[{"publication":"The Plant Journal","day":"01","year":"2018","has_accepted_license":"1","isi":1,"date_created":"2018-12-11T11:46:17Z","date_published":"2018-06-01T00:00:00Z","doi":"10.1111/tpj.13914","page":"1010 - 1022","acknowledgement":"CN, DD and JHD were funded by the BBSRC (grant number BB/M009459/1). NC was funded by the VIPS Program of the Austrian Federal Ministry of Science and Research and the City of Vienna. AB and AF were supported by the Austrian Science Fund (FWF) [DK W1207; SFB RNAreg F43-P10]","oa":1,"publisher":"Wiley","quality_controlled":"1","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","citation":{"ama":"Cavallari N, Nibau C, Fuchs A, Dadarou D, Barta A, Doonan J. The cyclin‐dependent kinase G group defines a thermo‐sensitive alternative splicing circuit modulating the expression of Arabidopsis ATU 2AF 65A. The Plant Journal. 2018;94(6):1010-1022. doi:10.1111/tpj.13914","apa":"Cavallari, N., Nibau, C., Fuchs, A., Dadarou, D., Barta, A., & Doonan, J. (2018). The cyclin‐dependent kinase G group defines a thermo‐sensitive alternative splicing circuit modulating the expression of Arabidopsis ATU 2AF 65A. The Plant Journal. Wiley. https://doi.org/10.1111/tpj.13914","short":"N. Cavallari, C. Nibau, A. Fuchs, D. Dadarou, A. Barta, J. Doonan, The Plant Journal 94 (2018) 1010–1022.","ieee":"N. Cavallari, C. Nibau, A. Fuchs, D. Dadarou, A. Barta, and J. Doonan, “The cyclin‐dependent kinase G group defines a thermo‐sensitive alternative splicing circuit modulating the expression of Arabidopsis ATU 2AF 65A,” The Plant Journal, vol. 94, no. 6. Wiley, pp. 1010–1022, 2018.","mla":"Cavallari, Nicola, et al. “The Cyclin‐dependent Kinase G Group Defines a Thermo‐sensitive Alternative Splicing Circuit Modulating the Expression of Arabidopsis ATU 2AF 65A.” The Plant Journal, vol. 94, no. 6, Wiley, 2018, pp. 1010–22, doi:10.1111/tpj.13914.","ista":"Cavallari N, Nibau C, Fuchs A, Dadarou D, Barta A, Doonan J. 2018. The cyclin‐dependent kinase G group defines a thermo‐sensitive alternative splicing circuit modulating the expression of Arabidopsis ATU 2AF 65A. The Plant Journal. 94(6), 1010–1022.","chicago":"Cavallari, Nicola, Candida Nibau, Armin Fuchs, Despoina Dadarou, Andrea Barta, and John Doonan. “The Cyclin‐dependent Kinase G Group Defines a Thermo‐sensitive Alternative Splicing Circuit Modulating the Expression of Arabidopsis ATU 2AF 65A.” The Plant Journal. Wiley, 2018. https://doi.org/10.1111/tpj.13914."},"title":"The cyclin‐dependent kinase G group defines a thermo‐sensitive alternative splicing circuit modulating the expression of Arabidopsis ATU 2AF 65A","external_id":{"isi":["000434365500008"]},"article_processing_charge":"No","author":[{"id":"457160E6-F248-11E8-B48F-1D18A9856A87","first_name":"Nicola","full_name":"Cavallari, Nicola","last_name":"Cavallari"},{"first_name":"Candida","full_name":"Nibau, Candida","last_name":"Nibau"},{"first_name":"Armin","last_name":"Fuchs","full_name":"Fuchs, Armin"},{"first_name":"Despoina","full_name":"Dadarou, Despoina","last_name":"Dadarou"},{"full_name":"Barta, Andrea","last_name":"Barta","first_name":"Andrea"},{"last_name":"Doonan","full_name":"Doonan, John","first_name":"John"}],"publist_id":"7426","language":[{"iso":"eng"}],"file":[{"file_size":1543354,"date_updated":"2020-07-14T12:46:22Z","creator":"dernst","file_name":"2018_PlantJourn_Cavallari.pdf","date_created":"2019-02-06T11:40:54Z","content_type":"application/pdf","relation":"main_file","access_level":"open_access","file_id":"5934","checksum":"d9d3ad3215ac0e581731443fca312266"}],"publication_status":"published","license":"https://creativecommons.org/licenses/by/4.0/","volume":94,"issue":"6","oa_version":"Published Version","abstract":[{"text":"The