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3033 Publications
2012 | Journal Article | IST-REx-ID: 3121 |

Williams C, Chen W, Lee C, Yaeger D, Vyleta N, Smith S. 2012. Coactivation of multiple tightly coupled calcium channels triggers spontaneous release of GABA. Nature Neuroscience. 15(9), 1195–1197.
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| PubMed | Europe PMC
2012 | Conference Paper | IST-REx-ID: 3123 |

Yu J, Wojtan CJ, Turk G, Yap C. 2012. Explicit mesh surfaces for particle based fluids. Computer Graphics Forum. EUROGRAPHICS: Conference on European Association for Computer Graphics, Eurographics, vol. 31, 815–824.
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2012 | Conference Paper | IST-REx-ID: 3124 |

Korc F, Kolmogorov V, Lampert C. 2012. Approximating marginals using discrete energy minimization. ICML: International Conference on Machine Learning, Inferning 2012, .
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2012 | Conference Paper | IST-REx-ID: 3125 |

Sharmanska V, Quadrianto N, Lampert C. 2012. Augmented attribute representations. ECCV: European Conference on Computer Vision, LNCS, vol. 7576, 242–255.
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2012 | Conference Paper | IST-REx-ID: 3127 |

Quadrianto N, Lampert C, Chen C. 2012. The most persistent soft-clique in a set of sampled graphs. Proceedings of the 29th International Conference on Machine Learning. ICML: International Conference on Machine Learning, 211–218.
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2012 | Journal Article | IST-REx-ID: 3128 |

Chatterjee K, Doyen L, Henzinger TA. 2012. A survey of partial-observation stochastic parity games. Formal Methods in System Design. 43(2), 268–284.
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2012 | Conference Paper | IST-REx-ID: 3129 |

Busaryev O, Cabello S, Chen C, Dey T, Wang Y. 2012. Annotating simplices with a homology basis and its applications. SWAT: Symposium and Workshops on Algorithm Theory, LNCS, vol. 7357, 189–200.
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| arXiv
2012 | Journal Article | IST-REx-ID: 3130 |

Bergmiller T, Ackermann M, Silander O. 2012. Patterns of evolutionary conservation of essential genes correlate with their compensability. PLoS Genetics. 8(6), e1002803.
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2012 | Journal Article | IST-REx-ID: 3131 |

Weissman D, Barton NH. 2012. Limits to the rate of adaptive substitution in sexual populations. PLoS Genetics. 8(6), e1002740.
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2012 | Conference Paper | IST-REx-ID: 3133 |

Edelsbrunner H, Kerber M. 2012. Alexander duality for functions: The persistent behavior of land and water and shore. Proceedings of the twenty-eighth annual symposium on Computational geometry . SCG: Symposium on Computational Geometry, 249–258.
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2012 | Conference Paper | IST-REx-ID: 3134
Edelsbrunner H, Fasy B, Rote G. 2012. Add isotropic Gaussian kernels at own risk: More and more resilient modes in higher dimensions. Proceedings of the twenty-eighth annual symposium on Computational geometry . SCG: Symposium on Computational Geometry, 91–100.
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2012 | Conference Paper | IST-REx-ID: 3135 |

Brázdil B, Chatterjee K, Kučera A, Novotný P. 2012. Efficient controller synthesis for consumption games with multiple resource types. CAV: Computer Aided Verification, LNCS, vol. 7358, 23–38.
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2012 | Conference Paper | IST-REx-ID: 3155 |

Delahaye B, Fahrenberg U, Henzinger TA, Legay A, Nickovic D. 2012. Synchronous interface theories and time triggered scheduling. FORTE: Formal Techniques for Networked and Distributed Systems & FMOODS: Formal Methods for Open Object-Based Distributed Systems , LNCS, vol. 7273, 203–218.
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2012 | Journal Article | IST-REx-ID: 3157 |

