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2568 Publications

2012 | Conference Paper | IST-REx-ID: 3134
Edelsbrunner H, Fasy B, Rote G. 2012. Add isotropic Gaussian kernels at own risk: More and more resilient modes in higher dimensions. Proceedings of the twenty-eighth annual symposium on Computational geometry . SCG: Symposium on Computational Geometry 91–100.
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2012 | Journal Article | IST-REx-ID: 3242   OA
Konrad M, Vyleta M, Theis F, Stock M, Tragust S, Klatt M, Drescher V, Marr C, Ugelvig LV, Cremer S. 2012. Social transfer of pathogenic fungus promotes active immunisation in ant colonies. PLoS Biology. 10(4), e1001300.
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2012 | Journal Article | IST-REx-ID: 3158   OA
Schachtner H, Li A, Stevenson D, Calaminus S, Thomas S, Watson S, Sixt MK, Wedlich Söldner R, Strathdee D, Machesky L. 2012. Tissue inducible Lifeact expression allows visualization of actin dynamics in vivo and ex vivo. European Journal of Cell Biology. 91(11–12), 923–929.
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2012 | Journal Article | IST-REx-ID: 3160
Pantazis P, Bollenbach T. 2012. Transcription factor kinetics and the emerging asymmetry in the early mammalian embryo. Cell Cycle. 11(11), 2055–2058.
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2012 | Conference Paper | IST-REx-ID: 3280   OA
Pietrzak KZ. 2012. Subspace LWE. TCC: Theory of Cryptography Conference, LNCS, vol. 7194. 548–563.
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2012 | Journal Article | IST-REx-ID: 3317   OA
Eggermann E, Bucurenciu I, Goswami S, Jonas PM. 2012. Nanodomain coupling between Ca(2+) channels and sensors of exocytosis at fast mammalian synapses. Nature Reviews Neuroscience. 13(1), 7–21.
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2012 | Journal Article | IST-REx-ID: 3247
Vilaça S, Fernandes Redondo RA, Lins L, Santos F. 2012. Remaining genetic diversity in Brazilian Merganser (Mergus octosetaceus). Conservation Genetics. 13(1), 293–298.
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2012 | Journal Article | IST-REx-ID: 3331   OA
Kerber M, Sagraloff M. 2012. A worst case bound for topology computation of algebraic curves. Journal of Symbolic Computation. 47(3), 239–258.
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2012 | Journal Article | IST-REx-ID: 3115
Berberich E, Halperin D, Kerber M, Pogalnikova R. 2012. Deconstructing approximate offsets. Discrete & Computational Geometry. 48(4), 964–989.
View | Files available | DOI | Download (ext.) | arXiv
 
2012 | Journal Article | IST-REx-ID: 3836
Ghosal A, Iercan D, Kirsch C, Henzinger TA, Sangiovanni Vincentelli A. 2012. Separate compilation of hierarchical real-time programs into linear-bounded embedded machine code. Science of Computer Programming. 77(2), 96–112.
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2012 | Journal Article | IST-REx-ID: 494
Boker U, Kupferman O. 2012. Translating to Co-Büchi made tight, unified, and useful. ACM Transactions on Computational Logic (TOCL). 13(4), 29.
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2012 | Conference Paper | IST-REx-ID: 2888
Henzinger TA. 2012. Quantitative reactive models. Conference proceedings MODELS 2012. MODELS: Model-driven Engineering Languages and Systems, LNCS, vol. 7590. 1–2.
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2012 | Conference Paper | IST-REx-ID: 2890
Cerny P, Gopi S, Henzinger TA, Radhakrishna A, Totla N. 2012. Synthesis from incompatible specifications. Proceedings of the tenth ACM international conference on Embedded software. EMSOFT: Embedded Software 53–62.
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2012 | Journal Article | IST-REx-ID: 2972   OA
Chatterjee K, Doyen L. 2012. Energy parity games. Theoretical Computer Science. 458, 49–60.
View | Files available | DOI | arXiv
 