ability to adapt growth and development to temperature variations is crucial to generate plant varieties resilient to predicted temperature changes. However, the mechanisms underlying plant response to progressive increases in temperature have just started to be elucidated. Here, we report that the Cyclin-dependent Kinase G1 (CDKG1) is a central element in a thermo-sensitive mRNA splicing cascade that transduces changes in ambient temperature into differential expression of the fundamental spliceosome component, ATU2AF65A. CDKG1 is alternatively spliced in a temperature-dependent manner. We found that this process is partly dependent on both the Cyclin-dependent Kinase G2 (CDKG2) and the interacting co-factor CYCLIN L1 resulting in two distinct messenger RNAs. Relative abundance of both CDKG1 transcripts correlates with ambient temperature and possibly with different expression levels of the associated protein isoforms. Both CDKG1 alternative transcripts are necessary to fully complement the expression of ATU2AF65A across the temperature range. Our data support a previously unidentified temperature-dependent mechanism based on the alternative splicing of CDKG1 and regulated by CDKG2 and CYCLIN L1. We propose that changes in ambient temperature affect the relative abundance of CDKG1 transcripts and this in turn translates into differential CDKG1 protein expression coordinating the alternative splicing of ATU2AF65A. This article is protected by copyright. All rights reserved.","lang":"eng"}],"intvolume":" 94","month":"06","scopus_import":"1","ddc":["580"],"date_updated":"2023-09-19T10:07:08Z","file_date_updated":"2020-07-14T12:46:22Z","department":[{"_id":"EvBe"}],"_id":"403","status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"type":"journal_article"},{"publisher":"Springer","quality_controlled":"1","oa":1,"has_accepted_license":"1","isi":1,"year":"2018","day":"12","page":"147 - 164","date_published":"2018-07-12T00:00:00Z","doi":"10.1007/978-3-319-95582-7_9","date_created":"2018-12-11T11:44:55Z","project":[{"name":"The Wittgenstein Prize","grant_number":"Z211","call_identifier":"FWF","_id":"25F42A32-B435-11E9-9278-68D0E5697425"},{"grant_number":"S 11407_N23","name":"Rigorous Systems Engineering","call_identifier":"FWF","_id":"25832EC2-B435-11E9-9278-68D0E5697425"}],"citation":{"mla":"Ferrere, Thomas. The Compound Interest in Relaxing Punctuality. Vol. 10951, Springer, 2018, pp. 147–64, doi:10.1007/978-3-319-95582-7_9.","short":"T. Ferrere, in:, Springer, 2018, pp. 147–164.","ieee":"T. Ferrere, “The compound interest in relaxing punctuality,” presented at the FM: International Symposium on Formal Methods, Oxford, UK, 2018, vol. 10951, pp. 147–164.","ama":"Ferrere T. The compound interest in relaxing punctuality. In: Vol 10951. Springer; 2018:147-164. doi:10.1007/978-3-319-95582-7_9","apa":"Ferrere, T. (2018). The compound interest in relaxing punctuality (Vol. 10951, pp. 147–164). Presented at the FM: International Symposium on Formal Methods, Oxford, UK: Springer. https://doi.org/10.1007/978-3-319-95582-7_9","chicago":"Ferrere, Thomas. “The Compound Interest in Relaxing Punctuality,” 10951:147–64. Springer, 2018. https://doi.org/10.1007/978-3-319-95582-7_9.","ista":"Ferrere T. 2018. The compound interest in relaxing punctuality. FM: International Symposium on Formal Methods, LNCS, vol. 10951, 147–164."