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2938 Publications

2011 | Journal Article | IST-REx-ID: 3374 | OA
Tkačik, G., & Walczak, A. (2011). Information transmission in genetic regulatory networks a review. Journal of Physics: Condensed Matter. IOP Publishing Ltd. https://doi.org/10.1088/0953-8984/23/15/153102
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2011 | Journal Article | IST-REx-ID: 3375 | OA
de Vladar, H., & Barton, N. H. (2011). The statistical mechanics of a polygenic character under stabilizing selection mutation and drift. Journal of the Royal Society Interface. Royal Society of London. https://doi.org/10.1098/rsif.2010.0438
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2011 | Journal Article | IST-REx-ID: 3376 | OA
Bollenbach, M. T., & Kishony, R. (2011). Resolution of gene regulatory conflicts caused by combinations of antibiotics. Molecular Cell. Cell Press. https://doi.org/10.1016/j.molcel.2011.04.016
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2011 | Journal Article | IST-REx-ID: 3377 | OA
Edelsbrunner, H., Morozov, D., & Patel, A. (2011). Quantifying transversality by measuring the robustness of intersections. Foundations of Computational Mathematics. Springer. https://doi.org/10.1007/s10208-011-9090-8
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2011 | Journal Article | IST-REx-ID: 3378
Bendich, P., & Harer, J. (2011). Persistent intersection homology. Foundations of Computational Mathematics. Springer. https://doi.org/10.1007/s10208-010-9081-1
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2011 | Journal Article | IST-REx-ID: 3379 | OA
Row, R., Maître, J.-L., Martin, B., Stockinger, P., Heisenberg, C.-P. J., & Kimelman, D. (2011). Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail. Developmental Biology. Elsevier. https://doi.org/10.1016/j.ydbio.2011.03.025
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2011 | Journal Article | IST-REx-ID: 3380 | OA
Logeswaran, S., & Barton, N. H. (2011). Mapping Mendelian traits in asexual progeny using changes in marker allele frequency. Genetical Research. Cambridge University Press. https://doi.org/10.1017/S0016672311000115
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2011 | Journal Article | IST-REx-ID: 3771
Pavan, A., Martins, F., Santos, F., Ditchfield, A., & Fernandes Redondo, R. A. (2011). Patterns of diversification in two species of short-tailed bats (Carollia Gray, 1838): the effects of historical fragmentation of Brazilian rainforests. Biological Journal of the Linnean Society. Wiley-Blackwell. https://doi.org/10.1111/j.1095-8312.2010.01601.x
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2011 | Journal Article | IST-REx-ID: 3778 | OA
Barton, N. H. (2011). Estimating linkage disequilibria. Heredity. Nature Publishing Group. https://doi.org/10.1038/hdy.2010.67
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2011 | Journal Article | IST-REx-ID: 3781
Fasy, B. T. (2011). The difference in length of curves in R^n. Acta Sci. Math. (Szeged). Szegedi Tudományegyetem.
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2011 | Journal Article | IST-REx-ID: 3784 | OA
Palero, F., Guerao, G., Clark, P., & Abello, P. (2011). Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description. Journal of the Marine Biological Association of the United Kingdom. Cambridge University Press. https://doi.org/10.1017/S0025315410000287
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2011 | Book Chapter | IST-REx-ID: 3791
Krens, G., & Heisenberg, C.-P. J. (2011). Cell sorting in development. In M. Labouesse (Ed.), Forces and Tension in Development (Vol. 95, pp. 189–213). Elsevier. https://doi.org/10.1016/B978-0-12-385065-2.00006-2
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2011 | Book Chapter | IST-REx-ID: 3796 | OA
Edelsbrunner, H., & Kerber, M. (2011). Covering and packing with spheres by diagonal distortion in R^n. In C. Calude, G. Rozenberg, & A. Salomaa (Eds.), Rainbow of Computer Science (Vol. 6570, pp. 20–35). Springer. https://doi.org/10.1007/978-3-642-19391-0_2
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2011 | Journal Article | IST-REx-ID: 3381 | OA
Henzinger, T. A., Jobstmann, B., & Wolf, V. (2011). Formalisms for specifying Markovian population models. IJFCS: International Journal of Foundations of Computer Science. World Scientific Publishing. https://doi.org/10.1142/S0129054111008441
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2011 | Journal Article | IST-REx-ID: 3315 | OA
Chatterjee, K., Henzinger, T. A., & Prabhu, V. (2011). Timed parity games: Complexity and robustness. Logical Methods in Computer Science. International Federation of Computational Logic. https://doi.org/10.2168/LMCS-7(4:8)2011
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2011 | Journal Article | IST-REx-ID: 3965
Wang, B., Edelsbrunner, H., & Morozov, D. (2011). Computing elevation maxima by searching the Gauss sphere. Journal of Experimental Algorithmics. ACM. https://doi.org/10.1145/1963190.1970375
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2011 | Journal Article | IST-REx-ID: 3364 | OA