2012 | Conference Paper | IST-REx-ID: 3165
Chatterjee K, Henzinger M. 2012. An O(n2) time algorithm for alternating Büchi games. Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms. SODA: Symposium on Discrete Algorithms 1386–1399.
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2012 | Journal Article | IST-REx-ID: 3254
Chatterjee K. 2012. The complexity of stochastic Müller games. Information and Computation. 211, 29–48.
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2012 | Conference Paper | IST-REx-ID: 2048   OA
Faust S, Pietrzak KZ, Schipper J. 2012. Practical leakage-resilient symmetric cryptography. Conference proceedings CHES 2012. CHES: Cryptographic Hardware and Embedded Systems, LNCS, vol. 7428. 213–232.
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2012 | Journal Article | IST-REx-ID: 2411   OA
Ebersberger I, De Matos Simoes R, Kupczok A, Gube M, Kothe E, Voigt K, Von Haeseler A. 2012. A consistent phylogenetic backbone for the fungi. Molecular Biology and Evolution. 29(5), 1319–1334.
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2012 | Journal Article | IST-REx-ID: 2904   OA
Pausinger F. 2012. Weak multipliers for generalized van der Corput sequences. Journal de Theorie des Nombres des Bordeaux. 24(3), 729–749.
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2012 | Preprint | IST-REx-ID: 2928   OA
Kolmogorov V, Schoenemann T. 2012. Generalized sequential tree-reweighted message passing. arXiv.
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2012 | Conference Paper | IST-REx-ID: 2930   OA
Huber A, Kolmogorov V. 2012. Towards minimizing k-submodular functions. ISCO: International Symposium on Combinatorial Optimization, LNCS, vol. 7422. 451–462.
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2012 | Journal Article | IST-REx-ID: 2959   OA
Uhler C. 2012. Geometry of maximum likelihood estimation in Gaussian graphical models. Annals of Statistics. 40(1), 238–261.
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2012 | Journal Article | IST-REx-ID: 2954   OA
Pernia-Andrade A, Goswami S, Stickler Y, Fröbe U, Schlögl A, Jonas PM. 2012. A deconvolution based method with high sensitivity and temporal resolution for detection of spontaneous synaptic currents in vitro and in vivo. Biophysical Journal. 103(7), 1429–1439.
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2012 | Journal Article | IST-REx-ID: 2966   OA
Cremer S, Suefuji M, Schrempf A, Heinze J. 2012. The dynamics of male-male competition in Cardiocondyla obscurior ants. BMC Ecology. 12, 7.
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2012 | Journal Article | IST-REx-ID: 3159   OA
Mileyko Y, Edelsbrunner H, Price C, Weitz J. 2012. Hierarchical ordering of reticular networks. PLoS One. 7(6), e36715.
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2012 | Journal Article | IST-REx-ID: 3161   OA
Vyleta M, Wong J, Magun B. 2012. Suppression of ribosomal function triggers innate immune signaling through activation of the NLRP3 inflammasome. PLoS One. 7(5), e36044.
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2012 | Conference Paper | IST-REx-ID: 3123   OA
Yu J, Wojtan CJ, Turk G, Yap C. 2012. Explicit mesh surfaces for particle based fluids. Computer Graphics Forum. EUROGRAPHICS: Conference on European Association for Computer Graphics, Eurographics, vol. 31. 815–824.
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2012 | Journal Article | IST-REx-ID: 3130   OA
Bergmiller T, Ackermann M, Silander O. 2012. Patterns of evolutionary conservation of essential genes correlate with their compensability. PLoS Genetics. 8(6), e1002803.
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2012 | Journal Article | IST-REx-ID: 3166   OA
Vladar H. 2012. Amino acid fermentation at the origin of the genetic code. Biology Direct. 7, 6.
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2012 | Journal Article | IST-REx-ID: 3262   OA
Tkacik G, Walczak A, Bialek W. 2012. Optimizing information flow in small genetic networks. III. A self-interacting gene. Physical Review E statistical nonlinear and soft matter physics . 85(4), 041903.
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2012 | Journal Article | IST-REx-ID: 3274
Rieckh G, Kreuzer W, Waubke H, Balazs P. 2012. A 2.5D-Fourier-BEM model for vibrations in a tunnel running through layered anisotropic soil. Engineering Analysis with Boundary Elements. 36(6), 960–967.
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2012 | Conference Paper | IST-REx-ID: 3279
Jain A, Pietrzak KZ, Tentes A. 2012. Hardness preserving constructions of pseudorandom functions. TCC: Theory of Cryptography Conference, LNCS, vol. 7194. 369–382.
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2012 | Conference Paper | IST-REx-ID: 3281
Pietrzak KZ, Rosen A, Segev G. 2012. Lossy functions do not amplify well. TCC: Theory of Cryptography Conference, LNCS, vol. 7194. 458–475.
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2012 | Conference Paper | IST-REx-ID: 3250
Pietrzak KZ. 2012. Cryptography from learning parity with noise. SOFSEM: Current Trends in Theory and Practice of Computer Science, LNCS, vol. 7147. 99–114.
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2012 | Journal Article | IST-REx-ID: 3248   OA
Lampert C, Peters J. 2012. Real-time detection of colored objects in multiple camera streams with off-the-shelf hardware components. Journal of Real-Time Image Processing. 7(1), 31–41.
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2012 | Journal Article | IST-REx-ID: 3243
Danowski P. 2012. Zwischen Technologie und Information. Büchereiperspektiven. 1/2012, 11.
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2012 | Conference Paper | IST-REx-ID: 2891   OA
Boker U, Henzinger TA. 2012. Approximate determinization of quantitative automata. Leibniz International Proceedings in Informatics. FSTTCS: Foundations of Software Technology and Theoretical Computer Science, LIPIcs, vol. 18. 362–373.
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2012 | Conference Paper | IST-REx-ID: 2916   OA
Cerny P, Chmelik M, Henzinger TA, Radhakrishna A. 2012. Interface Simulation Distances. Electronic Proceedings in Theoretical Computer Science. GandALF: Games, Automata, Logic, and Formal Verification vol. 96. 29–42.
View | Files available | DOI | Download (ext.) | arXiv
 