Diaz Jr L, Williams R, Wu J, Kinde I, Hecht J, Berlin J, Allen B, Božić I, Reiter J, Nowak M, Kinzler K, Oliner K, Vogelstein B. 2012. The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers. Nature. 486(7404), 537–540.
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| PubMed | Europe PMC
2012 | Journal Article | IST-REx-ID: 3158 |

Schachtner H, Li A, Stevenson D, Calaminus S, Thomas S, Watson S, Sixt MK, Wedlich Söldner R, Strathdee D, Machesky L. 2012. Tissue inducible Lifeact expression allows visualization of actin dynamics in vivo and ex vivo. European Journal of Cell Biology. 91(11–12), 923–929.
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2012 | Journal Article | IST-REx-ID: 3159 |

Mileyko Y, Edelsbrunner H, Price C, Weitz J. 2012. Hierarchical ordering of reticular networks. PLoS One. 7(6), e36715.
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2012 | Journal Article | IST-REx-ID: 3161 |

Vyleta M, Wong J, Magun B. 2012. Suppression of ribosomal function triggers innate immune signaling through activation of the NLRP3 inflammasome. PLoS One. 7(5), e36044.
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2012 | Conference Paper | IST-REx-ID: 3162 |

Asarin E, Donzé A, Maler O, Nickovic D. 2012. Parametric identification of temporal properties. RV: Runtime Verification, LNCS, vol. 7186, 147–160.
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2012 | Conference Paper | IST-REx-ID: 3165
Chatterjee K, Henzinger M. 2012. An O(n2) time algorithm for alternating Büchi games. Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms. SODA: Symposium on Discrete Algorithms, 1386–1399.
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2012 | Journal Article | IST-REx-ID: 3166 |

de Vladar H. 2012. Amino acid fermentation at the origin of the genetic code. Biology Direct. 7, 6.
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2012 | Journal Article | IST-REx-ID: 3167
Weber M. 2012. NextGen speaks 13 . Science. 336(6077), 32–34.
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| PubMed | Europe PMC
2012 | Journal Article | IST-REx-ID: 3168
Feret J, Henzinger TA, Koeppl H, Petrov T. 2012. Lumpability abstractions of rule based systems. Theoretical Computer Science. 431, 137–164.
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2012 | Journal Article | IST-REx-ID: 3242 |

Konrad M, Vyleta M, Theis F, Stock M, Tragust S, Klatt M, Drescher V, Marr C, Ugelvig LV, Cremer S. 2012. Social transfer of pathogenic fungus promotes active immunisation in ant colonies. PLoS Biology. 10(4), e1001300.
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2012 | Journal Article | IST-REx-ID: 3243
Danowski P. 2012. Zwischen Technologie und Information. Büchereiperspektiven. 1/2012, 11.
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2012 | Journal Article | IST-REx-ID: 3244
Danowski P. 2012. Die Zeit des Abwartens ist vorbei! BuB – Forum Bibliothek und Information. 64(4), 284.
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2012 | Journal Article | IST-REx-ID: 3246
Barone V, Heisenberg C-PJ. 2012. Cell adhesion in embryo morphogenesis. Current Opinion in Cell Biology. 24(1), 148–153.
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2012 | Journal Article | IST-REx-ID: 3248 |

Lampert C, Peters J. 2012. Real-time detection of colored objects in multiple camera streams with off-the-shelf hardware components. Journal of Real-Time Image Processing. 7(1), 31–41.
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2012 | Journal Article | IST-REx-ID: 3249
Cerny P, Henzinger TA, Radhakrishna A. 2012. Simulation distances. Theoretical Computer Science. 413(1), 21–35.
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2012 | Conference Paper | IST-REx-ID: 3252 |

Chatterjee K, Raman V. 2012. Synthesizing protocols for digital contract signing. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS, vol. 7148, 152–168.
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2012 | Journal Article | IST-REx-ID: 3254
Chatterjee K. 2012. The complexity of stochastic Müller games. Information and Computation. 211, 29–48.
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2012 | Conference Paper | IST-REx-ID: 3255 |

