---
_id: '562'
abstract:
- lang: eng
text: Primary neuronal cell culture preparations are widely used to investigate
synaptic functions. This chapter describes a detailed protocol for the preparation
of a neuronal cell culture in which giant calyx-type synaptic terminals are formed.
This chapter also presents detailed protocols for utilizing the main technical
advantages provided by such a preparation, namely, labeling and imaging of synaptic
organelles and electrophysiological recordings directly from presynaptic terminals.
alternative_title:
- Methods in Molecular Biology
article_processing_charge: No
author:
- first_name: Dimitar
full_name: Dimitrov, Dimitar
last_name: Dimitrov
- first_name: Laurent
full_name: Guillaud, Laurent
last_name: Guillaud
- first_name: Kohgaku
full_name: Eguchi, Kohgaku
id: 2B7846DC-F248-11E8-B48F-1D18A9856A87
last_name: Eguchi
orcid: 0000-0002-6170-2546
- first_name: Tomoyuki
full_name: Takahashi, Tomoyuki
last_name: Takahashi
citation:
ama: 'Dimitrov D, Guillaud L, Eguchi K, Takahashi T. Culture of mouse giant central
nervous system synapses and application for imaging and electrophysiological analyses.
In: Skaper SD, ed. Neurotrophic Factors. Vol 1727. Springer; 2018:201-215.
doi:10.1007/978-1-4939-7571-6_15'
apa: Dimitrov, D., Guillaud, L., Eguchi, K., & Takahashi, T. (2018). Culture
of mouse giant central nervous system synapses and application for imaging and
electrophysiological analyses. In S. D. Skaper (Ed.), Neurotrophic Factors
(Vol. 1727, pp. 201–215). Springer. https://doi.org/10.1007/978-1-4939-7571-6_15
chicago: Dimitrov, Dimitar, Laurent Guillaud, Kohgaku Eguchi, and Tomoyuki Takahashi.
“Culture of Mouse Giant Central Nervous System Synapses and Application for Imaging
and Electrophysiological Analyses.” In Neurotrophic Factors, edited by
Stephen D. Skaper, 1727:201–15. Springer, 2018. https://doi.org/10.1007/978-1-4939-7571-6_15.
ieee: D. Dimitrov, L. Guillaud, K. Eguchi, and T. Takahashi, “Culture of mouse giant
central nervous system synapses and application for imaging and electrophysiological
analyses,” in Neurotrophic Factors, vol. 1727, S. D. Skaper, Ed. Springer,
2018, pp. 201–215.
ista: 'Dimitrov D, Guillaud L, Eguchi K, Takahashi T. 2018.Culture of mouse giant
central nervous system synapses and application for imaging and electrophysiological
analyses. In: Neurotrophic Factors. Methods in Molecular Biology, vol. 1727, 201–215.'
mla: Dimitrov, Dimitar, et al. “Culture of Mouse Giant Central Nervous System Synapses
and Application for Imaging and Electrophysiological Analyses.” Neurotrophic
Factors, edited by Stephen D. Skaper, vol. 1727, Springer, 2018, pp. 201–15,
doi:10.1007/978-1-4939-7571-6_15.
short: D. Dimitrov, L. Guillaud, K. Eguchi, T. Takahashi, in:, S.D. Skaper (Ed.),
Neurotrophic Factors, Springer, 2018, pp. 201–215.
date_created: 2018-12-11T11:47:11Z
date_published: 2018-01-01T00:00:00Z
date_updated: 2021-01-12T08:03:05Z
day: '01'
ddc:
- '570'
department:
- _id: RySh
doi: 10.1007/978-1-4939-7571-6_15
editor:
- first_name: Stephen D.
full_name: Skaper, Stephen D.
last_name: Skaper
external_id:
pmid:
- '29222783'
file:
- access_level: open_access
checksum: 8aa174ca65a56fbb19e9f88cff3ac3fd
content_type: application/pdf
creator: dernst
date_created: 2019-11-19T07:47:43Z
date_updated: 2020-07-14T12:47:09Z
file_id: '7046'
file_name: 2018_NeurotrophicFactors_Dimitrov.pdf
file_size: 787407
relation: main_file
file_date_updated: 2020-07-14T12:47:09Z
has_accepted_license: '1'
intvolume: ' 1727'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Submitted Version
page: 201 - 215
pmid: 1
publication: Neurotrophic Factors
publication_status: published
publisher: Springer
publist_id: '7252'
quality_controlled: '1'
scopus_import: 1
status: public
title: Culture of mouse giant central nervous system synapses and application for
imaging and electrophysiological analyses
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1727
year: '2018'
...