Didier, F., Henzinger, T. A., Mateescu, M., & Wolf, V. (2011). Approximation of event probabilities in noisy cellular processes. Theoretical Computer Science. Elsevier. https://doi.org/10.1016/j.tcs.2010.10.022
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2011 | Journal Article | IST-REx-ID: 490 | OA
Schlögl, A., Vidaurre, C., & Sander, T. (2011). BioSig: The free and open source software library for biomedical signal processing. Computational Intelligence and Neuroscience. Hindawi Publishing Corporation. https://doi.org/10.1155/2011/935364
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2011 | Journal Article | IST-REx-ID: 491
Eichner, A., & Sixt, M. K. (2011). Setting the clock for recirculating lymphocytes. Science Signaling. American Association for the Advancement of Science. https://doi.org/10.1126/scisignal.2002617
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2011 | Journal Article | IST-REx-ID: 469 | OA
Vyleta, N., & Smith, S. (2011). Spontaneous glutamate release is independent of calcium influx and tonically activated by the calcium-sensing receptor. European Journal of Neuroscience. Wiley-Blackwell. https://doi.org/10.1523/JNEUROSCI.6398-10.2011
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2011 | Journal Article | IST-REx-ID: 518 | OA
Schraivogel, D., Weinmann, L., Beier, D., Tabatabai, G., Eichner, A., Zhu, J., … Meister, G. (2011). CAMTA1 is a novel tumour suppressor regulated by miR-9/9 * in glioblastoma stem cells. EMBO Journal. Wiley-Blackwell. https://doi.org/10.1038/emboj.2011.301
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2011 | Journal Article | IST-REx-ID: 531 | OA
Guerraoui, R., Henzinger, T. A., & Singh, V. (2011). Verification of STM on relaxed memory models. Formal Methods in System Design. Springer. https://doi.org/10.1007/s10703-011-0131-3
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2011 | Technical Report | IST-REx-ID: 5379 | OA
Chatterjee, K., & Henzinger, M. (2011). An O(n2) time algorithm for alternating Büchi games. IST Austria. https://doi.org/10.15479/AT:IST-2011-0009
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2011 | Preprint | IST-REx-ID: 3338 | OA
Chatterjee, K. (2011). Bounded rationality in concurrent parity games. arXiv. ArXiv.
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2011 | Technical Report | IST-REx-ID: 5383 | OA
Wies, T., Muñiz, M., & Kuncak, V. (2011). On an efficient decision procedure for imperative tree data structures. IST Austria. https://doi.org/10.15479/AT:IST-2011-0005
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2011 | Conference Paper | IST-REx-ID: 3323
Wies, T., Muñiz, M., & Kuncak, V. (2011). An efficient decision procedure for imperative tree data structures (Vol. 6803, pp. 476–491). Presented at the CADE 23: Automated Deduction , Wrocław, Poland: Springer. https://doi.org/10.1007/978-3-642-22438-6_36
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2011 | Technical Report | IST-REx-ID: 5381 | OA
Chatterjee, K., & Doyen, L. (2011). Partial-observation stochastic games: How to win when belief fails. IST Austria. https://doi.org/10.15479/AT:IST-2011-0007
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2011 | Technical Report | IST-REx-ID: 5380 | OA
Chatterjee, K. (2011). Bounded rationality in concurrent parity games. IST Austria. https://doi.org/10.15479/AT:IST-2011-0008
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2011 | Technical Report | IST-REx-ID: 5382 | OA
Chatterjee, K. (2011). Robustness of structurally equivalent concurrent parity games. IST Austria. https://doi.org/10.15479/AT:IST-2011-0006
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2011 | Technical Report | IST-REx-ID: 5387 | OA
Chatterjee, K., & Doyen, L. (2011). Energy and mean-payoff parity Markov decision processes. IST Austria. https://doi.org/10.15479/AT:IST-2011-0001
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2011 | Conference Paper | IST-REx-ID: 3356 | OA
Boker, U., Chatterjee, K., Henzinger, T. A., & Kupferman, O. (2011). Temporal specifications with accumulative values. Presented at the LICS: Logic in Computer Science, Toronto, Canada: IEEE. https://doi.org/10.1109/LICS.2011.33
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2011 | Conference Paper | IST-REx-ID: 3345 | OA
Chatterjee, K., & Doyen, L. (2011). Energy and mean-payoff parity Markov Decision Processes (Vol. 6907, pp. 206–218). Presented at the MFCS: Mathematical Foundations of Computer Science, Warsaw, Poland: Springer. https://doi.org/10.1007/978-3-642-22993-0_21
View | Files available | DOI | Download Preprint (ext.) | arXiv
 
2011 | Conference Paper | IST-REx-ID: 3336
Chen, C., Freedman, D., & Lampert, C. (2011). Enforcing topological constraints in random field image segmentation. In CVPR: Computer Vision and Pattern Recognition (pp. 2089–2096). Colorado Springs, CO, USA: IEEE. https://doi.org/10.1109/CVPR.2011.5995503
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2011 | Technical Report | IST-REx-ID: 5385 | OA