},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","author":[{"id":"40960E6E-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas","last_name":"Ferrere","orcid":"0000-0001-5199-3143","full_name":"Ferrere, Thomas"}],"publist_id":"7765","external_id":{"isi":["000489765800009"]},"article_processing_charge":"No","title":"The compound interest in relaxing punctuality","abstract":[{"lang":"eng","text":"Imprecision in timing can sometimes be beneficial: Metric interval temporal logic (MITL), disabling the expression of punctuality constraints, was shown to translate to timed automata, yielding an elementary decision procedure. We show how this principle extends to other forms of dense-time specification using regular expressions. By providing a clean, automaton-based formal framework for non-punctual languages, we are able to recover and extend several results in timed systems. Metric interval regular expressions (MIRE) are introduced, providing regular expressions with non-singular duration constraints. We obtain that MIRE are expressively complete relative to a class of one-clock timed automata, which can be determinized using additional clocks. Metric interval dynamic logic (MIDL) is then defined using MIRE as temporal modalities. We show that MIDL generalizes known extensions of MITL, while translating to timed automata at comparable cost."}],"oa_version":"Submitted Version","alternative_title":["LNCS"],"scopus_import":"1","month":"07","intvolume":" 10951","publication_status":"published","file":[{"relation":"main_file","access_level":"open_access","content_type":"application/pdf","success":1,"checksum":"a045c213c42c445f1889326f8db82a0a","file_id":"8637","creator":"dernst","file_size":485576,"date_updated":"2020-10-09T06:22:41Z","file_name":"2018_LNCS_Ferrere.pdf","date_created":"2020-10-09T06:22:41Z"}],"language":[{"iso":"eng"}],"volume":10951,"_id":"156","type":"conference","conference":{"start_date":"2018-07-15","location":"Oxford, UK","end_date":"2018-07-17","name":"FM: International Symposium on Formal Methods"},"status":"public","date_updated":"2023-09-19T10:05:37Z","ddc":["000"],"file_date_updated":"2020-10-09T06:22:41Z","department":[{"_id":"ToHe"}]},{"author":[{"full_name":"Seitner, Denise","last_name":"Seitner","first_name":"Denise"},{"full_name":"Uhse, Simon","last_name":"Uhse","first_name":"Simon"},{"first_name":"Michelle C","id":"35A03822-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-1286-7368","full_name":"Gallei, Michelle C","last_name":"Gallei"},{"first_name":"Armin","full_name":"Djamei, Armin","last_name":"Djamei"}],"publist_id":"7950","article_processing_charge":"No","external_id":{"isi":["000445624100006"]},"title":"The core effector Cce1 is required for early infection of maize by Ustilago maydis","citation":{"mla":"Seitner, Denise, et al. “The Core Effector Cce1 Is Required for Early Infection of Maize by Ustilago Maydis.” Molecular Plant Pathology, vol. 19, no. 10, Wiley, 2018, pp. 2277–87, doi:10.1111/mpp.12698.","ieee":"D. Seitner, S. Uhse, M. C. Gallei, and A. Djamei, “The core effector Cce1 is required for early infection of maize by Ustilago maydis,” Molecular Plant Pathology, vol. 19, no. 10. Wiley, pp. 2277–2287, 2018.","short":"D. Seitner, S. Uhse, M.C. Gallei, A. Djamei, Molecular Plant Pathology 19 (2018) 2277–2287.","apa":"Seitner, D., Uhse, S., Gallei, M. C., & Djamei, A. (2018). The core effector Cce1 is required for early infection of maize by Ustilago maydis. Molecular Plant Pathology. Wiley. https://doi.org/10.1111/mpp.12698","ama":"Seitner D, Uhse S, Gallei MC, Djamei A. The core effector Cce1 is required for early infection of maize by Ustilago maydis. Molecular Plant Pathology. 2018;19(10):2277-2287. doi:10.1111/mpp.12698","chicago":"Seitner, Denise, Simon Uhse, Michelle C Gallei, and Armin Djamei. “The Core Effector Cce1 Is Required for Early Infection of Maize by Ustilago Maydis.” Molecular Plant Pathology. Wiley, 2018. https://doi.org/10.1111/mpp.12698.","ista":"Seitner D, Uhse S, Gallei MC, Djamei A. 2018. The core effector Cce1 is required for early infection of maize by Ustilago maydis. Molecular Plant Pathology. 