---
_id: '59'
abstract:
- lang: eng
text: Graph-based games are an important tool in computer science. They have applications
in synthesis, verification, refinement, and far beyond. We review graphbased games
with objectives on infinite plays. We give definitions and algorithms to solve
the games and to give a winning strategy. The objectives we consider are mostly
Boolean, but we also look at quantitative graph-based games and their objectives.
Synthesis aims to turn temporal logic specifications into correct reactive systems.
We explain the reduction of synthesis to graph-based games (or equivalently tree
automata) using synthesis of LTL specifications as an example. We treat the classical
approach that uses determinization of parity automata and more modern approaches.
author:
- first_name: Roderick
full_name: Bloem, Roderick
last_name: Bloem
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Barbara
full_name: Jobstmann, Barbara
last_name: Jobstmann
citation:
ama: 'Bloem R, Chatterjee K, Jobstmann B. Graph games and reactive synthesis. In:
Henzinger TA, Clarke EM, Veith H, Bloem R, eds. Handbook of Model Checking.
1st ed. Springer; 2018:921-962. doi:10.1007/978-3-319-10575-8_27'
apa: Bloem, R., Chatterjee, K., & Jobstmann, B. (2018). Graph games and reactive
synthesis. In T. A. Henzinger, E. M. Clarke, H. Veith, & R. Bloem (Eds.),
Handbook of Model Checking (1st ed., pp. 921–962). Springer. https://doi.org/10.1007/978-3-319-10575-8_27
chicago: Bloem, Roderick, Krishnendu Chatterjee, and Barbara Jobstmann. “Graph Games
and Reactive Synthesis.” In Handbook of Model Checking, edited by Thomas
A Henzinger, Edmund M. Clarke, Helmut Veith, and Roderick Bloem, 1st ed., 921–62.
Springer, 2018. https://doi.org/10.1007/978-3-319-10575-8_27.
ieee: R. Bloem, K. Chatterjee, and B. Jobstmann, “Graph games and reactive synthesis,”
in Handbook of Model Checking, 1st ed., T. A. Henzinger, E. M. Clarke,
H. Veith, and R. Bloem, Eds. Springer, 2018, pp. 921–962.
ista: 'Bloem R, Chatterjee K, Jobstmann B. 2018.Graph games and reactive synthesis.
In: Handbook of Model Checking. , 921–962.'
mla: Bloem, Roderick, et al. “Graph Games and Reactive Synthesis.” Handbook of
Model Checking, edited by Thomas A Henzinger et al., 1st ed., Springer, 2018,
pp. 921–62, doi:10.1007/978-3-319-10575-8_27.
short: R. Bloem, K. Chatterjee, B. Jobstmann, in:, T.A. Henzinger, E.M. Clarke,
H. Veith, R. Bloem (Eds.), Handbook of Model Checking, 1st ed., Springer, 2018,
pp. 921–962.
date_created: 2018-12-11T11:44:24Z
date_published: 2018-05-19T00:00:00Z
date_updated: 2021-01-12T08:05:10Z
day: '19'
department:
- _id: KrCh
doi: 10.1007/978-3-319-10575-8_27
edition: '1'
editor:
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Edmund M.
full_name: Clarke, Edmund M.
last_name: Clarke
- first_name: Helmut
full_name: Veith, Helmut
last_name: Veith
- first_name: Roderick
full_name: Bloem, Roderick
last_name: Bloem
language:
- iso: eng
month: '05'
oa_version: None
page: 921 - 962
publication: Handbook of Model Checking
publication_identifier:
isbn:
- 978-3-319-10574-1
publication_status: published
publisher: Springer
publist_id: '7995'
quality_controlled: '1'
scopus_import: 1
status: public
title: Graph games and reactive synthesis
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '60'
abstract:
- lang: eng
text: Model checking is a computer-assisted method for the analysis of dynamical
systems that can be modeled by state-transition systems. Drawing from research
traditions in mathematical logic, programming languages, hardware design, and
theoretical computer science, model checking is now widely used for the verification
of hardware and software in industry. This chapter is an introduction and short
survey of model checking. The chapter aims to motivate and link the individual
chapters of the handbook, and to provide context for readers who are not familiar
with model checking.
author:
- first_name: Edmund
full_name: Clarke, Edmund
last_name: Clarke
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Helmut
full_name: Veith, Helmut
last_name: Veith
citation:
ama: 'Clarke E, Henzinger TA, Veith H. Introduction to model checking. In: Henzinger
TA, ed. Handbook of Model Checking. Handbook of Model Checking. Springer;
2018:1-26. doi:10.1007/978-3-319-10575-8_1'
apa: Clarke, E., Henzinger, T. A., & Veith, H. (2018). Introduction to model
checking. In T. A. Henzinger (Ed.), Handbook of Model Checking (pp. 1–26).