Boker, U., Chatterjee, K., Henzinger, T. A., & Kupferman, O. (2011). Temporal specifications with accumulative values. IST Austria. https://doi.org/10.15479/AT:IST-2011-0003
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2011 | Technical Report | IST-REx-ID: 5384 | OA
Chatterjee, K., & Tracol, M. (2011). Decidable problems for probabilistic automata on infinite words. IST Austria. https://doi.org/10.15479/AT:IST-2011-0004
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2011 | Technical Report | IST-REx-ID: 5386 | OA
Chen, C., Freedman, D., & Lampert, C. (2011). Enforcing topological constraints in random field image segmentation. IST Austria. https://doi.org/10.15479/AT:IST-2011-0002
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2011 | Conference Paper | IST-REx-ID: 3366 | OA
Cerny, P., Chatterjee, K., Henzinger, T. A., Radhakrishna, A., & Singh, R. (2011). Quantitative synthesis for concurrent programs. In G. Gopalakrishnan & S. Qadeer (Eds.) (Vol. 6806, pp. 243–259). Presented at the CAV: Computer Aided Verification, Snowbird, USA: Springer. https://doi.org/10.1007/978-3-642-22110-1_20
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2011 | Journal Article | IST-REx-ID: 6496 | OA
Park, H., Oikonomou, P., Guet, C. C., & Cluzel, P. (2011). Noise underlies switching behavior of the bacterial flagellum. Biophysical Journal. Elsevier BV. https://doi.org/10.1016/j.bpj.2011.09.040
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2010 | Journal Article | IST-REx-ID: 2409 | OA
Kupczok, A., Schmidt, H., & Von Haeseler, A. (2010). Accuracy of phylogeny reconstruction methods combining overlapping gene data sets . Algorithms for Molecular Biology. BioMed Central. https://doi.org/10.1186/1748-7188-5-37
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2010 | Journal Article | IST-REx-ID: 3303 | OA
Weissman, D., Feldman, M., & Fisher, D. (2010). The rate of fitness-valley crossing in sexual populations. Genetics. Genetics Society of America. https://doi.org/10.1534/genetics.110.123240
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2010 | Journal Article | IST-REx-ID: 3867 | OA
Chatterjee, K., Doyen, L., & Henzinger, T. A. (2010). Expressiveness and closure properties for quantitative languages. Logical Methods in Computer Science. International Federation of Computational Logic. https://doi.org/10.2168/LMCS-6(3:10)2010
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2010 | Conference Paper | IST-REx-ID: 3719 | OA
Feret, J., Henzinger, T. A., Koeppl, H., & Petrov, T. (2010). Lumpability abstractions of rule-based systems (Vol. 40, pp. 142–161). Presented at the MECBIC: Membrane Computing and Biologically Inspired Process Calculi, Jena, Germany: Open Publishing Association.
View | Files available | arXiv
 
2010 | Journal Article | IST-REx-ID: 3772 | OA
Barton, N. H. (2010). Understanding adaptation in large populations. PLoS Genetics. Public Library of Science. https://doi.org/10.1371/journal.pgen.1000987
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2010 | Journal Article | IST-REx-ID: 3773 | OA
Barton, N. H. (2010). What role does natural selection play in speciation? Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. Royal Society. https://doi.org/10.1098/rstb.2010.0001
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2010 | Journal Article | IST-REx-ID: 3774
Senn, H., Swanson, G., Goodman, S., Barton, N. H., & Pemberton, J. (2010). Phenotypic correlates of hybridisation between red and sika deer (genus Cervus). Journal of Animal Ecology. Wiley-Blackwell. https://doi.org/10.1111/j.1365-2656.2009.01633.x
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2010 | Journal Article | IST-REx-ID: 3776 | OA
Barton, N. H. (2010). Genetic linkage and natural selection. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. Royal Society. https://doi.org/10.1098/rstb.2010.0106
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2010 | Journal Article | IST-REx-ID: 3777 | OA
Barton, N. H. (2010). Mutation and the evolution of recombination. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. Royal Society. https://doi.org/10.1098/rstb.2009.0320
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2010 | Journal Article | IST-REx-ID: 3779 | OA
Rosas, U., Barton, N. H., Copsey, L., Barbier De Reuille, P., & Coen, E. (2010). Cryptic variation between species and the basis of hybrid performance. PLoS Biology. Public Library of Science. https://doi.org/10.1371/journal.pbio.1000429
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2010 | Conference Paper | IST-REx-ID: 3782
Chen, C., & Freedman, D. (2010). Topology noise removal for curve  and surface evolution. In Conference proceedings MCV 2010 (Vol. 6533, pp. 31–42). Beijing, China: Springer. https://doi.org/10.1007/978-3-642-18421-5_4
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2010 | Journal Article | IST-REx-ID: 3783
Palero, F., González Candelas, F., & Pascual, M. (2010). Microsatelight – Pipeline to expedite microsatellite analysis. Journal of Heredity. Oxford University Press. https://doi.org/10.1093/jhered/esq111
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