---
_id: '14705'
abstract:
- lang: eng
text: Since the commercialization of brine shrimp (genus Artemia) in the 1950s,
this lineage, and in particular the model species Artemia franciscana, has been
the subject of extensive research. However, our understanding of the genetic mechanisms
underlying various aspects of their reproductive biology, including sex determination,
are still lacking. This is partly due to the scarcity of genomic resources for
Artemia species and crustaceans in general. Here, we present a chromosome-level
genome assembly of Artemia franciscana (Kellogg 1906), from the Great Salt Lake,
USA. The genome is 1GB, and the majority of the genome (81%) is scaffolded into
21 linkage groups using a previously published high-density linkage map. We performed
coverage and FST analyses using male and female genomic and transcriptomic reads
to quantify the extent of differentiation between the Z and W chromosomes. Additionally,
we quantified the expression levels in male and female heads and gonads and found
further evidence for dosage compensation in this species.
article_processing_charge: No
author:
- first_name: Marwan N
full_name: Elkrewi, Marwan N
id: 0B46FACA-A8E1-11E9-9BD3-79D1E5697425
last_name: Elkrewi
orcid: 0000-0002-5328-7231
citation:
ama: Elkrewi MN. Data from “Chromosome-level assembly of Artemia franciscana sheds
light on sex-chromosome differentiation.” 2024. doi:10.15479/AT:ISTA:14705
apa: Elkrewi, M. N. (2024). Data from “Chromosome-level assembly of Artemia franciscana
sheds light on sex-chromosome differentiation.” Institute of Science and Technology
Austria. https://doi.org/10.15479/AT:ISTA:14705
chicago: Elkrewi, Marwan N. “Data from ‘Chromosome-Level Assembly of Artemia Franciscana
Sheds Light on Sex-Chromosome Differentiation.’” Institute of Science and Technology
Austria, 2024. https://doi.org/10.15479/AT:ISTA:14705.
ieee: M. N. Elkrewi, “Data from ‘Chromosome-level assembly of Artemia franciscana
sheds light on sex-chromosome differentiation.’” Institute of Science and Technology
Austria, 2024.
ista: Elkrewi MN. 2024. Data from ‘Chromosome-level assembly of Artemia franciscana
sheds light on sex-chromosome differentiation’, Institute of Science and Technology
Austria, 10.15479/AT:ISTA:14705.
mla: Elkrewi, Marwan N. Data from “Chromosome-Level Assembly of Artemia Franciscana
Sheds Light on Sex-Chromosome Differentiation.” Institute of Science and Technology
Austria, 2024, doi:10.15479/AT:ISTA:14705.
short: M.N. Elkrewi, (2024).
contributor:
- contributor_type: researcher
first_name: Vincent K
id: 57854184-AAE0-11E9-8D04-98D6E5697425
last_name: Bett
- contributor_type: project_member
first_name: Ariana
id: 2A0848E2-F248-11E8-B48F-1D18A9856A87
last_name: Macon
- contributor_type: supervisor
first_name: Beatriz
id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
last_name: Vicoso
orcid: 0000-0002-4579-8306
- contributor_type: researcher
first_name: Marwan N
id: 0B46FACA-A8E1-11E9-9BD3-79D1E5697425
last_name: Elkrewi
orcid: 0000-0002-5328-7231
date_created: 2023-12-22T13:40:48Z
date_published: 2024-01-02T00:00:00Z
date_updated: 2024-02-26T09:59:29Z
day: '02'
ddc:
- '576'
department:
- _id: GradSch
- _id: BeVi
doi: 10.15479/AT:ISTA:14705
file:
- access_level: open_access
checksum: bdaf1392867786634ec5466d528c36ca
content_type: text/plain
creator: melkrewi
date_created: 2023-12-22T13:54:21Z
date_updated: 2023-12-22T13:54:21Z
file_id: '14707'
file_name: readme.txt.txt
file_size: 847
relation: main_file
success: 1
- access_level: open_access
checksum: 973e1cbdab923a71709782177980829f
content_type: application/x-zip-compressed
creator: melkrewi
date_created: 2023-12-22T14:14:06Z