Chatterjee K, Doyen L. 2012. Games and Markov decision processes with mean payoff parity and energy parity objectives. MEMICS: Mathematical and Engineering Methods in Computer Science, LNCS, vol. 7119, 37–46.
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2012 | Journal Article | IST-REx-ID: 3256 |

Edelsbrunner H, Kerber M. 2012. Dual complexes of cubical subdivisions of ℝn. Discrete & Computational Geometry. 47(2), 393–414.
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2012 | Journal Article | IST-REx-ID: 3257 |

Kolmogorov V. 2012. Generalized roof duality and bisubmodular functions. Discrete Applied Mathematics. 160(4–5), 416–426.
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| arXiv
2012 | Journal Article | IST-REx-ID: 3258 |

Kim S, Guzmán J, Hu H, Jonas PM. 2012. Active dendrites support efficient initiation of dendritic spikes in hippocampal CA3 pyramidal neurons. Nature Neuroscience. 15(4), 600–606.
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| PubMed | Europe PMC
2012 | Journal Article | IST-REx-ID: 3260 |

Chatterjee K, Reiter J, Nowak M. 2012. Evolutionary dynamics of biological auctions. Theoretical Population Biology. 81(1), 69–80.
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2012 | Journal Article | IST-REx-ID: 3262 |

Tkačik G, Walczak A, Bialek W. 2012. Optimizing information flow in small genetic networks. III. A self-interacting gene. Physical Review E statistical nonlinear and soft matter physics . 85(4), 041903.
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2012 | Book Chapter | IST-REx-ID: 3277
de Vladar H, Chela Flores J. 2012.Can the evolution of multicellularity be anticipated in the exploration of the solar system? In: Life on Earth and other planetary bodies. Cellular Origin, Life in Extreme Habitats and Astrobiology, vol. 24, 387–405.
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2012 | Conference Paper | IST-REx-ID: 3279
Jain A, Pietrzak KZ, Tentes A. 2012. Hardness preserving constructions of pseudorandom functions. TCC: Theory of Cryptography Conference, LNCS, vol. 7194, 369–382.
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2012 | Conference Paper | IST-REx-ID: 3280 |

Pietrzak KZ. 2012. Subspace LWE. TCC: Theory of Cryptography Conference, LNCS, vol. 7194, 548–563.
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2012 | Conference Paper | IST-REx-ID: 3281
Pietrzak KZ, Rosen A, Segev G. 2012. Lossy functions do not amplify well. TCC: Theory of Cryptography Conference, LNCS, vol. 7194, 458–475.
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2012 | Conference Paper | IST-REx-ID: 3282 |

Dodis Y, Pietrzak KZ, Kiltz E, Wichs D. 2012. Message authentication, revisited. EUROCRYPT: Theory and Applications of Cryptographic Techniques, LNCS, vol. 7237, 355–374.
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2012 | Journal Article | IST-REx-ID: 3289 |

Pereira A, Leite F, Brasil B, Soares Martins J, Torres A, Pimenta P, Souto Padrón T, Tranktman P, Ferreira P, Kroon E, Bonjardim C. 2012. A vaccinia virus-driven interplay between the MKK4/7-JNK1/2 pathway and cytoskeleton reorganization. Journal of Virology. 86(1), 172–184.
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| PubMed | Europe PMC
2012 | Journal Article | IST-REx-ID: 3310 |

Bendich P, Cabello S, Edelsbrunner H. 2012. A point calculus for interlevel set homology. Pattern Recognition Letters. 33(11), 1436–1444.
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2012 | Journal Article | IST-REx-ID: 3317 |

Eggermann E, Bucurenciu I, Goswami S, Jonas PM. 2012. Nanodomain coupling between Ca(2+) channels and sensors of exocytosis at fast mammalian synapses. Nature Reviews Neuroscience. 13(1), 7–21.
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2012 | Journal Article | IST-REx-ID: 3331 |

