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Therefore, it requires the observation of the whole organ with a high spatial- as well as temporal resolution over prolonged periods of time, which may cause photo-toxic effects. This protocol shows a plant sample preparation method for light-sheet microscopy, which is characterized by mounting the plant vertically on the surface of a gel. The plant is mounted in such a way that the roots are submerged in a liquid medium while the leaves remain in the air. In order to ensure photosynthetic activity of the plant, a custom-made lighting system illuminates the leaves. To keep the roots in darkness the water surface is covered with sheets of black plastic foil. This method allows long-term imaging of plant organ development in standardized conditions. \r\nThe Video is licensed under a CC BY NC ND license. 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Light Sheet Fluorescence Microscopy of Plant Roots Growing on the Surface of a Gel. Institute of Science and Technology Austria, 2017, doi:10.15479/AT:ISTA:66.","short":"D. von Wangenheim, R. Hauschild, J. Friml, (2017).","ista":"von Wangenheim D, Hauschild R, Friml J. 2017. Light Sheet Fluorescence microscopy of plant roots growing on the surface of a gel, Institute of Science and Technology Austria, 10.15479/AT:ISTA:66.","ieee":"D. von Wangenheim, R. Hauschild, and J. Friml, “Light Sheet Fluorescence microscopy of plant roots growing on the surface of a gel.” Institute of Science and Technology Austria, 2017.","apa":"von Wangenheim, D., Hauschild, R., & Friml, J. (2017). Light Sheet Fluorescence microscopy of plant roots growing on the surface of a gel. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:66","ama":"von Wangenheim D, Hauschild R, Friml J. 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Live Tracking of Moving Samples in Confocal Microscopy for Vertically Grown Roots. Institute of Science and Technology Austria, 2017, doi:10.15479/AT:ISTA:69.","short":"R. Hauschild, (2017).","chicago":"Hauschild, Robert. “Live Tracking of Moving Samples in Confocal Microscopy for Vertically Grown Roots.” Institute of Science and Technology Austria, 2017. https://doi.org/10.15479/AT:ISTA:69.","ama":"Hauschild R. Live tracking of moving samples in confocal microscopy for vertically grown roots. 2017. doi:10.15479/AT:ISTA:69","ista":"Hauschild R. 2017. Live tracking of moving samples in confocal microscopy for vertically grown roots, Institute of Science and Technology Austria, 10.15479/AT:ISTA:69.","apa":"Hauschild, R. (2017). Live tracking of moving samples in confocal microscopy for vertically grown roots. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:69","ieee":"R. Hauschild, “Live tracking of moving samples in confocal microscopy for vertically grown roots.” Institute of Science and Technology Austria, 2017."},"has_accepted_license":"1","article_processing_charge":"No","day":"21","month":"07","keyword":["tool","tracking","confocal microscopy"]},{"month":"02","day":"19","has_accepted_license":"1","article_processing_charge":"No","citation":{"chicago":"Ellis, Thomas, and David Field. “Flower Colour Data and Phylogeny (NEXUS) Files.” Institute of Science and Technology Austria, 2016. https://doi.org/10.15479/AT:ISTA:34.","mla":"Ellis, Thomas, and David Field. Flower Colour Data and Phylogeny (NEXUS) Files. Institute of Science and Technology Austria, 2016, doi:10.15479/AT:ISTA:34.","short":"T. Ellis, D. Field, (2016).","ista":"Ellis T, Field D. 2016. Flower colour data and phylogeny (NEXUS) files, Institute of Science and Technology Austria, 10.15479/AT:ISTA:34.","apa":"Ellis, T., & Field, D. (2016). Flower colour data and phylogeny (NEXUS) files. 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We then used the R package 'diversitree' to examine patterns of evolutionary transitions between anthocyanin and yellow pigmentation across the phylogeny.