date_updated: 2023-12-22T14:14:06Z
file_id: '14708'
file_name: data_artemia_franciscana_genome.zip
file_size: 343632753
relation: main_file
success: 1
file_date_updated: 2023-12-22T14:14:06Z
has_accepted_license: '1'
keyword:
- sex chromosome evolution
- genome assembly
- dosage compensation
license: https://creativecommons.org/licenses/by/4.0/
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 34ae1506-11ca-11ed-8bc3-c14f4c474396
grant_number: F8810
name: The highjacking of meiosis for asexual reproduction
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '15009'
relation: used_in_publication
status: public
status: public
title: Data from "Chromosome-level assembly of Artemia franciscana sheds light on
sex-chromosome differentiation"
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
_id: '12820'
abstract:
- lang: eng
text: "Disulfide bond formation is fundamentally important for protein structure,
and constitutes a key mechanism by which cells regulate the intracellular oxidation
state. Peroxiredoxins (PRDXs) eliminate reactive oxygen species such as hydrogen
peroxide through a catalytic cycle of Cys oxidation and reduction. Additionally,
upon Cys oxidation PRDXs undergo extensive conformational rearrangements that
may underlie their presently structurally poorly defined functions as molecular
chaperones. Rearrangements include high molecular-weight oligomerization, the
dynamics of which are, however, poorly understood, as is the impact of disulfide
bond formation on these properties. Here we show that formation of disulfide bonds
along the catalytic cycle induces extensive microsecond time scale dynamics, as
monitored by magic-angle spinning NMR of the 216 kDa-large Tsa1 decameric assembly
and solution-NMR of a designed dimeric mutant. We ascribe the conformational dynamics
to structural frustration, resulting from conflicts between the disulfide-constrained
reduction of mobility and the desire to fulfil other favorable contacts. \r\n\r\nThis
data repository contains NMR data presented in the associated manuscript"
article_processing_charge: No
author:
- first_name: Paul
full_name: Schanda, Paul
id: 7B541462-FAF6-11E9-A490-E8DFE5697425
last_name: Schanda
orcid: 0000-0002-9350-7606
citation:
ama: Schanda P. Research data of the publication “Disulfide-bond-induced structural
frustration and dynamic disorder in a peroxiredoxin from MAS NMR.” 2023. doi:10.15479/AT:ISTA:12820
apa: Schanda, P. (2023). Research data of the publication “Disulfide-bond-induced
structural frustration and dynamic disorder in a peroxiredoxin from MAS NMR.”
Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:12820
chicago: Schanda, Paul. “Research Data of the Publication ‘Disulfide-Bond-Induced
Structural Frustration and Dynamic Disorder in a Peroxiredoxin from MAS NMR.’”
Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/AT:ISTA:12820.
ieee: P. Schanda, “Research data of the publication ‘Disulfide-bond-induced structural
frustration and dynamic disorder in a peroxiredoxin from MAS NMR.’” Institute
of Science and Technology Austria, 2023.
ista: Schanda P. 2023. Research data of the publication ‘Disulfide-bond-induced
structural frustration and dynamic disorder in a peroxiredoxin from MAS NMR’,
Institute of Science and Technology Austria, 10.15479/AT:ISTA:12820.
mla: Schanda, Paul. Research Data of the Publication “Disulfide-Bond-Induced
Structural Frustration and Dynamic Disorder in a Peroxiredoxin from MAS NMR.”
Institute of Science and Technology Austria, 2023, doi:10.15479/AT:ISTA:12820.
short: P. Schanda, (2023).
contributor:
- contributor_type: researcher
first_name: Laura
last_name: Troussicot
- contributor_type: researcher
first_name: Björn M.