Springer. https://doi.org/10.1007/978-3-319-10575-8_1
chicago: Clarke, Edmund, Thomas A Henzinger, and Helmut Veith. “Introduction to
Model Checking.” In Handbook of Model Checking, edited by Thomas A Henzinger,
1–26. Handbook of Model Checking. Springer, 2018. https://doi.org/10.1007/978-3-319-10575-8_1.
ieee: E. Clarke, T. A. Henzinger, and H. Veith, “Introduction to model checking,”
in Handbook of Model Checking, T. A. Henzinger, Ed. Springer, 2018, pp.
1–26.
ista: 'Clarke E, Henzinger TA, Veith H. 2018.Introduction to model checking. In:
Handbook of Model Checking. , 1–26.'
mla: Clarke, Edmund, et al. “Introduction to Model Checking.” Handbook of Model
Checking, edited by Thomas A Henzinger, Springer, 2018, pp. 1–26, doi:10.1007/978-3-319-10575-8_1.
short: E. Clarke, T.A. Henzinger, H. Veith, in:, T.A. Henzinger (Ed.), Handbook
of Model Checking, Springer, 2018, pp. 1–26.
date_created: 2018-12-11T11:44:25Z
date_published: 2018-05-19T00:00:00Z
date_updated: 2021-01-12T08:05:35Z
day: '19'
department:
- _id: ToHe
doi: 10.1007/978-3-319-10575-8_1
editor:
- first_name: Thomas A
full_name: Henzinger, Thomas A
last_name: Henzinger
language:
- iso: eng
month: '05'
oa_version: None
page: 1 - 26
publication: Handbook of Model Checking
publication_status: published
publisher: Springer
publist_id: '7994'
quality_controlled: '1'
scopus_import: 1
series_title: Handbook of Model Checking
status: public
title: Introduction to model checking
type: book_chapter
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '61'
abstract:
- lang: eng
text: 'We prove that there is no strongly regular graph (SRG) with parameters (460;
153; 32; 60). The proof is based on a recent lower bound on the number of 4-cliques
in a SRG and some applications of Euclidean representation of SRGs. '
article_processing_charge: No
author:
- first_name: Andriy
full_name: Bondarenko, Andriy
last_name: Bondarenko
- first_name: Anton
full_name: Mellit, Anton
id: 388D3134-F248-11E8-B48F-1D18A9856A87
last_name: Mellit
- first_name: Andriy
full_name: Prymak, Andriy
last_name: Prymak
- first_name: Danylo
full_name: Radchenko, Danylo
last_name: Radchenko
- first_name: Maryna
full_name: Viazovska, Maryna
last_name: Viazovska
citation:
ama: 'Bondarenko A, Mellit A, Prymak A, Radchenko D, Viazovska M. There is no strongly
regular graph with parameters (460; 153; 32; 60). In: Contemporary Computational
Mathematics. Springer; 2018:131-134. doi:10.1007/978-3-319-72456-0_7'
apa: Bondarenko, A., Mellit, A., Prymak, A., Radchenko, D., & Viazovska, M.
(2018). There is no strongly regular graph with parameters (460; 153; 32; 60).
In Contemporary Computational Mathematics (pp. 131–134). Springer. https://doi.org/10.1007/978-3-319-72456-0_7
chicago: Bondarenko, Andriy, Anton Mellit, Andriy Prymak, Danylo Radchenko, and
Maryna Viazovska. “There Is No Strongly Regular Graph with Parameters (460; 153;
32; 60).” In Contemporary Computational Mathematics, 131–34. Springer,
2018. https://doi.org/10.1007/978-3-319-72456-0_7.
ieee: A. Bondarenko, A. Mellit, A. Prymak, D. Radchenko, and M. Viazovska, “There
is no strongly regular graph with parameters (460; 153; 32; 60),” in Contemporary
Computational Mathematics, Springer, 2018, pp. 131–134.
ista: 'Bondarenko A, Mellit A, Prymak A, Radchenko D, Viazovska M. 2018.There is
no strongly regular graph with parameters (460; 153; 32; 60). In: Contemporary
Computational Mathematics. , 131–134.'
mla: Bondarenko, Andriy, et al. “There Is No Strongly Regular Graph with Parameters
(460; 153; 32; 60).” Contemporary Computational Mathematics, Springer,
2018, pp. 131–34, doi:10.1007/978-3-319-72456-0_7.
short: A. Bondarenko, A. Mellit, A. Prymak, D. Radchenko, M. Viazovska, in:, Contemporary
Computational Mathematics, Springer, 2018, pp. 131–134.