\r\n\r\nFor full details of the methods see:\r\nEllis TJ and Field DL \"Repeated gains in yellow and anthocyanin pigmentation in flower colour transitions in the Antirrhineae”, Annals of Botany (in press)","lang":"eng"}],"file_date_updated":"2020-07-14T12:47:00Z","publist_id":"5828","_id":"5550","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2016","ddc":["576"],"title":"Flower colour data and phylogeny (NEXUS) files","status":"public","publisher":"Institute of Science and Technology Austria","department":[{"_id":"NiBa"}],"author":[{"id":"3153D6D4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8511-0254","first_name":"Thomas","last_name":"Ellis","full_name":"Ellis, Thomas"},{"orcid":"0000-0002-4014-8478","id":"419049E2-F248-11E8-B48F-1D18A9856A87","last_name":"Field","first_name":"David","full_name":"Field, David"}],"related_material":{"record":[{"relation":"research_paper","status":"public","id":"1382"}]},"date_updated":"2024-02-21T13:49:54Z","date_created":"2018-12-12T12:31:29Z","file":[{"date_updated":"2020-07-14T12:47:00Z","date_created":"2018-12-12T13:02:27Z","checksum":"950f85b80427d357bfeff09608ba02e9","relation":"main_file","file_id":"5594","content_type":"application/zip","file_size":4468543,"creator":"system","file_name":"IST-2016-34-v1+1_tellis_flower_colour_data.zip","access_level":"open_access"}],"oa_version":"Published Version"},{"ddc":["570"],"status":"public","title":"Fiji script to determine average speed and direction of migration of cells","publisher":"Institute of Science and Technology Austria","department":[{"_id":"Bio"}],"_id":"5555","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2016","date_created":"2018-12-12T12:31:31Z","date_updated":"2024-02-21T13:50:06Z","oa_version":"Published Version","file":[{"access_level":"open_access","file_name":"IST-2016-44-v1+1_migrationAnalyzer.zip","content_type":"application/zip","file_size":20692,"creator":"system","relation":"main_file","file_id":"5621","checksum":"9f96cddbcd4ed689f48712ffe234d5e5","date_created":"2018-12-12T13:03:03Z","date_updated":"2020-07-14T12:47:02Z"}],"author":[{"full_name":"Hauschild, Robert","first_name":"Robert","last_name":"Hauschild","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9843-3522"}],"datarep_id":"44","type":"research_data","file_date_updated":"2020-07-14T12:47:02Z","abstract":[{"text":"This FIJI script calculates the population average of the migration speed as a function of time of all cells from wide field microscopy movies.","lang":"eng"}],"oa":1,"tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"citation":{"ama":"Hauschild R. 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Synthetic Discrete Tomography Problems. Institute of Science and Technology Austria, 2016, doi:10.15479/AT:ISTA:46.","apa":"Swoboda, P. (2016). Synthetic discrete tomography problems. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:46","ieee":"P. Swoboda, “Synthetic discrete tomography problems.” Institute of Science and Technology Austria, 2016.","ista":"Swoboda P. 2016. Synthetic discrete tomography problems, Institute of Science and Technology Austria, 10.15479/AT:ISTA:46.","ama":"Swoboda P. Synthetic discrete tomography problems. 2016. doi:10.15479/AT:ISTA:46"},"date_published":"2016-09-20T00:00:00Z","doi":"10.15479/AT:ISTA:46","datarep_id":"46","type":"research_data","abstract":[{"text":"Small synthetic discrete tomography problems.\r\nSizes are 32x32, 64z64 and 256x256.\r\nProjection angles are 2, 4, and 6.\r\nNumber of labels are 3 and 5.","lang":"eng"}],"file_date_updated":"2020-07-14T12:47:02Z","ddc":["006"],"title":"Synthetic discrete tomography problems","status":"public","department":[{"_id":"VlKo"}],"publisher":"Institute of Science and Technology Austria","_id":"5557","year":"2016","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2018-12-12T12:31:31Z","date_updated":"2024-02-21T13:50:21Z","file":[{"creator":"system","content_type":"application/zip","file_size":36058401,"file_name":"IST-2016-46-v1+1_discrete_tomography_synthetic.zip","access_level":"open_access","date_created":"2018-12-12T13:05:19Z","date_updated":"2020-07-14T12:47:02Z","checksum":"aa5a16a0dc888da7186fb8fc45e88439","file_id":"5645","relation":"main_file"}],"oa_version":"Published Version","author":[{"last_name":"Swoboda","first_name":"Paul","id":"446560C6-F248-11E8-B48F-1D18A9856A87","full_name":"Swoboda, Paul"}],"contributor":[{"first_name":"Jan","contributor_type":"data_collector","last_name":"Kuske"}]},{"oa_version":"Published