last_name: Burmann
date_created: 2023-04-10T05:55:56Z
date_published: 2023-04-18T00:00:00Z
date_updated: 2023-08-01T14:48:08Z
day: '18'
ddc:
- '570'
department:
- _id: PaSc
doi: 10.15479/AT:ISTA:12820
file:
- access_level: open_access
checksum: 54a619605e44c871214fb0e07b05c6bf
content_type: application/zip
creator: pschanda
date_created: 2023-04-14T09:39:33Z
date_updated: 2023-04-14T09:39:33Z
file_id: '12823'
file_name: data_deposition.zip
file_size: 54184807
relation: main_file
success: 1
- access_level: open_access
checksum: 8dede9fc78399d13144eb05c62bf5750
content_type: application/octet-stream
creator: pschanda
date_created: 2023-04-14T09:39:58Z
date_updated: 2023-04-14T09:39:58Z
file_id: '12824'
file_name: README
file_size: 4978
relation: main_file
success: 1
file_date_updated: 2023-04-14T09:39:58Z
has_accepted_license: '1'
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '04'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '13095'
relation: used_in_publication
status: public
status: public
title: Research data of the publication "Disulfide-bond-induced structural frustration
and dynamic disorder in a peroxiredoxin from MAS NMR"
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '12945'
abstract:
- lang: eng
text: "basic data for use in code for experimental data analysis for manuscript
under revision: \r\nDynamic pathogen detection and social feedback shape collective
hygiene in ants\r\nCasillas-Pérez B, Boďová K, Grasse AV, Tkačik G, Cremer S"
acknowledged_ssus:
- _id: LifeSc
acknowledgement: This project has received funding from the European Research Council
(ERC) under the European Union’s Horizon 2020 research and innovation programme
(Grant No. 771402; EPIDEMICSonCHIP) to SC, from the Scientific Grant Agency of the
Slovak Republic (Grant No. 1/0521/20) to KB, and the Human Frontier Science Program
(Grant No. RGP0065/2012) to GT.
article_processing_charge: No
author:
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
citation:
ama: 'Cremer S. Data from: “Dynamic pathogen detection and social feedback shape
collective hygiene in ants” . 2023. doi:10.15479/AT:ISTA:12945'
apa: 'Cremer, S. (2023). Data from: “Dynamic pathogen detection and social feedback
shape collective hygiene in ants” . Institute of Science and Technology Austria.
https://doi.org/10.15479/AT:ISTA:12945'
chicago: 'Cremer, Sylvia. “Data from: ‘Dynamic Pathogen Detection and Social Feedback
Shape Collective Hygiene in Ants’ .” Institute of Science and Technology Austria,
2023. https://doi.org/10.15479/AT:ISTA:12945.'
ieee: 'S. Cremer, “Data from: ‘Dynamic pathogen detection and social feedback shape
collective hygiene in ants’ .” Institute of Science and Technology Austria, 2023.'
ista: 'Cremer S. 2023. Data from: ‘Dynamic pathogen detection and social feedback
shape collective hygiene in ants’ , Institute of Science and Technology Austria,
10.15479/AT:ISTA:12945.'
mla: 'Cremer, Sylvia. Data from: “Dynamic Pathogen Detection and Social Feedback
Shape Collective Hygiene in Ants” . Institute of Science and Technology Austria,
2023, doi:10.15479/AT:ISTA:12945.'
short: S. Cremer, (2023).
contributor:
- contributor_type: data_collector
first_name: Barbara E
id: 351ED2AA-F248-11E8-B48F-1D18A9856A87
last_name: Casillas Perez
- contributor_type: data_collector
first_name: Anna V
id: 406F989C-F248-11E8-B48F-1D18A9856A87
last_name: Grasse
- contributor_type: researcher
first_name: Katarina
last_name: Bodova
- contributor_type: supervisor
first_name: Gašper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkačik
orcid: 0000-0002-6699-1455
date_created: 2023-05-11T21:35:17Z
date_published: 2023-05-12T00:00:00Z
date_updated: 2023-08-07T13:09:09Z
day: '12'
ddc:
- '570'
department:
- _id: SyCr
doi: 10.15479/AT:ISTA:12945
file:
- access_level: open_access