date_created: 2018-12-11T11:44:25Z
date_published: 2018-05-23T00:00:00Z
date_updated: 2021-01-12T08:06:06Z
day: '23'
department:
- _id: TaHa
doi: 10.1007/978-3-319-72456-0_7
extern: '1'
external_id:
arxiv:
- '1509.06286'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1509.06286
month: '05'
oa: 1
oa_version: Preprint
page: 131 - 134
publication: Contemporary Computational Mathematics
publication_status: published
publisher: Springer
publist_id: '7993'
quality_controlled: '1'
status: public
title: There is no strongly regular graph with parameters (460; 153; 32; 60)
type: book_chapter
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '6354'
abstract:
- lang: eng
text: Blood platelets are critical for hemostasis and thrombosis, but also play
diverse roles during immune responses. We have recently reported that platelets
migrate at sites of infection in vitro and in vivo. Importantly, platelets use
their ability to migrate to collect and bundle fibrin (ogen)-bound bacteria accomplishing
efficient intravascular bacterial trapping. Here, we describe a method that allows
analyzing platelet migration in vitro, focusing on their ability to collect bacteria
and trap bacteria under flow.
acknowledgement: ' FöFoLe project 947 (F.G.), the Friedrich-Baur-Stiftung project
41/16 (F.G.)'
article_number: e3018
author:
- first_name: Shuxia
full_name: Fan, Shuxia
last_name: Fan
- first_name: Michael
full_name: Lorenz, Michael
last_name: Lorenz
- first_name: Steffen
full_name: Massberg, Steffen
last_name: Massberg
- first_name: Florian R
full_name: Gärtner, Florian R
id: 397A88EE-F248-11E8-B48F-1D18A9856A87
last_name: Gärtner
orcid: 0000-0001-6120-3723
citation:
ama: Fan S, Lorenz M, Massberg S, Gärtner FR. Platelet migration and bacterial trapping
assay under flow. Bio-Protocol. 2018;8(18). doi:10.21769/bioprotoc.3018
apa: Fan, S., Lorenz, M., Massberg, S., & Gärtner, F. R. (2018). Platelet migration
and bacterial trapping assay under flow. Bio-Protocol. Bio-Protocol. https://doi.org/10.21769/bioprotoc.3018
chicago: Fan, Shuxia, Michael Lorenz, Steffen Massberg, and Florian R Gärtner. “Platelet
Migration and Bacterial Trapping Assay under Flow.” Bio-Protocol. Bio-Protocol,
2018. https://doi.org/10.21769/bioprotoc.3018.
ieee: S. Fan, M. Lorenz, S. Massberg, and F. R. Gärtner, “Platelet migration and
bacterial trapping assay under flow,” Bio-Protocol, vol. 8, no. 18. Bio-Protocol,
2018.
ista: Fan S, Lorenz M, Massberg S, Gärtner FR. 2018. Platelet migration and bacterial
trapping assay under flow. Bio-Protocol. 8(18), e3018.
mla: Fan, Shuxia, et al. “Platelet Migration and Bacterial Trapping Assay under
Flow.” Bio-Protocol, vol. 8, no. 18, e3018, Bio-Protocol, 2018, doi:10.21769/bioprotoc.3018.
short: S. Fan, M. Lorenz, S. Massberg, F.R. Gärtner, Bio-Protocol 8 (2018).
date_created: 2019-04-29T09:40:33Z
date_published: 2018-09-20T00:00:00Z
date_updated: 2021-01-12T08:07:12Z
day: '20'
ddc:
- '570'
department:
- _id: MiSi
doi: 10.21769/bioprotoc.3018
ec_funded: 1
file:
- access_level: open_access
checksum: d4588377e789da7f360b553ae02c5119
content_type: application/pdf
creator: dernst
date_created: 2019-04-30T08:04:33Z
date_updated: 2020-07-14T12:47:28Z
file_id: '6360'
file_name: 2018_BioProtocol_Fan.pdf
file_size: 2928337
relation: main_file
file_date_updated: 2020-07-14T12:47:28Z
has_accepted_license: '1'
intvolume: ' 8'
issue: '18'
keyword:
- Platelets
- Cell migration
- Bacteria
- Shear flow
- Fibrinogen
- E. coli
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 260AA4E2-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '747687'
name: Mechanical Adaptation of Lamellipodial Actin Networks in Migrating Cells
publication: Bio-Protocol
publication_identifier:
issn:
- 2331-8325
publication_status: published
publisher: Bio-Protocol
quality_controlled: '1'
status: public
title: Platelet migration and bacterial trapping assay under flow
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2018'
...