2012 | Conference Paper | IST-REx-ID: 2942
Henzinger TA, Nickovic D. 2012. Independent implementability of viewpoints. Conference proceedings Monterey Workshop 2012. Monterey Workshop 2012, LNCS, vol. 7539. 380–395.
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2012 | Conference Paper | IST-REx-ID: 2947   OA
Chatterjee K, Chmelik M, Majumdar R. 2012. Equivalence of games with probabilistic uncertainty and partial observation games. ATVA: Automated Technology for Verification and Analysis, LNCS, vol. 7561. 385–399.
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2012 | Journal Article | IST-REx-ID: 3128   OA
Chatterjee K, Doyen L, Henzinger TA. 2012. A survey of partial-observation stochastic parity games. Formal Methods in System Design. 43(2), 268–284.
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2012 | Conference Paper | IST-REx-ID: 3135   OA
Brázdil B, Chatterjee K, Kučera A, Novotny P. 2012. Efficient controller synthesis for consumption games with multiple resource types. CAV: Computer Aided Verification, LNCS, vol. 7358. 23–38.
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2012 | Conference Paper | IST-REx-ID: 3255
Chatterjee K, Doyen L. 2012. Games and Markov decision processes with mean payoff parity and energy parity objectives. MEMICS: Mathematical and Engineering Methods in Computer Science, LNCS, vol. 7119. 37–46.
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2012 | Conference Paper | IST-REx-ID: 495   OA
Kruckman A, Rubin S, Sheridan J, Zax B. 2012. A Myhill Nerode theorem for automata with advice. Proceedings GandALF 2012. GandALF: Games, Automata, Logics and Formal Verification, EPTCS, vol. 96. 238–246.
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2012 | Journal Article | IST-REx-ID: 6588   OA
Pausinger F. 2012. Elementary solutions of the Bernstein problem on two intervals. Journal of Mathematical Physics, Analysis, Geometry. 8(1), 63–78.
View | Download (ext.) | WoS
 