checksum: 3eadf17fd59ad8c98bf10bf63061863c
content_type: application/zip
creator: scremer
date_created: 2023-05-12T08:04:04Z
date_updated: 2023-05-12T08:04:04Z
file_id: '12947'
file_name: Experimental_data.zip
file_size: 3414674
relation: main_file
success: 1
- access_level: open_access
checksum: 1b5e8e01a0989154a76b44e6d8d68f89
content_type: application/octet-stream
creator: scremer
date_created: 2023-05-12T08:04:08Z
date_updated: 2023-05-12T08:04:08Z
file_id: '12948'
file_name: README_Experimental_Data.md
file_size: 2113
relation: main_file
success: 1
file_date_updated: 2023-05-12T08:04:08Z
has_accepted_license: '1'
keyword:
- collective behavior
- host-pathogen interactions
- social immunity
- epidemiology
- social insects
- probabilistic modeling
month: '05'
oa: 1
oa_version: None
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '13127'
relation: used_in_publication
status: public
status: public
title: 'Data from: "Dynamic pathogen detection and social feedback shape collective
hygiene in ants" '
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '12370'
abstract:
- lang: eng
text: 'Statistics of natural scenes are not uniform - their structure varies dramatically
from ground to sky. It remains unknown whether these non-uniformities are reflected
in the large-scale organization of the early visual system and what benefits such
adaptations would confer. Here, by relying on the efficient coding hypothesis,
we predict that changes in the structure of receptive fields across visual space
increase the efficiency of sensory coding. We show experimentally that, in agreement
with our predictions, receptive fields of retinal ganglion cells change their
shape along the dorsoventral retinal axis, with a marked surround asymmetry at
the visual horizon. Our work demonstrates that, according to principles of efficient
coding, the panoramic structure of natural scenes is exploited by the retina across
space and cell-types. '
acknowledged_ssus:
- _id: ScienComp
- _id: M-Shop
- _id: Bio
- _id: PreCl
- _id: LifeSc
article_processing_charge: No
author:
- first_name: Divyansh
full_name: Gupta, Divyansh
id: 2A485EBE-F248-11E8-B48F-1D18A9856A87
last_name: Gupta
orcid: 0000-0001-7400-6665
- first_name: Anton L
full_name: Sumser, Anton L
id: 3320A096-F248-11E8-B48F-1D18A9856A87
last_name: Sumser
orcid: 0000-0002-4792-1881
- first_name: Maximilian A
full_name: Jösch, Maximilian A
id: 2BD278E6-F248-11E8-B48F-1D18A9856A87
last_name: Jösch
orcid: 0000-0002-3937-1330
citation:
ama: 'Gupta D, Sumser AL, Jösch MA. Research Data for: Panoramic visual statistics
shape retina-wide organization of receptive fields. 2023. doi:10.15479/AT:ISTA:12370'
apa: 'Gupta, D., Sumser, A. L., & Jösch, M. A. (2023). Research Data for: Panoramic
visual statistics shape retina-wide organization of receptive fields. Institute
of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:12370'
chicago: 'Gupta, Divyansh, Anton L Sumser, and Maximilian A Jösch. “Research Data
for: Panoramic Visual Statistics Shape Retina-Wide Organization of Receptive Fields.”
Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/AT:ISTA:12370.'
ieee: 'D. Gupta, A. L. Sumser, and M. A. Jösch, “Research Data for: Panoramic visual
statistics shape retina-wide organization of receptive fields.” Institute of Science
and Technology Austria, 2023.'
ista: 'Gupta D, Sumser AL, Jösch MA. 2023. Research Data for: Panoramic visual statistics
shape retina-wide organization of receptive fields, Institute of Science and Technology
Austria, 10.15479/AT:ISTA:12370.'
mla: 'Gupta, Divyansh, et al. Research Data for: Panoramic Visual Statistics
Shape Retina-Wide Organization of Receptive Fields. Institute of Science and
Technology Austria, 2023, doi:10.15479/AT:ISTA:12370.'
short: D. Gupta, A.L. Sumser, M.A. Jösch, (2023).