Kerber M, Sagraloff M. 2012. A worst case bound for topology computation of algebraic curves. Journal of Symbolic Computation. 47(3), 239–258.
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2012 | Conference Paper | IST-REx-ID: 3341 |

Chatterjee K. 2012. Robustness of structurally equivalent concurrent parity games. FoSSaCS: Foundations of Software Science and Computation Structures, LNCS, vol. 7213, 270–285.
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| arXiv
2012 | Conference Paper | IST-REx-ID: 3251 |

Zufferey D, Wies T, Henzinger TA. 2012. Ideal abstractions for well structured transition systems. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS, vol. 7148, 445–460.
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2011 | Journal Article | IST-REx-ID: 469 |

Vyleta N, Smith S. 2011. Spontaneous glutamate release is independent of calcium influx and tonically activated by the calcium-sensing receptor. European Journal of Neuroscience. 31(12), 4593–4606.
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2011 | Journal Article | IST-REx-ID: 490 |

Schlögl A, Vidaurre C, Sander T. 2011. BioSig: The free and open source software library for biomedical signal processing. Computational Intelligence and Neuroscience. 2011, 935364.
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2011 | Journal Article | IST-REx-ID: 518 |

Schraivogel D, Weinmann L, Beier D, Tabatabai G, Eichner A, Zhu J, Anton M, Sixt MK, Weller M, Beier C, Meister G. 2011. CAMTA1 is a novel tumour suppressor regulated by miR-9/9 * in glioblastoma stem cells. EMBO Journal. 30(20), 4309–4322.
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| PubMed | Europe PMC
2011 | Journal Article | IST-REx-ID: 531 |

Guerraoui R, Henzinger TA, Singh V. 2011. Verification of STM on relaxed memory models. Formal Methods in System Design. 39(3), 297–331.
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2011 | Technical Report | IST-REx-ID: 5379 |

Chatterjee K, Henzinger M. 2011. An O(n2) time algorithm for alternating Büchi games, IST Austria, 20p.
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2011 | Technical Report | IST-REx-ID: 5380 |

Chatterjee K. 2011. Bounded rationality in concurrent parity games, IST Austria, 53p.
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| DOI
2011 | Technical Report | IST-REx-ID: 5381 |

Chatterjee K, Doyen L. 2011. Partial-observation stochastic games: How to win when belief fails, IST Austria, 43p.
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2011 | Technical Report | IST-REx-ID: 5382 |

Chatterjee K. 2011. Robustness of structurally equivalent concurrent parity games, IST Austria, 18p.
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2011 | Technical Report | IST-REx-ID: 5383 |

Wies T, Muñiz M, Kuncak V. 2011. On an efficient decision procedure for imperative tree data structures, IST Austria, 25p.
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2011 | Technical Report | IST-REx-ID: 5384 |

Chatterjee K, Tracol M. 2011. Decidable problems for probabilistic automata on infinite words, IST Austria, 30p.
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| DOI
2011 | Technical Report | IST-REx-ID: 5385 |

Boker U, Chatterjee K, Henzinger TA, Kupferman O. 2011. Temporal specifications with accumulative values, IST Austria, 14p.
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| DOI
2011 | Technical Report | IST-REx-ID: 5386 |

Chen C, Freedman D, Lampert C. 2011. Enforcing topological constraints in random field image segmentation, IST Austria, 69p.
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| DOI
2011 | Technical Report | IST-REx-ID: 5387 |

Chatterjee K, Doyen L. 2011. Energy and mean-payoff parity Markov decision processes, IST Austria, 20p.
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| DOI
2011 | Journal Article | IST-REx-ID: 6496 |

Park H, Oikonomou P, Guet CC, Cluzel P. 2011. Noise underlies switching behavior of the bacterial flagellum. Biophysical Journal. 101(10), 2336–2340.
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| PubMed | Europe PMC
2011 | Journal Article | IST-REx-ID: 3771
Pavan A, Martins F, Santos F, Ditchfield A, Fernandes Redondo RA. 2011. Patterns of diversification in two species of short-tailed bats (Carollia Gray, 1838): the effects of historical fragmentation of Brazilian rainforests. Biological Journal of the Linnean Society. 102(3), 527–539.
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2011 | Journal Article | IST-REx-ID: 3778 |