2011 | Conference Paper | IST-REx-ID: 3270
Chen C, Kerber M. 2011. Persistent homology computation with a twist. EuroCG: European Workshop on Computational Geometry 197–200.
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2011 | Thesis | IST-REx-ID: 3275
Schumann K. 2011. The role of chemotactic gradients in dendritic cell migration, IST Austria, 141p.
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2011 | Journal Article | IST-REx-ID: 3287
Ruprecht V, Axmann M, Wieser S, Schuetz G. 2011. What can we learn from single molecule trajectories? Current Protein & Peptide Science. 12(8), 714–724.
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2011 | Conference Paper | IST-REx-ID: 3299   OA
Henzinger TA, Mateescu M. 2011. Propagation models for computing biochemical reaction networks. CMSB: Computational Methods in Systems Biology 1–3.
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2011 | Conference Paper | IST-REx-ID: 3302   OA
Henzinger TA, Singh A, Singh V, Wies T, Zufferey D. 2011. Static scheduling in clouds. HotCloud: Workshop on Hot Topics in Cloud Computing 1–6.
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2011 | Journal Article | IST-REx-ID: 3352
Fisher J, Harel D, Henzinger TA. 2011. Biology as reactivity. Communications of the ACM. 54(10), 72–82.
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2011 | Conference Paper | IST-REx-ID: 3319
Quadrianto N, Lampert C. 2011. Learning multi-view neighborhood preserving projections. ICML: International Conference on Machine Learning 425–432.
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2011 | Conference Paper | IST-REx-ID: 3326
Almagor S, Boker U, Kupferman O. 2011. What’s decidable about weighted automata . ATVA: Automated Technology for Verification and Analysis, LNCS, vol. 6996. 482–491.
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2011 | Conference Paper | IST-REx-ID: 3357
Chatterjee K, Henzinger TA, Horn F. 2011. The complexity of request-response games. LATA: Language and Automata Theory and Applications, LNCS, vol. 6638. 227–237.
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2011 | Journal Article | IST-REx-ID: 3383
Heisenberg C-PJ. 2011. Invited Lectures ‐ Symposia Area. FEBS Journal. 278(S1), 24–24.
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2011 | Journal Article | IST-REx-ID: 3388   OA
Ugelvig LV, Nielsen P, Boomsma J, Nash D. 2011. Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion. BMC Evolutionary Biology. 11(201), 201.
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2011 | Journal Article | IST-REx-ID: 3390   OA
Barton NH, Etheridge A. 2011. The relation between reproductive value and genetic contribution. Genetics. 188(4), 953–973.
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2011 | Journal Article | IST-REx-ID: 3395
Palero F, Abello P, Macpherson E, Beaumont M, Pascual M. 2011. Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster Palinurus elephas . Biological Journal of the Linnean Society. 104(2), 407–418.
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2011 | Journal Article | IST-REx-ID: 3376   OA
Bollenbach MT, Kishony R. 2011. Resolution of gene regulatory conflicts caused by combinations of antibiotics. Molecular Cell. 42(4), 413–425.
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2011 | Journal Article | IST-REx-ID: 3369
Pernia-Andrade A, Jonas PM. 2011. The multiple faces of RIM. Neuron. 69(2), 185–187.
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2011 | Journal Article | IST-REx-ID: 3371   OA
Sixt MK, Parent C. 2011. Cells on the move in Philadelphia. Molecular Biology and Evolution. 22(6), 724.
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2011 | Journal Article | IST-REx-ID: 3965
Wang B, Edelsbrunner H, Morozov D. 2011. Computing elevation maxima by searching the Gauss sphere. Journal of Experimental Algorithmics. 16(2.2), 1–13.
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2011 | Journal Article | IST-REx-ID: 3364
Didier F, Henzinger TA, Mateescu M, Wolf V. 2011. Approximation of event probabilities in noisy cellular processes. Theoretical Computer Science. 412(21), 2128–2141.
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2011 | Journal Article | IST-REx-ID: 491
Eichner A, Sixt MK. 2011. Setting the clock for recirculating lymphocytes. Science Signaling. 4(198), pe43.
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2011 | Journal Article | IST-REx-ID: 504   OA
Polechova J, Barton NH, Marion G. 2011. Erratum: Species’ range: Adaptation in space and time (American Naturalist 174 (E186 E204)) . American Naturalist. 177(4), 546–547.
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2011 | Preprint | IST-REx-ID: 3338
Chatterjee K. 2011. Bounded rationality in concurrent parity games. arXiv., 1–51.
View | Files available | Download (ext.) | arXiv
 