contributor:
- contributor_type: researcher
first_name: Olga
id: 3C0C7BC6-F248-11E8-B48F-1D18A9856A87
last_name: Symonova
- contributor_type: researcher
first_name: Wiktor F
id: 358A453A-F248-11E8-B48F-1D18A9856A87
last_name: Mlynarski
- contributor_type: researcher
first_name: Jan
id: f7f724c3-9d6f-11ed-9f44-e5c5f3a5bee2
last_name: Svaton
date_created: 2023-01-25T12:45:18Z
date_published: 2023-01-26T00:00:00Z
date_updated: 2023-10-04T11:41:04Z
day: '26'
ddc:
- '571'
department:
- _id: GradSch
- _id: MaJö
doi: 10.15479/AT:ISTA:12370
ec_funded: 1
file:
- access_level: open_access
checksum: 172cd1c315cbf063c122298396bc17a7
content_type: text/plain
creator: dgupta
date_created: 2023-01-26T10:51:34Z
date_updated: 2023-01-26T10:51:34Z
file_id: '12396'
file_name: readme_exvivo.txt
file_size: 1917
relation: main_file
success: 1
- access_level: open_access
checksum: d3cecda51cad86b1182195731c01a14f
content_type: text/plain
creator: dgupta
date_created: 2023-01-26T10:50:50Z
date_updated: 2023-01-26T10:50:50Z
file_id: '12397'
file_name: readme_invivo.txt
file_size: 1585
relation: main_file
success: 1
- access_level: open_access
checksum: b85018b27f2c43a6d94ee0e8b841220d
content_type: application/octet-stream
creator: dgupta
date_created: 2023-01-26T10:43:30Z
date_updated: 2023-01-26T10:43:30Z
file_id: '12398'
file_name: exvivo_RFs.mat
file_size: 5019459775
relation: main_file
success: 1
- access_level: open_access
checksum: f75dccd96a3f837cdeed65b5134e697e
content_type: application/octet-stream
creator: dgupta
date_created: 2023-01-26T10:40:35Z
date_updated: 2023-01-26T10:40:35Z
file_id: '12399'
file_name: RGC_in_vivo_RFs_selected.mat
file_size: 94999721
relation: main_file
success: 1
- access_level: open_access
checksum: d41836ffe03ea0efb677de31287c8d2e
content_type: application/octet-stream
creator: dgupta
date_created: 2023-01-25T16:03:49Z
date_updated: 2023-01-25T16:03:49Z
file_id: '12382'
file_name: invivo_BL6-eyeGC8m-dC-3_210924_1534_Result.mat
file_size: 720893739
relation: main_file
success: 1
- access_level: open_access
checksum: 0a0cba5208241a95f9bb7684d0a43afa
content_type: application/octet-stream
creator: dgupta
date_created: 2023-01-25T16:03:30Z
date_updated: 2023-01-25T16:03:30Z
file_id: '12383'
file_name: invivo_BL6-eyeGC8m-dC-3_211026_1235_Result.mat
file_size: 248122209
relation: main_file
success: 1
- access_level: open_access
checksum: cf72c1f325631212f305ff1a6d342bc3
content_type: application/octet-stream
creator: dgupta
date_created: 2023-01-25T16:04:54Z
date_updated: 2023-01-25T16:04:54Z
file_id: '12384'
file_name: invivo_BL6-eyeGC8m-dC-3_211202_1505_Result.mat
file_size: 1757729346
relation: main_file
success: 1
- access_level: open_access
checksum: f4cd25f37d433a7dced3aa8cc326c755
content_type: application/octet-stream
creator: dgupta
date_created: 2023-01-25T16:04:41Z
date_updated: 2023-01-25T16:04:41Z
file_id: '12385'
file_name: invivo_BL6-eyeGC8m-dC-3_211208_1738_Result.mat
file_size: 1177344595
relation: main_file
success: 1
- access_level: open_access
checksum: 8c31637d447f2088fdb5ba1c6775f243
content_type: application/octet-stream
creator: dgupta
date_created: 2023-01-25T16:06:22Z
date_updated: 2023-01-25T16:06:22Z
file_id: '12386'
file_name: invivo_BL6-eyeGC8m-dC-3_220111_1735_Result.mat
file_size: 2246592895
relation: main_file
success: 1
- access_level: open_access
checksum: 246d660ef06a9151c59b74490d991460
content_type: application/octet-stream
creator: dgupta
date_created: 2023-01-25T16:07:41Z
date_updated: 2023-01-25T16:07:41Z
file_id: '12387'
file_name: invivo_BL6-eyeGC8m-dC-4_220216_0950_Result.mat
file_size: 2151341770
relation: main_file
success: 1
- access_level: open_access
checksum: b32987dd4589d05b9dfadb93d4178c0d
content_type: application/octet-stream
creator: dgupta
date_created: 2023-01-26T10:19:02Z
date_updated: 2023-01-26T10:19:02Z
file_id: '12393'
file_name: invivo_BL6-eyeGC8m-dC-4_220428_1351_Result.mat
file_size: 3719145736
relation: main_file
success: 1
- access_level: open_access
checksum: 6c88ca7d1df405f04002146d251dc22e
content_type: application/octet-stream
creator: dgupta
date_created: 2023-01-26T10:34:46Z
date_updated: 2023-01-26T10:34:46Z
file_id: '12395'
file_name: invivo_BL6-eyeGC8m-dC-4_220502_1357_Result.mat
file_size: 5818789752
relation: main_file