19(10), 2277–2287."},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","page":"2277 - 2287","doi":"10.1111/mpp.12698","date_published":"2018-10-01T00:00:00Z","date_created":"2018-12-11T11:44:39Z","isi":1,"has_accepted_license":"1","year":"2018","day":"01","publication":"Molecular Plant Pathology","publisher":"Wiley","quality_controlled":"1","oa":1,"acknowledgement":"the Austrian Science Fund (FWF): [P27429‐B22, P27818‐B22, I 3033‐B22], and the Austrian Academy of Science (OEAW).","department":[{"_id":"GradSch"}],"file_date_updated":"2018-12-18T09:46:00Z","date_updated":"2023-09-19T10:06:42Z","ddc":["580"],"type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"status":"public","_id":"104","issue":"10","volume":19,"publication_status":"published","file":[{"content_type":"application/pdf","relation":"main_file","access_level":"open_access","success":1,"file_id":"5740","file_size":682335,"date_updated":"2018-12-18T09:46:00Z","creator":"dernst","file_name":"2018_MolecPlantPath_Seitner.pdf","date_created":"2018-12-18T09:46:00Z"}],"language":[{"iso":"eng"}],"scopus_import":"1","month":"10","intvolume":" 19","abstract":[{"text":"The biotrophic pathogen Ustilago maydis, the causative agent of corn smut disease, infects one of the most important crops worldwide – Zea mays. To successfully colonize its host, U. maydis secretes proteins, known as effectors, that suppress plant defense responses and facilitate the establishment of biotrophy. In this work, we describe the U. maydis effector protein Cce1. Cce1 is essential for virulence and is upregulated during infection. Through microscopic analysis and in vitro assays, we show that Cce1 is secreted from hyphae during filamentous growth of the fungus. Strikingly, Δcce1 mutants are blocked at early stages of infection and induce callose deposition as a plant defense response. Cce1 is highly conserved among smut fungi and the Ustilago bromivora ortholog complemented the virulence defect of the SG200Δcce1 deletion strain. These data indicate that Cce1 is a core effector with apoplastic localization that is essential for U. maydis to infect its host.","lang":"eng"}],"oa_version":"Published Version"},{"intvolume":" 27","month":"12","scopus_import":"1","pmid":1,"oa_version":"Published Version","abstract":[{"text":"Hanemaaijer et al. (Molecular Ecology, 27, 2018) describe the genetic consequences of the introgression of an insecticide resistance allele into a mosquito population. Linked alleles initially increased, but many of these later declined. It is hard to determine whether this decline was due to counter‐selection, rather than simply to chance.","lang":"eng"}],"volume":27,"issue":"24","related_material":{"record":[{"relation":"research_data","status":"public","id":"9805"}]},"language":[{"iso":"eng"}],"file":[{"creator":"apreinsp","file_size":295452,"date_updated":"2020-07-14T12:46:22Z","file_name":"2018_MolecularEcology_BartonNick.pdf","date_created":"2019-07-19T06:54:46Z","relation":"main_file","access_level":"open_access","content_type":"application/pdf","file_id":"6652"}],"publication_status":"published","publication_identifier":{"issn":["1365294X"]},"status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"article_type":"letter_note","type":"journal_article","_id":"40","file_date_updated":"2020-07-14T12:46:22Z","department":[{"_id":"NiBa"}],"ddc":["576"],"date_updated":"2023-09-19T10:06:08Z","oa":1,"publisher":"Wiley","quality_controlled":"1","date_created":"2018-12-11T11:44:18Z","date_published":"2018-12-31T00:00:00Z","doi":"10.1111/mec.14950","page":"4973-4975","publication":"Molecular Ecology","day":"31","year":"2018","isi":1,"has_accepted_license":"1","title":"The consequences of an introgression event","article_processing_charge":"Yes (via OA deal)","external_id":{"pmid":["30599087"],"isi":["000454600500001"]},"publist_id":"8014","author":[{"id":"4880FE40-F248-11E8-B48F-1D18A9856A87","first_name":"Nicholas H","last_name":"Barton","full_name":"Barton, Nicholas H","orcid":"0000-0002-8548-5240"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","citation":{"ama":"Barton NH. The consequences of an introgression event. Molecular Ecology. 