Version","file":[{"date_updated":"2020-07-14T12:47:01Z","date_created":"2018-12-12T13:03:02Z","checksum":"4ae751b1fa4897fa216241f975a57313","relation":"main_file","file_id":"5620","content_type":"application/zip","file_size":132808,"creator":"system","file_name":"IST-2016-37-v1+1_paternity_archive.zip","access_level":"open_access"}],"date_updated":"2024-02-21T13:51:14Z","date_created":"2018-12-12T12:31:30Z","related_material":{"record":[{"relation":"research_paper","status":"public","id":"1398"}]},"contributor":[{"contributor_type":"project_manager","last_name":"Barton","first_name":"Nicholas H","orcid":"0000-0002-8548-5240","id":"4880FE40-F248-11E8-B48F-1D18A9856A87"}],"author":[{"full_name":"Field, David","last_name":"Field","first_name":"David","orcid":"0000-0002-4014-8478","id":"419049E2-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Ellis","first_name":"Thomas","orcid":"0000-0002-8511-0254","id":"3153D6D4-F248-11E8-B48F-1D18A9856A87","full_name":"Ellis, Thomas"}],"publisher":"Institute of Science and Technology Austria","department":[{"_id":"NiBa"}],"status":"public","ddc":["576"],"title":"Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012","_id":"5553","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2016","abstract":[{"lang":"eng","text":"Genotypic, phenotypic and demographic data for 2128 wild snapdragons and 1127 open-pollinated progeny from a natural hybrid zone, collected as part of Tom Ellis' PhD thesis (submitted) February 2016).\r\n\r\nTissue samples were sent to LGC Genomics in Berlin for DNA extraction, and genotyping at 70 SNP markers by KASPR genotyping. 29 of these SNPs failed to amplify reliably, and have been removed from this dataset.\r\n\r\nOther data were retreived from an online database of this population at www.antspec.org."}],"file_date_updated":"2020-07-14T12:47:01Z","type":"research_data","datarep_id":"37","date_published":"2016-02-19T00:00:00Z","doi":"10.15479/AT:ISTA:37","tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"citation":{"mla":"Field, David, and Thomas Ellis. Inference of Mating Patterns among Wild Snapdragons in a Natural Hybrid Zone in 2012. Institute of Science and Technology Austria, 2016, doi:10.15479/AT:ISTA:37.","short":"D. Field, T. Ellis, (2016).","chicago":"Field, David, and Thomas Ellis. “Inference of Mating Patterns among Wild Snapdragons in a Natural Hybrid Zone in 2012.” Institute of Science and Technology Austria, 2016. https://doi.org/10.15479/AT:ISTA:37.","ama":"Field D, Ellis T. Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012. 2016. doi:10.15479/AT:ISTA:37","ista":"Field D, Ellis T. 2016. Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012, Institute of Science and Technology Austria, 10.15479/AT:ISTA:37.","apa":"Field, D., & Ellis, T. (2016). Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:37","ieee":"D. Field and T. Ellis, “Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012.” Institute of Science and Technology Austria, 2016."},"oa":1,"article_processing_charge":"No","has_accepted_license":"1","day":"19","month":"02","keyword":["paternity assignment","pedigree","matting patterns","assortative mating","Antirrhinum majus","frequency-dependent selection","plant-pollinator interaction"]},{"file_date_updated":"2020-07-14T12:47:01Z","abstract":[{"lang":"eng","text":"Data from array experiments investigating pollinator behaviour on snapdragons in controlled conditions, and their effect on plant mating. Data were collected as part of Tom Ellis' PhD thesis , submitted February 2016.\r\n\r\nWe placed a total of 36 plants in a grid inside a closed organza tent, with a single hive of commercially bred bumblebees (Bombus hortorum). We used only the yellow-flowered Antirrhinum majus striatum and the magenta-flowered Antirrhinum majus pseudomajus, at ratios of 6:36, 12:24, 18:18, 24:12 and 30:6.\r\n\r\nAfter 24 hours to learn how to deal with snapdragons, I observed pollinators foraging on plants, and recorded the transitions between plants. Thereafter seeds on plants were allowed to develops. A sample of these were grown to maturity when their flower colour could be determined, and they were scored as yellow, magenta, or hybrid."