2011 | Technical Report | IST-REx-ID: 5384
Chatterjee K, Tracol M. 2011. Decidable problems for probabilistic automata on infinite words, IST Austria, 30p.
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2011 | Conference Paper | IST-REx-ID: 3345   OA
Chatterjee K, Doyen L. 2011. Energy and mean-payoff parity Markov Decision Processes. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 6907. 206–218.
View | Files available | DOI | Download (ext.) | arXiv
 
2011 | Journal Article | IST-REx-ID: 3269
Sheng Y, Cutler B, Chen C, Nasman J. 2011. Perceptual global illumination cancellation in complex projection environments. Computer Graphics Forum. 30(4), 1261–1268.
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2011 | Book Chapter | IST-REx-ID: 3271
Wagner H, Chen C, Vuçini E. 2011. Efficient computation of persistent homology for cubical data. Topological Methods in Data Analysis and Visualization II. , Theory, Algorithms, and Applications, 91–106.
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2011 | Journal Article | IST-REx-ID: 3288   OA
Smutny M, Wu S, Gomez G, Mangold S, Yap A, Hamilton N. 2011. Multicomponent analysis of junctional movements regulated by Myosin II isoforms at the epithelial zonula adherens. PLoS One. 6(7).
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2011 | Journal Article | IST-REx-ID: 3290   OA
Lohse K, Harrison R, Barton NH. 2011. A general method for calculating likelihoods under the coalescent process. Genetics. 189(3), 977–987.
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2011 | Preprint | IST-REx-ID: 3339   OA
Chatterjee K, De Alfaro L, Pritam R. 2011. Magnifying lens abstraction for stochastic games with discounted and long-run average objectives. arXiv.
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2011 | Conference Paper | IST-REx-ID: 3163
Lampert C. 2011. Maximum margin multi-label structured prediction. NIPS: Neural Information Processing Systems
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2011 | Conference Poster | IST-REx-ID: 3322
Lampert C. 2011. Maximum margin multi label structured prediction, Neural Information Processing Systems,p.
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2011 | Journal Article | IST-REx-ID: 3334
Edelsbrunner H, Pach J, Ziegler G. 2011. Letter from the new editors-in-chief. Discrete & Computational Geometry. 45(1), 1–2.
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2011 | Conference Paper | IST-REx-ID: 3358
Henzinger TA, Singh V, Wies T, Zufferey D. 2011. Scheduling large jobs by abstraction refinement. EuroSys 329–342.
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2011 | Journal Article | IST-REx-ID: 3372   OA
Abbot P et al. 2011. Inclusive fitness theory and eusociality. Nature. 471(7339), E1–E4.
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2011 | Conference Paper | IST-REx-ID: 3365   OA
Chatterjee K, Henzinger TA, Jobstmann B, Singh R. 2011. QUASY: quantitative synthesis tool. TACAS: Tools and Algorithms for the Construction and Analysis of Systems, LNCS, vol. 6605. 267–271.
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2011 | Journal Article | IST-REx-ID: 3377   OA
Edelsbrunner H, Morozov D, Patel A. 2011. Quantifying transversality by measuring the robustness of intersections. Foundations of Computational Mathematics. 11(3), 345–361.
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2011 | Journal Article | IST-REx-ID: 3771
Pavan A, Martins F, Santos F, Ditchfield A, Fernandes Redondo RA. 2011. Patterns of diversification in two species of short-tailed bats (Carollia Gray, 1838): the effects of historical fragmentation of Brazilian rainforests. Biological Journal of the Linnean Society. 102(3), 527–539.
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2011 | Journal Article | IST-REx-ID: 3384   OA
Tkacik G, Garrigan P, Ratliff C, Milcinski G, Klein J, Seyfarth L, Sterling P, Brainard D, Balasubramanian V. 2011. Natural images from the birthplace of the human eye. PLoS One. 6(6), e20409.
View | Files available | DOI
 
2011 | Journal Article | IST-REx-ID: 3389
Blaschko M, Shelton J, Bartels A, Lampert C, Gretton A. 2011. Semi supervised kernel canonical correlation analysis with application to human fMRI. Pattern Recognition Letters. 32(11), 1572–1583.
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2011 | Journal Article | IST-REx-ID: 3391   OA
de Vladar H, Barton NH. 2011. The contribution of statistical physics to evolutionary biology. Trends in Ecology and Evolution. 26(8), 424–432.
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2011 | Journal Article | IST-REx-ID: 3396   OA
Stockinger P, Heisenberg C-PJ, Maître J-L. 2011. Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube. Development. 138(21), 4673–4683.
View | Files available | DOI
 