success: 1
- access_level: open_access
checksum: 494057076bb0b0a28e4b7146bb50113c
content_type: application/octet-stream
creator: dgupta
date_created: 2023-01-26T10:23:19Z
date_updated: 2023-01-26T10:23:19Z
file_id: '12394'
file_name: invivo_BL6-eyeGC8m-dC-4_220524_1726_Result.mat
file_size: 2614677996
relation: main_file
success: 1
- access_level: open_access
checksum: e51015d43ede6b1628803c58e424f99f
content_type: application/octet-stream
creator: dgupta
date_created: 2023-01-25T16:20:51Z
date_updated: 2023-01-25T16:20:51Z
file_id: '12388'
file_name: invivo_BL6-eyeGC8m-dC-5_220613_1750_Result.mat
file_size: 1840481462
relation: main_file
success: 1
- access_level: open_access
checksum: 9483686a44e69eadea428b705c33a9a2
content_type: application/octet-stream
creator: dgupta
date_created: 2023-01-25T16:23:02Z
date_updated: 2023-01-25T16:23:02Z
file_id: '12389'
file_name: invivo_BL6-eyeGC8m-dC-5_220630_1518_Result.mat
file_size: 1617777136
relation: main_file
success: 1
file_date_updated: 2023-01-26T10:51:34Z
has_accepted_license: '1'
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '665385'
name: International IST Doctoral Program
- _id: 626c45b5-2b32-11ec-9570-e509828c1ba6
grant_number: P34015
name: Efficient coding with biophysical realism
- _id: 2634E9D2-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '756502'
name: Circuits of Visual Attention
- _id: 266D407A-B435-11E9-9278-68D0E5697425
grant_number: LT000256
name: Neuronal networks of salience and spatial detection in the murine superior
colliculus
- _id: 264FEA02-B435-11E9-9278-68D0E5697425
grant_number: ALTF 1098-2017
name: Connecting sensory with motor processing in the superior colliculus
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '12349'
relation: used_in_publication
status: public
status: public
title: 'Research Data for: Panoramic visual statistics shape retina-wide organization
of receptive fields'
tmp:
image: /images/cc_by_nc_sa.png
legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
BY-NC-SA 4.0)
short: CC BY-NC-SA (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '12949'
abstract:
- lang: eng
text: The classical infinitesimal model is a simple and robust model for the inheritance
of quantitative traits. In this model, a quantitative trait is expressed as the
sum of a genetic and a non-genetic (environmental) component and the genetic component
of offspring traits within a family follows a normal distribution around the average
of the parents’ trait values, and has a variance that is independent of the trait
values of the parents. Although the trait distribution across the whole population
can be far from normal, the trait distributions within families are normally distributed
with a variance-covariance matrix that is determined entirely by that in the
ancestral population and the probabilities of identity determined by the pedigree.
Moreover, conditioning on some of the trait values within the pedigree has predictable
effects on the mean and variance within and between families. In previous work,
Barton et al. (2017), we showed that when trait values are determined by the sum
of a large number of Mendelian factors, each of small effect, one can justify
the infinitesimal model as limit of Mendelian inheritance. It was also shown that
under some forms of epistasis, trait values within a family are still normally
distributed.
article_processing_charge: No
author:
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
citation:
ama: Barton NH. The infinitesimal model with dominance. 2023. doi:10.15479/AT:ISTA:12949
apa: Barton, N. H. (2023). The infinitesimal model with dominance. Institute of
Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:12949
chicago: Barton, Nicholas H. “The Infinitesimal Model with Dominance.” Institute
of Science and Technology Austria, 2023. https://doi.org/10.15479/AT:ISTA:12949.
ieee: N. H. Barton, “The infinitesimal model with dominance.” Institute of Science
and Technology Austria, 2023.
ista: Barton NH. 2023. The infinitesimal model with dominance, Institute of Science
and Technology Austria, 10.15479/AT:ISTA:12949.
mla: Barton, Nicholas H. The Infinitesimal Model with Dominance. Institute
of Science and Technology Austria, 2023, doi:10.15479/AT:ISTA:12949.
short: N.H. Barton, (2023).