}],"datarep_id":"35","type":"research_data","date_created":"2018-12-12T12:31:29Z","date_updated":"2024-02-21T13:51:27Z","oa_version":"Published Version","file":[{"date_created":"2018-12-12T13:05:12Z","date_updated":"2020-07-14T12:47:01Z","checksum":"aa3eb85d52b110cd192aa23147c4d4f3","relation":"main_file","file_id":"5640","file_size":32775,"content_type":"application/zip","creator":"system","file_name":"IST-2016-35-v1+1_array_data.zip","access_level":"open_access"}],"author":[{"id":"3153D6D4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8511-0254","first_name":"Thomas","last_name":"Ellis","full_name":"Ellis, Thomas"}],"related_material":{"record":[{"id":"1398","status":"public","relation":"research_paper"}]},"contributor":[{"id":"419049E2-F248-11E8-B48F-1D18A9856A87","last_name":"Field","first_name":"David"},{"id":"4880FE40-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8548-5240","first_name":"Nicholas H","last_name":"Barton"}],"status":"public","title":"Data on pollinator observations and offpsring phenotypes","publisher":"Institute of Science and Technology Austria","department":[{"_id":"NiBa"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"5551","year":"2016","day":"19","month":"02","has_accepted_license":"1","article_processing_charge":"No","date_published":"2016-02-19T00:00:00Z","doi":"10.15479/AT:ISTA:35","oa":1,"tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"citation":{"ieee":"T. Ellis, “Data on pollinator observations and offpsring phenotypes.” Institute of Science and Technology Austria, 2016.","apa":"Ellis, T. (2016). Data on pollinator observations and offpsring phenotypes. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:35","ista":"Ellis T. 2016. Data on pollinator observations and offpsring phenotypes, Institute of Science and Technology Austria, 10.15479/AT:ISTA:35.","ama":"Ellis T. Data on pollinator observations and offpsring phenotypes. 2016. doi:10.15479/AT:ISTA:35","chicago":"Ellis, Thomas. “Data on Pollinator Observations and Offpsring Phenotypes.” Institute of Science and Technology Austria, 2016. https://doi.org/10.15479/AT:ISTA:35.","short":"T. Ellis, (2016).","mla":"Ellis, Thomas. Data on Pollinator Observations and Offpsring Phenotypes. Institute of Science and Technology Austria, 2016, doi:10.15479/AT:ISTA:35."}},{"has_accepted_license":"1","article_processing_charge":"No","month":"02","day":"19","oa":1,"citation":{"chicago":"Ellis, Thomas. “Pollinator Visitation Data for Wild Antirrhinum Majus Plants, with Phenotypic and Frequency Data.” Institute of Science and Technology Austria, 2016. https://doi.org/10.15479/AT:ISTA:36.","short":"T. Ellis, (2016).","mla":"Ellis, Thomas. Pollinator Visitation Data for Wild Antirrhinum Majus Plants, with Phenotypic and Frequency Data. Institute of Science and Technology Austria, 2016, doi:10.15479/AT:ISTA:36.","apa":"Ellis, T. (2016). Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic and frequency data. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:36","ieee":"T. Ellis, “Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic and frequency data.” Institute of Science and Technology Austria, 2016.","ista":"Ellis T. 2016. Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic and frequency data., Institute of Science and Technology Austria, 10.15479/AT:ISTA:36.","ama":"Ellis T. Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic and frequency data. 2016. doi:10.15479/AT:ISTA:36"},"date_published":"2016-02-19T00:00:00Z","doi":"10.15479/AT:ISTA:36","type":"research_data","datarep_id":"36","file_date_updated":"2020-07-14T12:47:01Z","abstract":[{"lang":"eng","text":"Data on pollinator visitation to wild snapdragons in a natural hybrid zone, collected as part of Tom Ellis' PhD thesis (submitted February 2016).\r\n\r\nSnapdragon flowers have a mouth-like structure which pollinators must open to access nectar. We placed 5mm cellophane tags in these mouths, which are held in place by the pressure of the flower until a pollinator visits. When she opens the flower, the tag drops out, and one can infer a visit. We surveyed plants over multiple days in 2010, 2011 and 2012.\r\n\r\nAlso included are data on phenotypic and demographic variables which may be explanatory variables for pollinator visitation."