2011 | Journal Article | IST-REx-ID: 3505
Sixt MK, Lämmermann T. 2011. In vitro analysis of chemotactic leukocyte migration in 3D environments. Cell Migration. 769, 149–165.
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2011 | Journal Article | IST-REx-ID: 3315
Chatterjee K, Henzinger TA, Prabhu V. 2011. Timed parity games: Complexity and robustness. Logical Methods in Computer Science. 7(4).
View | Files available | DOI
 
2011 | Journal Article | IST-REx-ID: 531
Guerraoui R, Henzinger TA, Singh V. 2011. Verification of STM on relaxed memory models. Formal Methods in System Design. 39(3), 297–331.
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2011 | Technical Report | IST-REx-ID: 5380   OA
Chatterjee K. 2011. Bounded rationality in concurrent parity games, IST Austria, 53p.
View | Files available | DOI
 
2011 | Journal Article | IST-REx-ID: 6496   OA
Park H, Oikonomou P, Guet CC, Cluzel P. 2011. Noise underlies switching behavior of the bacterial flagellum. Biophysical Journal. 101(10), 2336–2340.
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2011 | Conference Paper | IST-REx-ID: 3346   OA
Brázdil T, Brožek V, Chatterjee K, Forejt V, Kučera A. 2011. Two views on multiple mean payoff objectives in Markov Decision Processes. LICS: Logic in Computer Science
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2011 | Journal Article | IST-REx-ID: 3353   OA
Tripakis S, Lickly B, Henzinger TA, Lee E. 2011. A theory of synchronous relational interfaces. ACM Transactions on Programming Languages and Systems (TOPLAS). 33(4), 14.
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2011 | Conference Paper | IST-REx-ID: 3264
Gupta A, Popeea C, Rybalchenko A. 2011. Solving recursion-free Horn clauses over LI+UIF. APLAS: Asian Symposium on Programming Languages and Systems, LNCS, vol. 7078. 188–203.
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2011 | Conference Paper | IST-REx-ID: 3360   OA
Boker U, Henzinger TA. 2011. Determinizing discounted-sum automata. CSL: Computer Science Logic, LIPIcs, vol. 12. 82–96.
View | Files available | DOI
 
2011 | Technical Report | IST-REx-ID: 5385   OA
Boker U, Chatterjee K, Henzinger TA, Kupferman O. 2011. Temporal specifications with accumulative values, IST Austria, 14p.
View | Files available | DOI
 
2011 | Book Chapter | IST-REx-ID: 3311
Edelsbrunner H. 2011. Alpha shapes - a survey. Tessellations in the Sciences.
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2011 | Conference Paper | IST-REx-ID: 3330   OA
Kerber M, Sagraloff M. 2011. Root refinement for real polynomials. ISSAC: International Symposium on Symbolic and Algebraic Computation 209–216.
View | DOI | Download (ext.) | arXiv
 
2011 | Book Chapter | IST-REx-ID: 3335   OA
Van De Weygaert R, Vegter G, Edelsbrunner H, Jones B, Pranav P, Park C, Hellwing W, Eldering B, Kruithof N, Bos P, Hidding J, Feldbrugge J, Ten Have E, Van Engelen M, Caroli M, Teillaud M. 2011. Alpha, Betti and the Megaparsec Universe: On the topology of the Cosmic Web. Transactions on Computational Science XIV. Special Issue on Voronoi Diagrams and Delaunay Triangulation, LNCS, vol. 6970. 60–101.
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2011 | Conference Paper | IST-REx-ID: 3328
Berberich E, Hemmer M, Kerber M. 2011. A generic algebraic kernel for non linear geometric applications. SCG: Symposium on Computational Geometry 179–186.
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2011 | Journal Article | IST-REx-ID: 3784
Palero F, Guerao G, Clark P, Abello P. 2011. Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description. Journal of the Marine Biological Association of the United Kingdom. 91(2), 485–492.
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