contributor:
- contributor_type: researcher
first_name: Amandine
last_name: Veber
- contributor_type: researcher
first_name: Alison
last_name: Etheridge
date_created: 2023-05-13T09:49:09Z
date_published: 2023-05-13T00:00:00Z
date_updated: 2023-10-30T13:04:11Z
day: '13'
ddc:
- '576'
department:
- _id: NiBa
doi: 10.15479/AT:ISTA:12949
file:
- access_level: open_access
checksum: b0ce7d4b1ee7e7265430ceed36fc3336
content_type: application/octet-stream
creator: nbarton
date_created: 2023-05-13T09:36:33Z
date_updated: 2023-05-13T09:36:33Z
file_id: '12950'
file_name: Neutral identities 16th Jan
file_size: 13662
relation: main_file
success: 1
- access_level: open_access
checksum: ad5035ad4f7d3b150a252c79884f6a83
content_type: application/octet-stream
creator: nbarton
date_created: 2023-05-13T09:38:17Z
date_updated: 2023-05-13T09:38:17Z
file_id: '12951'
file_name: p, zA, zD, N=30 neutral III
file_size: 181619928
relation: main_file
success: 1
- access_level: open_access
checksum: 62182a1de796256edd6f4223704312ef
content_type: application/octet-stream
creator: nbarton
date_created: 2023-05-13T09:41:59Z
date_updated: 2023-05-13T09:41:59Z
file_id: '12952'
file_name: p, zA, zD, N=30 neutral IV
file_size: 605902074
relation: main_file
success: 1
- access_level: open_access
checksum: af775dda5c4f6859cb1e5a81ec40a667
content_type: application/octet-stream
creator: nbarton
date_created: 2023-05-13T09:46:52Z
date_updated: 2023-05-13T09:46:52Z
file_id: '12953'
file_name: p, zA, zD, N=30 selected k=5
file_size: 1018238746
relation: main_file
success: 1
- access_level: open_access
checksum: af26f3394c387d3ada14b434cd68b1e5
content_type: application/octet-stream
creator: nbarton
date_created: 2023-05-13T09:42:05Z
date_updated: 2023-05-13T09:42:05Z
file_id: '12954'
file_name: Pairwise F N=30 neutral II
file_size: 3197160
relation: main_file
success: 1
- access_level: open_access
checksum: d5da7dc0e7282dd48222e26d12e34220
content_type: application/octet-stream
creator: nbarton
date_created: 2023-05-13T09:42:06Z
date_updated: 2023-05-13T09:42:06Z
file_id: '12955'
file_name: Pedigrees N=30 neutral II
file_size: 55492
relation: main_file
success: 1
- access_level: open_access
checksum: 00f386d80677590e29f6235d49cba58d
content_type: application/octet-stream
creator: nbarton
date_created: 2023-05-13T09:46:06Z
date_updated: 2023-05-13T09:46:06Z
file_id: '12956'
file_name: selected reps N=30 selected k=1,2 300 reps III
file_size: 474003467
relation: main_file
success: 1
- access_level: open_access
checksum: 658cef3eaea6136a4d24da4f074191d7
content_type: application/octet-stream
creator: nbarton
date_created: 2023-05-13T09:46:08Z
date_updated: 2023-05-13T09:46:08Z
file_id: '12957'
file_name: Algorithm for caclulating identities.nb
file_size: 121209
relation: main_file
success: 1
- access_level: open_access
checksum: db9b6dddd7a596d974e25f5e78f5c45c
content_type: application/octet-stream
creator: nbarton
date_created: 2023-05-13T09:46:08Z
date_updated: 2023-05-13T09:46:08Z
file_id: '12958'
file_name: Infinitesimal with dominance.nb
file_size: 1803898
relation: main_file
success: 1
- access_level: open_access
checksum: 91f80a9fb58cae8eef2d8bf59fe30189
content_type: text/plain
creator: nbarton
date_created: 2023-05-16T04:09:08Z
date_updated: 2023-05-16T04:09:08Z
file_id: '12967'
file_name: ReadMe.txt
file_size: 990
relation: main_file
success: 1
file_date_updated: 2023-05-16T04:09:08Z
has_accepted_license: '1'
keyword:
- Quantitative genetics
- infinitesimal model
month: '05'
oa: 1
oa_version: Published Version
project:
- _id: bd6958e0-d553-11ed-ba76-86eba6a76c00
grant_number: '101055327'
name: Understanding the evolution of continuous genomes
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '14452'
relation: used_in_publication
status: public
status: public
title: The infinitesimal model with dominance
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...