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"5552","year":"2016","department":[{"_id":"NiBa"}],"publisher":"Institute of Science and Technology Austria","title":"Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic and frequency data.","status":"public","related_material":{"record":[{"id":"1398","status":"public","relation":"research_paper"}]},"contributor":[{"id":"419049E2-F248-11E8-B48F-1D18A9856A87","first_name":"David","last_name":"Field"},{"orcid":"0000-0002-8548-5240","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","last_name":"Barton","first_name":"Nicholas H"}],"author":[{"full_name":"Ellis, Thomas","first_name":"Thomas","last_name":"Ellis","id":"3153D6D4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8511-0254"}],"file":[{"relation":"main_file","file_id":"5625","date_updated":"2020-07-14T12:47:01Z","date_created":"2018-12-12T13:03:07Z","checksum":"cbc61b523d4d475a04a737d50dc470ef","file_name":"IST-2016-36-v1+1_tag_assay_archive.zip","access_level":"open_access","content_type":"application/zip","file_size":44905,"creator":"system"}],"oa_version":"Published Version","date_created":"2018-12-12T12:31:30Z","date_updated":"2024-02-21T13:51:40Z"},{"date_updated":"2024-02-21T13:50:34Z","date_created":"2018-12-12T12:31:30Z","oa_version":"Published Version","file":[{"relation":"main_file","file_id":"5626","date_updated":"2020-07-14T12:47:01Z","date_created":"2018-12-12T13:03:08Z","checksum":"1fc0a10bb7ce110fcb5e1fbe3cf0c4e2","file_name":"IST-2016-43-v1+1_DATA_MTugrul_PhDThesis_Chapter3.zip","access_level":"open_access","content_type":"application/zip","file_size":1123495,"creator":"system"}],"author":[{"id":"37C323C6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8523-0758","first_name":"Murat","last_name":"Tugrul","full_name":"Tugrul, Murat"}],"related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"1131"}]},"contributor":[{"id":"2C023F40-F248-11E8-B48F-1D18A9856A87","last_name":"Steinrück","contributor_type":"researcher","first_name":"Magdalena"},{"first_name":"Fabienne","contributor_type":"researcher","last_name":"Jesse","id":"4C8C26A4-F248-11E8-B48F-1D18A9856A87"}],"title":"Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase","status":"public","department":[{"_id":"NiBa"},{"_id":"JoBo"}],"publisher":"Institute of Science and Technology Austria","_id":"5554","year":"2016","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"The data stored here is used in Murat Tugrul's PhD thesis (Chapter 3), which is related to the evolution of bacterial RNA polymerase binding.\r\nMagdalena Steinrueck (PhD Student in Calin Guet's group at IST Austria) performed the experiments and created the data on de novo promoter evolution. Fabienne Jesse (PhD Student in Jon Bollback's group at IST Austria) performed the experiments and created the data on lac promoter evolution."}],"file_date_updated":"2020-07-14T12:47:01Z","datarep_id":"43","type":"research_data","doi":"10.15479/AT:ISTA:43","date_published":"2016-05-12T00:00:00Z","citation":{"ama":"Tugrul M. Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase. 2016. doi:10.15479/AT:ISTA:43","ista":"Tugrul M. 2016. Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase, Institute of Science and Technology Austria, 10.15479/AT:ISTA:43.","ieee":"M. Tugrul, “Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase.” Institute of Science and Technology Austria, 2016.","apa":"Tugrul, M. (2016). Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:43","mla":"Tugrul, Murat. Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase. Institute of Science and Technology Austria, 2016, doi:10.15479/AT:ISTA:43.","short":"M. 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(2016) Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.\r\n*equal contributions"}],"file_date_updated":"2020-07-14T12:47:02Z","citation":{"ieee":"M. Lukacisin, M. Landon, and R. Jajoo, “MATLAB analysis code for ‘Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.’” Institute of Science and Technology Austria, 2016.","apa":"Lukacisin, M., Landon, M., & Jajoo, R. (2016). MATLAB analysis code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:45","ista":"Lukacisin M, Landon M, Jajoo R. 2016. MATLAB analysis code for ‘Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:45.","ama":"Lukacisin M, Landon M, Jajoo R. MATLAB analysis code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.” 2016. doi:10.15479/AT:ISTA:45","chicago":"Lukacisin, Martin, Matthieu Landon, and Rishi Jajoo. “MATLAB Analysis Code for ‘Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.’” Institute of Science and Technology Austria, 2016. https://doi.org/10.15479/AT:ISTA:45.","short":"M. Lukacisin, M. Landon, R. Jajoo, (2016).","mla":"Lukacisin, Martin, et al. MATLAB Analysis Code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.” Institute of Science and Technology Austria, 2016, doi:10.15479/AT:ISTA:45."