2018;27(24):4973-4975. doi:10.1111/mec.14950","apa":"Barton, N. H. (2018). The consequences of an introgression event. Molecular Ecology. Wiley. https://doi.org/10.1111/mec.14950","ieee":"N. H. Barton, “The consequences of an introgression event,” Molecular Ecology, vol. 27, no. 24. Wiley, pp. 4973–4975, 2018.","short":"N.H. Barton, Molecular Ecology 27 (2018) 4973–4975.","mla":"Barton, Nicholas H. “The Consequences of an Introgression Event.” Molecular Ecology, vol. 27, no. 24, Wiley, 2018, pp. 4973–75, doi:10.1111/mec.14950.","ista":"Barton NH. 2018. The consequences of an introgression event. Molecular Ecology. 27(24), 4973–4975.","chicago":"Barton, Nicholas H. “The Consequences of an Introgression Event.” Molecular Ecology. Wiley, 2018. https://doi.org/10.1111/mec.14950."}},{"oa":1,"publisher":"eLife Sciences Publications","quality_controlled":"1","publication":"eLife","day":"06","year":"2018","has_accepted_license":"1","isi":1,"date_created":"2019-01-20T22:59:19Z","date_published":"2018-06-06T00:00:00Z","doi":"10.7554/eLife.37888","article_number":"e37888","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","citation":{"apa":"Alanko, J. H., & Sixt, M. K. (2018). The cell sets the tone. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.37888","ama":"Alanko JH, Sixt MK. The cell sets the tone. eLife. 2018;7. doi:10.7554/eLife.37888","ieee":"J. H. Alanko and M. K. Sixt, “The cell sets the tone,” eLife, vol. 7. eLife Sciences Publications, 2018.","short":"J.H. Alanko, M.K. Sixt, ELife 7 (2018).","mla":"Alanko, Jonna H., and Michael K. Sixt. “The Cell Sets the Tone.” ELife, vol. 7, e37888, eLife Sciences Publications, 2018, doi:10.7554/eLife.37888.","ista":"Alanko JH, Sixt MK. 2018. The cell sets the tone. eLife. 7, e37888.","chicago":"Alanko, Jonna H, and Michael K Sixt. “The Cell Sets the Tone.” ELife. eLife Sciences Publications, 2018. https://doi.org/10.7554/eLife.37888."},"title":"The cell sets the tone","article_processing_charge":"No","external_id":{"isi":["000434375000001"]},"author":[{"id":"2CC12E8C-F248-11E8-B48F-1D18A9856A87","first_name":"Jonna H","orcid":"0000-0002-7698-3061","full_name":"Alanko, Jonna H","last_name":"Alanko"},{"id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","first_name":"Michael K","orcid":"0000-0002-6620-9179","full_name":"Sixt, Michael K","last_name":"Sixt"}],"oa_version":"Published Version","abstract":[{"lang":"eng","text":"In zebrafish larvae, it is the cell type that determines how the cell responds to a chemokine signal."}],"intvolume":" 7","month":"06","scopus_import":"1","language":[{"iso":"eng"}],"file":[{"file_name":"2018_eLife_Alanko.pdf","date_created":"2019-02-13T10:52:11Z","file_size":358141,"date_updated":"2020-07-14T12:47:13Z","creator":"dernst","checksum":"f1c7ec2a809408d763c4b529a98f9a3b","file_id":"5973","content_type":"application/pdf","relation":"main_file","access_level":"open_access"}],"publication_status":"published","publication_identifier":{"issn":["2050084X"]},"volume":7,"_id":"5861","status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"type":"journal_article","article_type":"original","ddc":["570"],"date_updated":"2023-09-19T10:01:39Z","file_date_updated":"2020-07-14T12:47:13Z","department":[{"_id":"MiSi"}]}]