Barton NH. 2011. Estimating linkage disequilibria. Heredity. 106(2), 205–206.
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| PubMed | Europe PMC
2011 | Journal Article | IST-REx-ID: 3781
Fasy BT. 2011. The difference in length of curves in R^n. Acta Sci. Math. (Szeged). 77(1–2), 359–367.
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2011 | Journal Article | IST-REx-ID: 3784 |

Palero F, Guerao G, Clark P, Abello P. 2011. Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description. Journal of the Marine Biological Association of the United Kingdom. 91(2), 485–492.
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2011 | Book Chapter | IST-REx-ID: 3796 |

Edelsbrunner H, Kerber M. 2011.Covering and packing with spheres by diagonal distortion in R^n. In: Rainbow of Computer Science. LNCS, vol. 6570, 20–35.
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2011 | Conference Paper | IST-REx-ID: 3163
Lampert C. 2011. Maximum margin multi-label structured prediction. NIPS: Neural Information Processing Systems.
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2011 | Conference Paper | IST-REx-ID: 3266
Ion A, Carreira J, Sminchisescu C. 2011. Probabilistic joint image segmentation and labeling. NIPS Proceedings. NIPS: Neural Information Processing Systems vol. 24, 1827–1835.
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2011 | Journal Article | IST-REx-ID: 3269 |

Sheng Y, Cutler B, Chen C, Nasman J. 2011. Perceptual global illumination cancellation in complex projection environments. Computer Graphics Forum. 30(4), 1261–1268.
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2011 | Conference Paper | IST-REx-ID: 3270
Chen C, Kerber M. 2011. Persistent homology computation with a twist. EuroCG: European Workshop on Computational Geometry, 197–200.
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2011 | Thesis | IST-REx-ID: 3273
Maître J-L. 2011. Mechanics of adhesion and de‐adhesion in zebrafish germ layer progenitors. IST Austria.
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2011 | Journal Article | IST-REx-ID: 3288 |

Smutny M, Wu S, Gomez G, Mangold S, Yap A, Hamilton N. 2011. Multicomponent analysis of junctional movements regulated by Myosin II isoforms at the epithelial zonula adherens. PLoS One. 6(7).
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| DOI
2011 | Journal Article | IST-REx-ID: 3290 |

Lohse K, Harrison R, Barton NH. 2011. A general method for calculating likelihoods under the coalescent process. Genetics. 189(3), 977–987.
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2011 | Conference Paper | IST-REx-ID: 3297 |

Wojtan CJ, Müller Fischer M, Brochu T. 2011. Liquid simulation with mesh-based surface tracking. SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, 8.
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2011 | Conference Paper | IST-REx-ID: 3298 |

Raveendran K, Wojtan CJ, Turk G. 2011. Hybrid smoothed particle hydrodynamics. SCA: ACM SIGGRAPH/Eurographics Symposium on Computer animation, 33–42.
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2011 | Conference Paper | IST-REx-ID: 3299 |

Henzinger TA, Mateescu M. 2011. Propagation models for computing biochemical reaction networks. CMSB: Computational Methods in Systems Biology, 1–3.
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2011 | Conference Paper | IST-REx-ID: 3301 |

Henzinger TA, Mateescu M. 2011. Tail approximation for the chemical master equation. WCSB: Workshop on Computational Systems Biology (TICSP).
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2011 | Conference Paper | IST-REx-ID: 3302 |

Henzinger TA, Singh A, Singh V, Wies T, Zufferey D. 2011. Static scheduling in clouds. HotCloud: Workshop on Hot Topics in Cloud Computing, 1–6.
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2011 | Book Chapter | IST-REx-ID: 3311
Edelsbrunner H. 2011.Alpha shapes - a survey. In: Tessellations in the Sciences. .
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