},"tmp":{"short":"CC BY-SA (4.0)","image":"/images/cc_by_sa.png","name":"Creative Commons Attribution-ShareAlike 4.0 International Public License (CC BY-SA 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode"},"oa":1,"date_published":"2016-08-25T00:00:00Z","doi":"10.15479/AT:ISTA:45","keyword":["transcription","pausing","backtracking","polymerase","RNA","NET-seq","nucleosome","basepairing"],"has_accepted_license":"1","article_processing_charge":"No","month":"08","day":"25"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"5549","status":"public","ddc":["004"],"title":"Experimental part of CAV 2015 publication: Counterexample Explanation by Learning Small Strategies in Markov Decision Processes","file":[{"checksum":"b8bcb43c0893023cda66c1b69c16ac62","date_created":"2018-12-12T13:02:31Z","date_updated":"2020-07-14T12:47:00Z","file_id":"5597","relation":"main_file","creator":"system","file_size":49557109,"content_type":"application/zip","access_level":"open_access","file_name":"IST-2015-28-v1+2_Fellner_DataRep.zip"}],"oa_version":"Published Version","type":"research_data","datarep_id":"28","abstract":[{"lang":"eng","text":"This repository contains the experimental part of the CAV 2015 publication Counterexample Explanation by Learning Small Strategies in Markov Decision Processes.\r\nWe extended the probabilistic model checker PRISM to represent strategies of Markov Decision Processes as Decision Trees.\r\nThe archive contains a java executable version of the extended tool (prism_dectree.jar) together with a few examples of the PRISM benchmark library.\r\nTo execute the program, please have a look at the README.txt, which provides instructions and further information on the archive.\r\nThe archive contains scripts that (if run often enough) reproduces the data presented in the publication."}],"citation":{"ama":"Fellner A. Experimental part of CAV 2015 publication: Counterexample Explanation by Learning Small Strategies in Markov Decision Processes. 2015. doi:10.15479/AT:ISTA:28","apa":"Fellner, A. (2015). Experimental part of CAV 2015 publication: Counterexample Explanation by Learning Small Strategies in Markov Decision Processes. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:28","ieee":"A. Fellner, “Experimental part of CAV 2015 publication: Counterexample Explanation by Learning Small Strategies in Markov Decision Processes.” Institute of Science and Technology Austria, 2015.","ista":"Fellner A. 2015. Experimental part of CAV 2015 publication: Counterexample Explanation by Learning Small Strategies in Markov Decision Processes, Institute of Science and Technology Austria, 10.15479/AT:ISTA:28.","short":"A. Fellner, (2015).","mla":"Fellner, Andreas. Experimental Part of CAV 2015 Publication: Counterexample Explanation by Learning Small Strategies in Markov Decision Processes. Institute of Science and Technology Austria, 2015, doi:10.15479/AT:ISTA:28.","chicago":"Fellner, Andreas. “Experimental Part of CAV 2015 Publication: Counterexample Explanation by Learning Small Strategies in Markov Decision Processes.” Institute of Science and Technology Austria, 2015. https://doi.org/10.15479/AT:ISTA:28."},"date_published":"2015-08-13T00:00:00Z","keyword":["Markov Decision Process","Decision Tree","Probabilistic Verification","Counterexample Explanation"],"has_accepted_license":"1","article_processing_charge":"No","day":"13","year":"2015","publisher":"Institute of Science and Technology Austria","department":[{"_id":"KrCh"},{"_id":"ToHe"}],"related_material":{"record":[{"relation":"popular_science","status":"public","id":"1603"}]},"contributor":[{"id":"44CEF464-F248-11E8-B48F-1D18A9856A87","first_name":"Jan","last_name":"Kretinsky"}],"author":[{"first_name":"Andreas","last_name":"Fellner","id":"42BABFB4-F248-11E8-B48F-1D18A9856A87","full_name":"Fellner, Andreas"}],"date_created":"2018-12-12T12:31:29Z","date_updated":"2024-02-21T13:52:07Z","publist_id":"5564","ec_funded":1,"file_date_updated":"2020-07-14T12:47:00Z","oa":1,"tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"project":[{"name":"Quantitative Graph Games: Theory and Applications","call_identifier":"FP7","_id":"2581B60A-B435-11E9-9278-68D0E5697425","grant_number":"279307"},{"_id":"25832EC2-B435-11E9-9278-68D0E5697425","grant_number":"S 11407_N23","call_identifier":"FWF","name":"Rigorous Systems Engineering"}],"doi":"10.15479/AT:ISTA:28","month":"08"}]