https://doi.org/10.1016/j.dam.2012.05.025
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2012 | Journal Article | IST-REx-ID: 3167
Weber, M. (2012). NextGen speaks 13 . Science, 336(6077), 32–34. https://doi.org/10.1126/science.336.6077.32
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2012 | Journal Article | IST-REx-ID: 3256   OA
Edelsbrunner, H., & Kerber, M. (2012). Dual complexes of cubical subdivisions of ℝn. Discrete & Computational Geometry, 47(2), 393–414. https://doi.org/10.1007/s00454-011-9382-4
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2012 | Journal Article | IST-REx-ID: 3244
Danowski, P. (2012). Die Zeit des Abwartens ist vorbei! BuB – Forum Bibliothek und Information, 64(4), 284.
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2012 | Conference Paper | IST-REx-ID: 3282   OA
Dodis, Y., Pietrzak, K. Z., Kiltz, E., & Wichs, D. (2012). Message authentication, revisited (Vol. 7237, pp. 355–374). Presented at the EUROCRYPT: Theory and Applications of Cryptographic Techniques, Cambridge, UK: Springer. https://doi.org/10.1007/978-3-642-29011-4_22
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2012 | Conference Paper | IST-REx-ID: 3124
Korc, F., Kolmogorov, V., & Lampert, C. (2012). Approximating marginals using discrete energy minimization. Presented at the ICML: International Conference on Machine Learning, Edinburgh, Scotland: ICML.
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